Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1866.3 946 100.0
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1538.9 965 81.8
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1451.0 975 77.5
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1291.9 950 70.8
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1286.2 995 67.8
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1278.5 935 70.4
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1278.5 1015 66.2
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1274.6 1018 65.4
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1270.4 1016 65.6
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1263.4 971 67.5
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1262.7 991 66.5
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1261.1 1013 65.6
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1260.7 1008 66.0
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1259.2 972 67.6
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1257.3 992 66.3
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1257.3 998 65.4
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1255.4 1007 65.2
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1254.2 1005 65.6
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1252.7 1029 63.9
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1251.9 998 65.1
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1251.1 1006 64.3
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1251.1 1009 65.1
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1248.8 982 66.0
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1248.0 1013 65.0
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1247.3 1021 64.3
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1246.5 995 64.7
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1245.0 1015 64.5
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1244.6 1013 64.2
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1244.6 1008 65.1
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1244.6 1005 65.1
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1243.8 1016 63.7
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1243.0 1013 64.3
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1242.6 903 71.3
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1241.9 1013 64.2
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1241.9 1011 63.7
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1238.4 1011 63.8
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1238.0 988 65.8
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1237.2 989 64.4
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1235.7 1003 64.9
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1233.8 1012 64.0
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1231.5 1019 63.1
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1227.6 1041 62.1
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1227.6 1005 64.0
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1226.5 1004 63.4
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1224.2 1052 61.5
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1224.2 1041 61.9
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1224.2 1060 60.7
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1223.8 1011 63.8
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1223.4 945 66.7
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1221.1 1002 63.7
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1219.1 1034 62.4
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1219.1 1002 63.1
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1218.0 1007 63.9
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1214.9 1039 62.2
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1214.5 1002 63.1
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1214.1 1008 63.4
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1213.0 1019 63.0
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1213.0 1002 63.4
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1211.4 999 63.0
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1210.7 1012 63.0
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1208.4 1004 62.8
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1205.7 1029 61.5
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1204.1 978 64.6
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1204.1 1036 61.3
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1202.2 1002 63.1
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1200.3 998 62.8
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1199.9 1013 62.2
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1199.5 997 62.7
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1199.5 1001 63.1
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1199.5 987 63.8
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1197.6 1003 62.2
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1196.0 997 62.3
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1196.0 997 62.3
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1195.3 999 62.0
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1194.9 997 62.2
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1194.1 997 62.1
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1191.8 1006 61.6
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1189.9 1014 61.7
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1186.8 990 64.2
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1183.7 967 64.4
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1182.5 1078 58.9
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1182.2 1014 61.3
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1181.4 1012 61.8
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1177.2 968 64.2
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1170.6 1015 60.8
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1164.8 966 62.9
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1162.5 932 66.6
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1146.0 944 64.3
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1142.1 1013 59.4
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1139.0 1019 59.2
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1133.6 975 61.2
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1132.5 975 61.8
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1127.5 1012 58.7
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1127.1 976 61.1
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1125.5 978 60.5
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1123.2 1014 59.0
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1119.4 1010 58.5
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1114.8 1104 55.4
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1103.2 987 60.6
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1103.2 1008 57.5
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1099.0 1020 57.5
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1098.6 1023 57.9
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1097.0 976 58.3
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 1.3e-311 1072.8 1009 57.0
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 5.8e-311 1070.8 1044 55.4
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 1.7e-307 1059.3 1038 55.7
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 1.2e-305 1053.1 1009 55.3
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 5.8e-303 1044.3 1143 51.0
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 2.2e-302 1042.3 905 62.3
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 3.9e-299 1031.6 1176 49.7
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 1.5e-298 1029.6 1004 55.7
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 5.6e-298 1027.7 1042 54.1
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 1.1e-296 1023.5 1010 55.1
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.4e-296 1023.1 914 59.5
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 1.2e-295 1020.0 864 62.8
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 3.1e-288 995.3 921 57.7
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 2.0e-287 992.6 883 61.4
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 6.4e-286 987.6 1025 53.5
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 2.5e-269 932.6 887 57.6
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 3.1e-264 915.6 857 57.6
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.1e-250 870.5 867 55.1
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 5.7e-250 868.2 814 59.1
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 2.0e-234 816.6 1038 45.9
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 5.7e-234 815.1 949 48.3
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.3e-233 813.9 1030 45.9
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.7e-222 776.9 774 55.0
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.4e-211 740.7 988 44.9
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 5.8e-210 735.3 987 43.5
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.5e-205 719.9 789 47.1
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 2.1e-199 700.3 631 61.0
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 3.5e-191 672.9 626 58.6
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 7.6e-186 655.2 647 55.0
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 7.6e-186 655.2 614 57.8
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 3.2e-184 649.8 1214 36.7
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 5.3e-163 579.3 380 75.5
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 5.5e-160 569.3 353 78.5
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 2.2e-145 520.8 390 69.5
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 9.7e-133 478.8 396 65.2
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-130 471.9 369 68.3
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.0e-121 442.2 558 46.6
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 1.7e-113 414.8 533 45.2
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.7e-92 345.1 287 63.8
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 1.9e-91 341.7 195 79.0
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 1.9e-88 331.6 747 33.9
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 5.6e-88 330.1 238 72.7
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 8.9e-86 322.8 253 68.4
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 7.8e-82 309.7 239 66.9
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 4.4e-69 267.3 146 84.2
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 7.6e-69 266.5 215 67.9
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.2e-66 259.2 150 80.0
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 3.1e-54 218.0 852 26.8
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 7.4e-48 196.8 181 51.9
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.3e-47 196.1 223 54.3
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 2.1e-42 178.7 114 67.5
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.1e-38 166.4 147 67.3
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 5.3e-38 164.1 230 47.8
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 8.5e-36 156.8 150 54.0
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 5.5e-35 154.1 90 75.6
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 1.8e-30 139.0 213 43.2
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.1e-27 129.8 79 72.2
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 3.2e-27 128.3 117 61.5
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 7.9e-26 123.6 77 70.1
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 6.7e-25 120.6 125 53.6
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 3.8e-20 104.8 104 55.8
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 5.0e-20 104.4 96 55.2
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 5.5e-19 100.9 81 61.7
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.4e-14 85.5 57 77.2
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 4.1e-14 84.7 95 47.4
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 4.1e-14 84.7 95 47.4
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 7.0e-14 84.0 77 54.5
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.2e-13 83.2 82 46.3
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.5e-11 76.3 74 56.8
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 2.5e-11 75.5 48 72.9
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 2.3e-09 68.9 65 50.8


User provided reference genes

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