Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 1.2e-291 1005.7 516 100.0
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 5.3e-226 787.7 545 76.1
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 3.6e-214 748.4 536 73.9
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 7.3e-183 644.4 535 62.8
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 1.7e-179 633.3 557 59.2
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 1.0e-176 624.0 557 59.8
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 6.6e-176 621.3 502 62.2
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 2.6e-172 609.4 538 58.4
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 2.9e-171 605.9 546 58.4
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 1.4e-170 603.6 546 58.2
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 1.4e-170 603.6 538 58.9
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 2.4e-170 602.8 512 63.9
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 9.2e-170 600.9 563 58.1
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 1.3e-168 597.0 521 60.5
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 3.9e-168 595.5 533 58.9
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 1.5e-167 593.6 562 56.9
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 7.3e-167 591.3 542 58.1
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 9.6e-167 590.9 531 57.4
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 1.6e-166 590.1 536 58.4
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 1.6e-166 590.1 514 60.3
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 2.8e-166 589.3 508 60.4
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 8.1e-166 587.8 542 57.7
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 1.8e-165 586.6 514 60.5
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 6.9e-165 584.7 556 55.8
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 7.6e-164 581.3 517 58.6
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 9.9e-164 580.9 511 59.9
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 1.7e-163 580.1 533 58.2
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 2.9e-163 579.3 546 55.7
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 2.9e-163 579.3 525 57.0
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 8.4e-163 577.8 541 57.3
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 5.4e-162 575.1 559 55.8
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 9.3e-162 574.3 540 58.0
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 4.6e-161 572.0 544 55.0
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 4.6e-161 572.0 530 56.8
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 4.6e-161 572.0 544 57.5
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 2.3e-160 569.7 562 55.7
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 3.9e-160 568.9 525 56.2
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 1.1e-159 567.4 532 56.6
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 1.9e-159 566.6 523 56.0
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 4.3e-159 565.5 525 55.6
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 4.3e-159 565.5 525 55.6
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 4.3e-159 565.5 536 56.5
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 5.6e-159 565.1 539 55.7
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 5.6e-159 565.1 551 55.9
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 9.6e-159 564.3 525 55.6
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 1.3e-158 563.9 544 58.8
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 2.1e-158 563.1 535 56.3
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 3.6e-158 562.4 562 53.9
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 3.6e-158 562.4 525 55.4
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.8e-157 560.1 525 55.6
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.8e-157 560.1 560 53.9
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 5.8e-156 555.1 558 55.6
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 9.9e-156 554.3 530 55.3
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 1.3e-155 553.9 536 55.8
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 1.3e-155 553.9 507 56.2
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 2.2e-155 553.1 571 51.1
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 3.8e-155 552.4 548 54.0
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 3.8e-155 552.4 544 53.9
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 3.2e-154 549.3 526 54.0
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 5.4e-154 548.5 543 54.3
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 2.1e-153 546.6 541 54.2
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 3.5e-153 545.8 558 54.7
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 7.9e-153 544.7 511 56.2
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 1.0e-152 544.3 528 54.2
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 3.0e-152 542.7 700 46.6
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 1.1e-151 540.8 512 55.7
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 3.3e-151 539.3 508 54.3
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 3.3e-151 539.3 459 60.6
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 1.6e-150 537.0 492 57.1
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 1.6e-150 537.0 515 53.2
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 3.7e-150 535.8 515 55.1
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 3.7e-150 535.8 540 53.9
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 8.1e-150 534.6 541 52.7
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 1.1e-149 534.3 530 52.3
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 1.8e-149 533.5 515 54.8
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 3.8e-147 525.8 533 52.7
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 1.9e-146 523.5 536 52.4
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 4.2e-146 522.3 510 54.5
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 7.1e-146 521.5 538 52.0
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 7.9e-145 518.1 539 51.9
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 1.0e-144 517.7 440 59.8
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 3.9e-144 515.8 540 52.2
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 3.9e-144 515.8 540 52.4
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 5.1e-144 515.4 532 52.4
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 2.8e-142 509.6 518 52.9
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 8.2e-142 508.1 411 62.8
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 3.1e-141 506.1 542 50.7
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 2.6e-140 503.1 542 50.4
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 4.5e-140 502.3 562 50.9
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 6.5e-139 498.4 542 50.0
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 1.4e-138 497.3 541 51.4
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 1.4e-138 497.3 542 50.0
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 3.5e-137 492.7 541 50.8
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 1.3e-136 490.7 537 50.7
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 6.7e-136 488.4 540 48.5
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 1.9e-135 486.9 537 51.2
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 1.9e-135 486.9 551 49.0
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 9.7e-135 484.6 540 50.2
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 1.7e-131 473.8 587 47.0
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.9e-131 473.0 703 43.5
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 6.1e-129 465.3 486 51.2
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 7.9e-129 464.9 514 47.9
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 5.1e-128 462.2 527 50.9
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 2.6e-124 449.9 560 48.4
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 8.5e-115 418.3 436 52.8
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 7.2e-114 415.2 349 60.5
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 2.3e-112 410.2 370 60.5
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 1.6e-108 397.5 311 65.6
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 2.0e-103 380.6 313 63.3
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 4.5e-100 369.4 339 59.0
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 1.1e-93 348.2 309 58.6
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 2.3e-91 340.5 356 52.5
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 2.3e-88 330.5 542 35.2
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 1.1e-85 321.6 331 52.9
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 2.0e-84 317.4 514 37.5
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 2.3e-83 313.9 527 35.9
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 1.1e-82 311.6 530 36.8
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.1e-82 311.6 516 36.6
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 1.0e-80 305.1 388 46.6
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 1.4e-80 304.7 327 50.5
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 1.0e-67 261.9 411 39.9
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 2.1e-65 254.2 340 45.9
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 6.6e-59 232.6 148 74.3
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 6.4e-54 216.1 151 70.2
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.9e-53 214.5 199 55.3
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 3.2e-53 213.8 168 63.7
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 5.4e-53 213.0 128 79.7
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 8.7e-51 205.7 130 76.2
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 2.5e-50 204.1 125 73.6
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 4.4e-47 193.4 177 53.1
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 5.6e-42 176.4 100 78.0
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 2.8e-41 174.1 590 25.6
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 1.4e-37 161.8 217 43.3
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.1e-32 145.6 83 81.9
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 1.7e-22 111.7 164 39.0
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.7e-20 104.4 99 50.5
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 6.7e-19 99.8 53 81.1
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 3.7e-17 94.0 121 45.5
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 3.7e-17 94.0 69 62.3
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 6.3e-17 93.2 124 45.2
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 7.7e-15 86.3 139 43.2
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 6.1e-12 76.6 93 47.3
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 3.9e-11 73.9 96 46.9
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 3.9e-11 73.9 89 47.2
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 1.1e-08 65.9 82 47.6
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 4.1e-08 63.9 89 37.1
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 7.7e-07 59.7 56 46.4
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.9e-06 57.8 93 33.3


User provided reference genes

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