Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 1.0e-180 636.7 348 100.0
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 1.3e-172 609.8 349 96.3
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 1.0e-79 301.2 351 44.2
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 6.2e-77 292.0 352 44.6
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 7.6e-75 285.0 366 48.9
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 5.4e-65 252.3 209 56.5
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 7.1e-65 251.9 221 55.2
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 2.3e-55 220.3 377 40.1
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 4.3e-54 216.1 375 36.3
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 8.1e-53 211.8 215 50.2
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 1.8e-52 210.7 371 36.1
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 2.4e-52 210.3 368 34.5
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 2.6e-51 206.8 366 35.8
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 7.6e-51 205.3 348 37.1
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 2.9e-50 203.4 362 36.2
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 3.8e-50 203.0 369 35.2
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 1.1e-49 201.4 357 34.5
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 1.6e-48 197.6 358 38.8
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 6.0e-48 195.7 373 36.2
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.8e-47 194.1 375 33.6
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 1.8e-47 194.1 362 32.3
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 3.0e-47 193.4 378 33.9
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 5.1e-47 192.6 371 35.0
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 8.7e-47 191.8 371 35.0
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 2.5e-46 190.3 368 34.8
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 4.3e-46 189.5 360 34.7
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 5.7e-46 189.1 371 34.5
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 1.3e-45 188.0 202 48.5
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 1.3e-45 188.0 357 33.1
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 1.6e-45 187.6 356 31.7
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.6e-45 187.6 197 48.7
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.1e-45 187.2 172 51.2
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 6.3e-45 185.7 341 34.9
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 8.2e-45 185.3 350 34.9
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.8e-44 184.1 376 33.2
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 3.1e-44 183.3 408 31.6
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 3.1e-44 183.3 365 33.2
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 4.1e-44 183.0 354 32.8
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.2e-43 181.4 355 33.0
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 2.0e-43 180.6 380 32.6
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 2.0e-43 180.6 354 36.2
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 2.0e-43 180.6 171 50.9
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 3.4e-43 179.9 357 31.4
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 4.5e-43 179.5 363 32.8
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 5.9e-43 179.1 363 33.6
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 7.6e-43 178.7 193 45.1
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 7.6e-43 178.7 354 35.6
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 1.3e-42 177.9 367 32.4
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.3e-42 177.9 369 32.8
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 1.7e-42 177.6 371 31.0
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 1.7e-42 177.6 366 33.1
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 2.2e-42 177.2 178 45.5
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 5.0e-42 176.0 383 32.9
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 5.0e-42 176.0 368 32.9
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 8.5e-42 175.3 392 30.9
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 1.4e-41 174.5 346 32.7
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 1.9e-41 174.1 378 31.7
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 1.9e-41 174.1 240 39.6
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 3.2e-41 173.3 366 31.4
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 3.2e-41 173.3 354 31.1
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 4.2e-41 172.9 347 33.7
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.2e-40 171.4 337 34.1
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 2.7e-40 170.2 215 42.8
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 4.6e-40 169.5 370 30.3
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 4.6e-40 169.5 362 31.8
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 4.6e-40 169.5 367 31.3
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.8e-39 167.5 359 32.0
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 1.8e-39 167.5 367 33.0
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 1.8e-39 167.5 385 30.9
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 3.0e-39 166.8 382 31.9
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 3.9e-39 166.4 379 32.5
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 6.7e-39 165.6 174 44.3
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 6.7e-39 165.6 338 33.4
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 1.1e-38 164.9 179 41.9
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 7.4e-38 162.2 201 42.8
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 9.7e-38 161.8 178 43.8
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 2.2e-37 160.6 433 30.3
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 2.8e-37 160.2 357 31.1
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 4.8e-37 159.5 123 56.9
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 4.8e-37 159.5 396 30.1
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 6.3e-37 159.1 369 30.6
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 6.3e-37 159.1 170 44.7
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 8.2e-37 158.7 369 29.5
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 1.1e-36 158.3 357 30.8
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 1.1e-36 158.3 211 38.9
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 1.4e-36 157.9 364 33.2
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.8e-36 157.5 186 42.5
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 5.3e-36 156.0 207 38.2
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 6.9e-36 155.6 186 43.5
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 2.6e-35 153.7 190 40.0
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 7.7e-35 152.1 220 40.0
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 1.7e-34 151.0 366 29.5
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 2.2e-34 150.6 190 39.5
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 5.0e-34 149.4 439 26.9
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.4e-33 147.9 350 35.1
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 5.5e-33 146.0 331 28.1
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.2e-32 144.8 172 43.0
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 2.7e-32 143.7 198 35.9
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 4.6e-32 142.9 179 43.6
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 4.6e-32 142.9 179 43.6
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 7.9e-32 142.1 193 36.3
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 2.3e-31 140.6 445 24.3
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 3.9e-31 139.8 341 28.7
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 5.1e-31 139.4 259 34.4
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 8.8e-31 138.7 152 43.4
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 2.6e-30 137.1 178 41.6
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 4.4e-30 136.3 172 44.2
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 5.7e-30 136.0 313 28.1
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 7.4e-30 135.6 179 42.5
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 1.7e-29 134.4 200 38.5
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 3.7e-29 133.3 117 53.0
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 6.3e-29 132.5 357 25.2
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 6.3e-29 132.5 314 30.3
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 6.3e-29 132.5 358 27.1
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 8.2e-29 132.1 143 46.2
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.8e-28 131.0 170 39.4
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 5.3e-28 129.4 172 40.1
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 1.2e-27 128.3 171 40.4
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 3.4e-27 126.7 346 27.7
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 5.0e-26 122.9 220 35.5
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 5.0e-26 122.9 188 39.4
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 6.5e-26 122.5 183 34.4
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 5.5e-25 119.4 349 28.9
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 7.2e-25 119.0 352 27.0
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 1.2e-24 118.2 171 40.4
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 1.2e-24 118.2 171 40.4
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 1.2e-24 118.2 171 39.2
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 4.7e-24 116.3 173 38.7
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 1.0e-23 115.2 178 37.6
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 1.0e-23 115.2 209 35.4
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 1.0e-23 115.2 125 42.4
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 1.8e-23 114.4 183 36.1
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.8e-23 114.4 142 38.7
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 2.3e-23 114.0 152 37.5
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 3.0e-23 113.6 173 37.6
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 3.9e-23 113.2 290 27.6
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 5.2e-23 112.8 152 36.8
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 5.2e-23 112.8 152 36.8
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 2.0e-22 110.9 140 41.4
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 2.0e-22 110.9 334 26.0
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 4.8e-21 106.3 130 39.2
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 2.4e-20 104.0 96 46.9
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 2.0e-19 100.9 367 28.6
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 7.7e-19 99.0 174 31.6
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.7e-18 97.8 173 30.6
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.7e-18 97.8 172 31.4
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 2.2e-18 97.4 287 27.9
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 3.8e-18 96.7 277 27.4
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 4.2e-17 93.2 111 42.3
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 6.1e-16 89.4 142 35.9
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 1.8e-15 87.8 117 35.9
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 4.0e-15 86.7 126 37.3
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 8.8e-15 85.5 133 33.8
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 2.6e-14 84.0 266 25.6
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 3.1e-12 77.0 314 30.6
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.0e-10 72.0 68 44.1
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 9.4e-09 65.5 48 54.2
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 9.4e-09 65.5 226 28.8
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.2e-08 65.1 106 34.9
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 2.1e-08 64.3 272 23.2
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 2.1e-08 64.3 272 23.2
Lsat_1_v5_gn_5_71261 Lactuca sativa HOM05D003860 ORTHO05D004218 4.4e-06 56.6 43 60.5


User provided reference genes

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