Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 8.7e-90 333.6 163 100.0
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 3.4e-86 321.6 163 96.9
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 3.7e-32 142.1 139 51.1
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.1e-31 140.6 142 52.8
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 1.2e-30 137.1 140 49.3
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 4.5e-30 135.2 140 48.6
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 6.6e-29 131.3 138 49.3
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.5e-28 130.2 138 50.7
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 3.3e-28 129.0 146 48.6
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 5.5e-28 128.3 147 44.2
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 1.2e-27 127.1 147 44.2
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 4.7e-27 125.2 136 45.6
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 8.0e-27 124.4 147 43.5
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.4e-26 123.6 134 42.5
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.0e-26 122.5 138 48.6
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 5.2e-26 121.7 134 47.8
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 8.9e-26 120.9 138 47.8
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.2e-25 120.6 137 44.5
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 4.4e-25 118.6 140 45.7
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 1.3e-24 117.1 137 42.3
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.3e-24 117.1 140 45.0
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 1.3e-24 117.1 137 39.4
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.7e-24 116.7 144 43.1
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 2.2e-24 116.3 139 43.9
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 3.7e-24 115.5 143 39.2
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 3.7e-24 115.5 143 37.8
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 6.3e-24 114.8 139 41.7
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 6.3e-24 114.8 139 40.3
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 8.3e-24 114.4 143 39.2
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 8.3e-24 114.4 150 38.7
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.1e-23 114.0 139 38.1
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 1.8e-23 113.2 149 38.3
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 2.4e-23 112.8 152 38.2
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 2.4e-23 112.8 154 36.4
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 3.2e-23 112.5 141 38.3
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 4.1e-23 112.1 143 39.2
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 4.1e-23 112.1 143 39.2
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 4.1e-23 112.1 137 40.9
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 4.1e-23 112.1 158 35.4
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 5.4e-23 111.7 139 40.3
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 5.4e-23 111.7 152 38.8
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 7.0e-23 111.3 146 39.7
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 7.0e-23 111.3 154 37.0
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 9.2e-23 110.9 143 38.5
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 9.2e-23 110.9 139 37.4
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 9.2e-23 110.9 136 41.9
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 9.2e-23 110.9 154 35.7
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 1.2e-22 110.5 152 38.8
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 1.6e-22 110.2 139 41.0
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 1.6e-22 110.2 133 39.1
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.6e-22 110.2 154 35.7
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.6e-22 110.2 160 36.2
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 2.0e-22 109.8 154 37.0
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 2.7e-22 109.4 139 39.6
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 3.5e-22 109.0 139 43.2
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 3.5e-22 109.0 152 41.4
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 4.5e-22 108.6 139 40.3
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 7.8e-22 107.8 139 39.6
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.7e-21 106.7 154 36.4
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 1.7e-21 106.7 144 37.5
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.7e-21 106.7 148 37.2
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 2.3e-21 106.3 139 39.6
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 2.3e-21 106.3 140 39.3
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 2.3e-21 106.3 139 38.1
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.9e-21 105.9 139 39.6
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.9e-21 105.9 144 36.8
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.9e-21 105.9 144 36.8
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 3.9e-21 105.5 154 35.7
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 3.9e-21 105.5 144 36.8
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 3.9e-21 105.5 139 42.4
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 5.0e-21 105.1 167 38.9
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 5.0e-21 105.1 139 41.7
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.0e-21 105.1 152 40.1
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 1.5e-20 103.6 139 38.1
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 1.9e-20 103.2 145 38.6
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.5e-20 102.8 155 35.5
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 7.3e-20 101.3 177 33.9
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 9.5e-20 100.9 141 41.1
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 9.5e-20 100.9 139 40.3
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 1.6e-19 100.1 139 39.6
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 2.1e-19 99.8 112 41.1
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.6e-19 99.0 112 48.2
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 3.6e-19 99.0 158 36.7
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 6.1e-19 98.2 152 36.8
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 1.0e-18 97.4 145 35.9
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 3.1e-18 95.9 99 43.4
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 5.2e-18 95.1 135 42.2
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 5.2e-18 95.1 134 42.5
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 2.6e-17 92.8 112 42.0
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 3.4e-17 92.4 111 43.2
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 3.4e-17 92.4 112 42.0
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 2.2e-16 89.7 76 51.3
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.9e-16 89.4 110 41.8
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 3.7e-16 89.0 141 35.5
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 6.4e-16 88.2 118 36.4
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.4e-15 87.0 119 40.3
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.4e-15 87.0 110 43.6
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.9e-15 86.7 146 37.7
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.3e-13 80.5 150 32.0
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 1.3e-13 80.5 78 46.2
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.7e-13 80.1 139 36.7
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 1.7e-13 80.1 142 33.1
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 1.9e-12 76.6 142 34.5
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 3.3e-12 75.9 79 46.8
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 4.3e-12 75.5 81 40.7
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 1.2e-11 73.9 141 36.2
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.1e-11 73.2 87 46.0
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 2.8e-11 72.8 80 38.8
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 4.7e-11 72.0 73 49.3
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 8.0e-11 71.2 81 38.3
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 1.1e-10 70.9 76 42.1
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 2.3e-10 69.7 88 37.5
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 3.1e-10 69.3 139 35.3
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 4.0e-10 68.9 98 36.7
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 4.0e-10 68.9 84 39.3
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 4.4e-09 65.5 81 39.5
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 1.7e-08 63.5 140 32.9
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 2.9e-08 62.8 78 39.7
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 3.7e-08 62.4 78 42.3
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 6.4e-08 61.6 75 38.7
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 6.4e-08 61.6 75 38.7
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.1e-07 60.8 81 34.6
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 4.1e-07 58.9 133 27.1
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 4.1e-07 58.9 76 35.5
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 4.1e-07 58.9 76 35.5
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 5.4e-07 58.5 78 35.9
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 9.2e-07 57.8 80 36.2
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 1.6e-06 57.0 68 39.7


User provided reference genes

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