Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 5932.1 3010 100.0
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 4162.5 3067 71.1
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 4053.1 3065 69.4
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 2649.4 3283 47.2
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 2600.5 2970 50.5
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 2561.6 3160 46.1
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 2554.2 3221 47.1
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2546.2 3469 44.2
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 2543.8 3210 46.2
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 2493.4 3230 45.7
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 2485.7 3182 46.1
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 2483.0 3235 45.9
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 2481.4 3238 44.5
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 2478.0 3207 45.5
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 2440.6 3224 45.0
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 2412.5 3199 44.7
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 2411.7 3202 43.8
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 2410.6 3187 44.8
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2408.6 3269 44.6
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 2383.2 3198 44.4
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 2377.1 3169 44.6
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2367.8 3257 44.1
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 2367.0 3192 44.8
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2354.3 3264 43.9
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 2347.4 3180 44.1
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 2345.1 3226 44.2
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 2341.6 3256 43.7
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2333.1 3227 42.4
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 2329.3 3304 43.5
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 2326.6 3193 43.8
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 2279.6 3226 42.2
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 2256.9 3234 42.2
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2246.5 3217 42.8
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2242.6 3229 41.6
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2239.9 3169 43.1
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 2236.5 3184 42.4
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 2235.7 3203 42.5
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 2235.3 3206 42.2
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 2229.5 3202 42.4
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 2227.2 3856 37.8
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 2219.5 3200 41.8
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 2192.9 3182 41.2
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 2191.4 2821 45.5
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2184.1 2889 45.0
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2179.4 3308 41.5
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2164.4 3249 40.5
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 2157.1 3214 41.3
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 2145.5 3211 41.0
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 2144.0 3208 41.3
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2107.8 3208 40.8
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 2107.8 3208 40.8
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 2107.4 3196 41.0
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 2103.9 3193 40.3
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 2094.7 3189 40.5
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 2085.8 2157 53.5
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2081.2 3178 41.1
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 2078.1 2820 43.4
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 2072.7 3186 40.5
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2068.9 3181 40.5
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2055.8 3201 40.0
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 2054.3 3063 41.7
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 2015.0 3152 40.4
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 2009.6 3233 39.2
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 2008.0 3204 40.0
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1958.0 2874 41.9
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1941.0 3020 39.9
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1912.1 3288 38.1
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 1879.8 3224 38.1
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1872.4 2222 47.8
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 1852.4 3191 38.6
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 1851.6 2494 43.8
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1845.5 2317 46.1
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1838.9 1721 56.4
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1768.1 1778 53.3
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 1730.3 2885 38.9
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1704.1 3232 35.3
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1562.7 1440 55.9
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1562.0 1376 60.2
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1549.3 1665 50.7
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1538.9 1339 59.4
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1517.3 1589 52.8
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1499.2 1287 60.7
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 1489.9 3085 34.2
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1466.8 1331 57.3
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1370.1 1728 45.1
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1341.3 1212 58.9
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1298.9 1342 51.9
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1243.4 1207 54.3
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 0.0e+00 1211.1 2565 34.2
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 0.0e+00 1158.7 1913 38.0
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 0.0e+00 1083.6 1864 35.5
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 2.9e-308 1063.5 1781 37.5
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 1.1e-307 1061.6 1392 46.3
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.4e-289 1001.5 1097 49.9
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 3.2e-286 990.3 2468 30.9
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 1.0e-284 985.3 1321 43.0
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 1.1e-283 981.9 1861 34.8
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 1.6e-242 845.1 592 71.1
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 1.6e-237 828.6 1687 34.1
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 4.5e-208 730.7 1808 31.2
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 6.1e-205 720.3 1855 31.1
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 5.0e-199 700.7 677 55.7
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 2.6e-171 608.6 874 41.8
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 1.6e-149 536.2 1281 30.1
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.2e-147 530.0 1266 29.9
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.2e-147 530.0 1278 29.8
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 9.6e-142 510.4 471 56.3
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 4.9e-138 498.0 886 36.7
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.9e-137 496.1 2070 25.6
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 2.2e-130 472.6 1179 29.7
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 2.2e-130 472.6 895 37.5
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 7.9e-128 464.2 940 33.6
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 5.6e-126 458.0 1504 28.2
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 2.9e-122 445.7 912 34.5
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 2.5e-113 416.0 458 46.5
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 4.4e-102 378.6 328 62.8
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 4.4e-86 325.5 869 28.9
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 3.7e-85 322.4 870 29.7
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 7.0e-84 318.2 903 28.2
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 2.1e-80 306.6 216 69.4
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 5.7e-78 298.5 867 27.2
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 1.4e-68 267.3 225 60.4
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 4.7e-64 252.3 369 43.9
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 1.4e-60 240.7 1214 24.9
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 1.7e-58 233.8 435 36.6
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 1.6e-51 210.7 152 69.1
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 1.6e-51 210.7 152 69.1
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 1.6e-51 210.7 145 71.0
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 1.7e-50 207.2 210 51.9
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 2.5e-49 203.4 184 58.2
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 2.9e-45 189.9 657 25.3
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 3.9e-42 179.5 131 69.5
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-39 171.4 641 24.5
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 6.8e-39 168.7 1029 21.2
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.3e-37 164.5 102 79.4
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 7.3e-33 148.7 123 63.4
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 6.9e-31 142.1 153 47.1
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 4.6e-27 129.4 169 45.6
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 2.5e-25 123.6 340 29.1
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 5.6e-25 122.5 73 76.7
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 4.0e-23 116.3 117 49.6
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 7.6e-22 112.1 63 82.5
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 1.7e-21 110.9 173 38.7
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 2.2e-21 110.5 545 26.1
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 4.6e-19 102.8 205 29.8
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 3.0e-18 100.1 118 50.8
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 5.6e-17 95.9 238 29.4
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 1.8e-15 90.9 141 38.3
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 2.9e-13 83.6 208 26.4
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 4.2e-12 79.7 73 56.2
SEGI_30472 Sequoiadendron giganteum HOM05D004524 ORTHO05D037600 2.7e-11 77.0 174 28.2
SEGI_31558 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 3.5e-11 76.6 521 21.7
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 4.6e-11 76.3 93 39.8
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 1.0e-10 75.1 56 60.7
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 1.3e-10 74.7 97 41.2
Lsat_1_v5_gn_9_22560 Lactuca sativa HOM05D000737 ORTHO05D000581 6.7e-10 72.4 38 84.2
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 1.1e-09 71.6 253 28.1
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-09 71.2 392 23.5
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 3.3e-09 70.1 42 78.6
MBI12_g09298_MAGBIO Magnolia biondii HOM05D002653 ORTHO05D002623 2.1e-08 67.4 383 22.5
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 1.1e-07 65.1 605 19.2
vmacro03486 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 1.2e-06 61.6 414 21.0
VMungo0720G0368 Vigna mungo HOM05D004524 ORTHO05D051592 1.5e-06 61.2 78 38.5


User provided reference genes

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