Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 2.4e-68 262.3 160 100.0
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 3.5e-27 125.6 98 92.9
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 3.0e-18 95.9 55 74.5
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 3.9e-18 95.5 55 76.4
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 6.7e-18 94.7 55 74.5
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 1.5e-17 93.6 52 76.9
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 1.9e-17 93.2 52 76.9
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.9e-17 93.2 95 80.0
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.5e-17 92.8 51 78.4
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.5e-17 92.8 55 72.7
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 4.3e-17 92.0 52 75.0
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 4.3e-17 92.0 55 70.9
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 4.3e-17 92.0 55 69.1
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 5.6e-17 91.7 90 81.1
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 5.6e-17 91.7 52 75.0
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 5.6e-17 91.7 55 70.9
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 5.6e-17 91.7 55 70.9
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 5.6e-17 91.7 55 70.9
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 5.6e-17 91.7 52 75.0
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 7.4e-17 91.3 51 78.4
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 7.4e-17 91.3 52 73.1
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 7.4e-17 91.3 131 63.4
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 7.4e-17 91.3 52 75.0
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 9.6e-17 90.9 54 72.2
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.3e-16 90.5 51 74.5
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.3e-16 90.5 55 69.1
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.6e-16 90.1 52 73.1
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.1e-16 89.7 55 69.1
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 2.1e-16 89.7 51 74.5
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 2.8e-16 89.4 50 76.0
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.8e-16 89.4 55 69.1
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 2.8e-16 89.4 53 71.7
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.8e-16 89.4 54 72.2
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 2.8e-16 89.4 52 75.0
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 3.7e-16 89.0 55 69.1
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.7e-16 89.0 53 71.7
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 3.7e-16 89.0 50 72.0
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 3.7e-16 89.0 53 71.7
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 3.7e-16 89.0 50 76.0
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 4.8e-16 88.6 116 64.7
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.8e-16 88.6 56 67.9
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.8e-16 88.6 56 67.9
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 4.8e-16 88.6 56 67.9
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 4.8e-16 88.6 104 71.2
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 6.2e-16 88.2 149 58.4
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 6.2e-16 88.2 54 70.4
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 6.2e-16 88.2 53 71.7
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 6.2e-16 88.2 50 76.0
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 6.2e-16 88.2 54 68.5
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 8.2e-16 87.8 52 73.1
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 8.2e-16 87.8 50 74.0
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 8.2e-16 87.8 54 68.5
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.1e-15 87.4 55 67.3
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 1.4e-15 87.0 55 69.1
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.4e-15 87.0 50 76.0
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 1.4e-15 87.0 53 75.5
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 1.8e-15 86.7 53 69.8
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 1.8e-15 86.7 53 69.8
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.8e-15 86.7 53 69.8
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 3.1e-15 85.9 54 68.5
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 3.1e-15 85.9 54 68.5
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 3.1e-15 85.9 49 75.5
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 3.1e-15 85.9 101 72.3
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 3.1e-15 85.9 54 66.7
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 4.0e-15 85.5 50 74.0
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 4.0e-15 85.5 49 73.5
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 4.0e-15 85.5 55 69.1
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 4.0e-15 85.5 55 65.5
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 4.0e-15 85.5 54 66.7
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 4.0e-15 85.5 54 66.7
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 4.0e-15 85.5 52 71.2
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 4.0e-15 85.5 52 71.2
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 4.0e-15 85.5 48 72.9
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 4.0e-15 85.5 48 72.9
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 4.0e-15 85.5 48 72.9
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 4.0e-15 85.5 52 69.2
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 6.9e-15 84.7 49 73.5
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 6.9e-15 84.7 49 73.5
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 6.9e-15 84.7 54 68.5
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 6.9e-15 84.7 50 72.0
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 9.0e-15 84.3 51 74.5
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 9.0e-15 84.3 51 66.7
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 9.0e-15 84.3 101 68.3
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.2e-14 84.0 96 70.8
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 1.2e-14 84.0 49 69.4
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 1.2e-14 84.0 57 66.7
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 1.2e-14 84.0 49 67.3
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.5e-14 83.6 53 69.8
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 2.0e-14 83.2 49 71.4
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.0e-14 83.2 52 71.2
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 2.0e-14 83.2 46 76.1
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.4e-14 82.4 46 73.9
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 3.4e-14 82.4 54 64.8
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 3.4e-14 82.4 48 68.8
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 7.6e-14 81.3 52 65.4
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 7.6e-14 81.3 43 76.7
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 1.0e-13 80.9 54 66.7
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 1.3e-13 80.5 43 76.7
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 1.7e-13 80.1 53 66.0
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.9e-13 79.3 51 64.7
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 4.9e-13 78.6 100 62.0
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 6.5e-13 78.2 51 64.7
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 6.5e-13 78.2 50 70.0
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 6.5e-13 78.2 49 65.3
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 8.4e-13 77.8 53 64.2
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 8.4e-13 77.8 128 60.2
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.9e-12 76.6 46 69.6
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 2.5e-12 76.3 53 62.3
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 2.5e-12 76.3 54 63.0
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 2.5e-12 76.3 37 81.1
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 2.5e-12 76.3 53 64.2
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 2.5e-12 76.3 57 61.4
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 2.5e-12 76.3 51 62.7
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 2.5e-12 76.3 51 62.7
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 3.2e-12 75.9 53 62.3
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 3.2e-12 75.9 47 66.0
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 4.2e-12 75.5 97 67.0
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 5.5e-12 75.1 51 66.7
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 7.1e-12 74.7 47 66.0
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 7.1e-12 74.7 47 66.0
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 9.3e-12 74.3 46 63.0
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 1.2e-11 73.9 106 67.0
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 1.2e-11 73.9 49 63.3
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 2.1e-11 73.2 107 65.4
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 2.1e-11 73.2 107 65.4
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.5e-11 72.4 40 72.5
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 3.5e-11 72.4 46 65.2
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 4.6e-11 72.0 46 65.2
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 6.1e-11 71.6 35 77.1
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 7.9e-11 71.2 51 58.8
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 1.8e-10 70.1 40 67.5
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 1.1e-09 67.4 50 56.0
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 3.3e-09 65.9 35 74.3
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 4.3e-09 65.5 30 83.3
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 5.7e-09 65.1 39 64.1
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 7.4e-09 64.7 55 52.7
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.3e-08 63.9 34 70.6
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.3e-08 63.9 41 58.5
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.6e-08 63.5 40 62.5
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.6e-08 63.5 30 83.3
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.6e-08 63.5 30 83.3
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.2e-08 63.2 53 54.7
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 6.3e-08 61.6 44 61.4
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 1.4e-07 60.5 45 55.6
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 1.8e-07 60.1 47 55.3
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 1.8e-07 60.1 35 62.9
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 1.8e-07 60.1 35 60.0
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 2.4e-07 59.7 35 62.9
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 2.4e-07 59.7 37 62.2
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.4e-07 59.7 44 59.1
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.4e-07 59.7 35 65.7
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 2.4e-07 59.7 51 51.0
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 4.1e-07 58.9 35 62.9
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 5.3e-07 58.5 31 67.7
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 5.3e-07 58.5 46 50.0
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 5.3e-07 58.5 39 59.0
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 6.9e-07 58.2 34 64.7
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 6.9e-07 58.2 34 64.7
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 6.9e-07 58.2 30 73.3
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 6.9e-07 58.2 35 62.9
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 1.5e-06 57.0 39 51.3
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 2.0e-06 56.6 34 61.8
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 2.0e-06 56.6 40 55.0
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.6e-06 56.2 31 64.5
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 2.6e-06 56.2 30 66.7
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 3.4e-06 55.8 33 66.7
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 4.5e-06 55.5 38 50.0
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 4.5e-06 55.5 31 58.1
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 7.7e-06 54.7 30 66.7


User provided reference genes

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