Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 2.7e-74 283.1 331 100.0
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 3.6e-66 256.1 331 94.9
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 2.2e-63 246.9 331 93.7
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 5.4e-62 242.3 331 92.7
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 3.5e-61 239.6 321 94.7
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 7.2e-59 231.9 325 93.2
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 9.5e-59 231.5 325 93.5
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.6e-58 230.7 329 92.4
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.1e-58 230.3 325 91.7
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 2.1e-58 230.3 321 93.1
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.1e-58 230.3 329 92.1
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 2.1e-58 230.3 322 93.8
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 2.1e-58 230.3 322 93.8
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 3.6e-58 229.6 325 91.1
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.7e-58 229.2 322 92.9
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.0e-57 228.0 320 93.4
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 1.0e-57 228.0 318 94.3
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 1.4e-57 227.6 318 93.7
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 2.3e-57 226.9 331 91.8
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 2.3e-57 226.9 330 92.1
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 2.3e-57 226.9 331 90.9
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 3.0e-57 226.5 321 93.1
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 3.0e-57 226.5 331 92.1
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 4.0e-57 226.1 321 93.5
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 4.0e-57 226.1 319 93.1
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 6.8e-57 225.3 318 91.5
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 6.8e-57 225.3 335 81.5
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.0e-56 223.8 321 92.5
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 2.6e-56 223.4 330 90.9
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.4e-56 223.0 324 89.5
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 3.4e-56 223.0 323 88.9
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.4e-56 222.6 319 93.1
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 5.7e-56 222.2 329 91.2
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 5.7e-56 222.2 324 91.0
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 5.7e-56 222.2 323 92.0
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 7.5e-56 221.9 322 91.6
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 9.8e-56 221.5 324 88.0
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 1.3e-55 221.1 323 91.3
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 1.7e-55 220.7 323 91.6
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 1.7e-55 220.7 323 91.6
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.7e-55 220.7 323 91.6
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.2e-55 220.3 320 91.6
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.8e-55 219.9 326 90.8
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 2.8e-55 219.9 323 91.6
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 3.7e-55 219.5 318 92.5
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 3.7e-55 219.5 318 92.5
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.7e-55 219.5 319 92.2
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 8.3e-55 218.4 323 91.0
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 8.3e-55 218.4 330 91.2
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 8.3e-55 218.4 325 88.6
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 8.3e-55 218.4 320 92.8
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 1.4e-54 217.6 323 90.7
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 1.8e-54 217.2 325 88.0
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.8e-54 217.2 303 95.7
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.4e-54 216.9 340 80.6
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 2.4e-54 216.9 320 90.6
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 2.4e-54 216.9 321 89.4
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 2.4e-54 216.9 303 95.4
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 3.1e-54 216.5 320 89.7
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 3.1e-54 216.5 323 91.0
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 3.1e-54 216.5 323 90.4
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 3.1e-54 216.5 321 91.6
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.1e-54 216.5 324 91.0
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 4.1e-54 216.1 323 90.7
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.1e-54 216.1 318 89.9
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 5.4e-54 215.7 323 91.6
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 7.0e-54 215.3 321 89.4
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.2e-53 214.5 318 88.4
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 2.7e-53 213.4 327 89.9
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 2.7e-53 213.4 323 87.6
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 2.7e-53 213.4 331 89.7
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 3.5e-53 213.0 299 95.3
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 5.9e-53 212.2 326 90.2
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.3e-52 211.1 323 90.1
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.3e-52 211.1 318 91.8
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.7e-52 210.7 322 89.1
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 2.9e-52 209.9 339 62.5
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.8e-52 209.5 322 76.7
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 3.8e-52 209.5 366 68.0
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.8e-52 209.5 322 88.8
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 5.0e-52 209.1 320 88.1
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 6.6e-52 208.8 351 66.7
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 8.6e-52 208.4 322 89.1
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.5e-51 206.8 311 92.0
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.5e-51 206.8 318 90.9
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 5.6e-51 205.7 304 92.1
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 7.3e-51 205.3 318 90.6
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 7.3e-51 205.3 318 90.6
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 9.5e-51 204.9 318 90.3
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 9.5e-51 204.9 318 90.3
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 1.2e-50 204.5 319 90.0
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 2.1e-50 203.8 318 90.6
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 2.1e-50 203.8 318 90.6
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.1e-50 203.8 318 90.3
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 3.6e-50 203.0 321 89.7
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 3.6e-50 203.0 318 90.6
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 4.7e-50 202.6 320 88.8
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 8.0e-50 201.8 296 92.9
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 1.0e-49 201.4 318 90.3
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.4e-49 201.1 246 89.0
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.8e-49 200.7 320 87.8
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 4.0e-49 199.5 325 88.9
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 5.2e-49 199.1 325 88.9
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 8.9e-49 198.4 245 87.8
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.5e-48 197.6 319 89.7
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.4e-48 196.4 338 86.4
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 7.5e-48 195.3 322 87.9
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 7.5e-48 195.3 327 77.1
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 9.8e-48 194.9 331 86.1
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 9.8e-48 194.9 244 88.5
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 9.8e-48 194.9 321 86.6
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 2.9e-47 193.4 334 73.7
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 3.7e-47 193.0 305 91.8
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 6.4e-47 192.2 322 87.9
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 6.4e-47 192.2 338 78.1
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.8e-46 190.7 324 80.9
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.8e-46 190.7 324 80.9
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 3.2e-46 189.9 332 87.3
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 4.1e-46 189.5 322 87.9
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 1.2e-45 188.0 322 86.3
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.7e-45 186.8 332 70.2
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 3.5e-45 186.4 344 71.2
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.7e-44 184.1 342 82.2
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 1.7e-44 184.1 244 70.1
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.9e-44 183.0 347 74.6
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 8.6e-44 181.8 317 84.2
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.1e-43 181.4 318 85.2
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.1e-43 181.4 318 85.2
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 4.3e-43 179.5 319 85.3
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.1e-42 177.2 323 86.4
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.6e-42 176.4 105 82.9
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 6.2e-42 175.6 323 86.1
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 1.8e-41 174.1 323 85.8
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 3.1e-41 173.3 327 71.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 4.0e-41 172.9 248 85.1
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 5.2e-41 172.6 222 93.2
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 5.2e-41 172.6 313 87.5
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 1.2e-40 171.4 99 83.8
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.9e-39 166.8 94 83.0
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.9e-39 166.8 94 83.0
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 6.4e-39 165.6 324 81.5
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 8.3e-39 165.2 324 81.8
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.4e-38 164.5 104 78.8
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 1.4e-38 164.5 97 82.5
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 1.4e-38 164.5 97 82.5
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.4e-38 164.5 324 84.0
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.9e-38 164.1 326 81.6
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 2.4e-38 163.7 79 96.2
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 5.4e-38 162.5 319 52.0
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 9.2e-38 161.8 93 83.9
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 1.0e-36 158.3 94 83.0
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 6.6e-36 155.6 105 73.3
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 4.3e-35 152.9 105 73.3
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 6.2e-34 149.1 247 80.2
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 2.3e-33 147.1 247 78.9
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.7e-29 133.7 73 83.6
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 3.5e-29 133.3 306 79.4
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.5e-27 127.9 278 81.3
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.5e-27 127.1 99 63.6
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 5.6e-27 125.9 325 75.7
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 7.3e-27 125.6 73 84.9
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.9e-19 100.9 120 92.5
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.6e-19 99.4 65 73.8
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 7.3e-19 99.0 73 68.5
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.1e-17 95.1 64 65.6
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.8e-17 94.4 252 70.6
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 2.4e-17 94.0 120 55.8
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 5.2e-17 92.8 50 82.0
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.0e-16 90.9 64 64.1
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.7e-15 87.8 256 86.3
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 4.6e-13 79.7 77 54.5
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 2.3e-12 77.4 48 79.2
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 5.1e-12 76.3 43 81.4
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 8.7e-12 75.5 41 85.4
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 2.5e-11 73.9 41 87.8
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 2.1e-10 70.9 41 85.4
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 5.3e-09 66.2 34 91.2
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 4.5e-08 63.2 34 85.3
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 5.8e-08 62.8 40 72.5
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 2.9e-07 60.5 51 58.8


User provided reference genes

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