Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 0.0e+00 1206.0 589 100.0
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 9.3e-158 561.2 636 51.1
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 2.3e-148 530.0 610 50.5
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 2.6e-128 463.4 671 43.5
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 6.3e-122 442.2 695 39.9
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 1.5e-120 437.6 596 44.1
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 7.7e-120 435.3 698 38.5
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 3.8e-119 433.0 694 39.3
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 1.6e-117 427.6 659 40.8
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 6.1e-117 425.6 692 39.0
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 1.8e-116 424.1 685 40.1
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 2.3e-116 423.7 659 39.8
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.6e-115 420.2 669 39.0
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 4.8e-114 416.0 673 39.1
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 6.3e-114 415.6 669 39.2
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 1.1e-113 414.8 664 40.2
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 2.0e-112 410.6 668 38.5
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 3.8e-111 406.4 667 37.6
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 8.5e-111 405.2 676 38.6
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 5.5e-110 402.5 626 39.9
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 9.4e-110 401.7 673 39.7
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.2e-109 401.4 658 38.0
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 2.7e-109 400.2 679 38.0
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 3.6e-109 399.8 661 38.0
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 8.0e-109 398.7 698 36.7
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.4e-108 397.9 658 38.1
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 8.8e-108 395.2 668 38.8
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 7.4e-107 392.1 666 36.6
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 6.3e-106 389.0 678 38.9
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 1.4e-105 387.9 714 36.7
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 2.4e-105 387.1 603 39.5
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 9.1e-105 385.2 626 37.7
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 2.0e-104 384.0 656 38.6
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 2.0e-104 384.0 682 37.4
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 3.5e-104 383.3 659 39.3
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 4.5e-104 382.9 672 36.5
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 1.0e-103 381.7 618 39.3
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 2.2e-103 380.6 680 36.3
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 3.8e-103 379.8 675 36.9
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 5.0e-103 379.4 691 37.0
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 5.0e-103 379.4 663 39.4
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 1.5e-102 377.9 667 35.2
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 2.5e-102 377.1 662 39.1
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 5.5e-102 375.9 672 36.2
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 7.2e-102 375.6 640 37.3
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 3.3e-99 366.7 623 38.2
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 5.7e-99 365.9 675 36.4
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 1.7e-98 364.4 671 36.5
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 6.3e-98 362.5 690 36.5
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 3.1e-97 360.1 648 36.6
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 1.2e-96 358.2 669 36.2
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 2.7e-96 357.1 651 37.6
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 1.0e-95 355.1 668 35.3
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 6.5e-95 352.4 603 37.3
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 4.2e-94 349.7 555 41.1
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 5.5e-94 349.4 675 35.9
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 9.4e-94 348.6 675 36.1
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 2.1e-93 347.4 667 37.0
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 2.7e-93 347.1 669 35.4
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 1.8e-92 344.4 600 36.8
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 1.2e-91 341.7 668 34.4
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 1.5e-91 341.3 608 36.0
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 3.4e-91 340.1 676 34.2
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 9.8e-91 338.6 670 36.1
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 8.3e-90 335.5 586 36.5
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 1.1e-89 335.1 711 33.9
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 2.4e-89 334.0 585 37.4
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 5.4e-89 332.8 666 36.0
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 2.7e-88 330.5 597 35.3
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 8.6e-87 325.5 656 35.7
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 4.2e-86 323.2 688 34.3
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 5.5e-86 322.8 575 36.9
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 8.0e-85 318.9 565 37.3
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 2.0e-83 314.3 575 37.4
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 4.4e-83 313.2 467 39.8
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 1.7e-82 311.2 718 32.9
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 2.2e-82 310.8 590 34.2
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 2.4e-81 307.4 550 37.3
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 7.0e-81 305.8 524 37.4
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 9.2e-81 305.4 625 36.6
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 1.7e-79 301.2 648 32.4
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 1.1e-78 298.5 670 32.2
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 3.4e-75 287.0 640 31.7
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 1.4e-68 265.0 337 44.2
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 2.3e-68 264.2 404 40.3
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.2e-67 261.9 698 30.7
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 1.5e-67 261.5 667 31.0
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 2.0e-67 261.2 643 31.1
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 5.8e-67 259.6 519 33.1
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 7.5e-67 259.2 651 31.3
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 9.2e-65 252.3 559 32.0
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 1.3e-63 248.4 424 37.3
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 7.3e-62 242.7 652 30.7
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 2.1e-61 241.1 675 29.0
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 8.1e-53 212.6 654 29.8
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 3.8e-50 203.8 374 35.8
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 4.2e-49 200.3 322 38.5
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 1.2e-48 198.7 409 32.8
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 6.0e-48 196.4 393 33.3
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.6e-35 154.5 191 46.1
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 4.3e-30 137.1 257 33.5
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 5.6e-30 136.7 357 29.7
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 2.1e-29 134.8 114 59.6
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 2.2e-18 98.2 466 24.7
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.1e-17 95.9 138 39.9
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 6.1e-16 90.1 86 58.1
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.8e-15 88.6 136 39.0
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 3.0e-15 87.8 246 30.5
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.2e-13 81.6 83 51.8
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.2e-13 81.6 83 51.8
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 6.3e-13 80.1 183 30.1
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.4e-09 68.9 219 28.3
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 1.9e-09 68.6 65 56.9
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 1.8e-07 62.0 165 30.9
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 1.1e-06 59.3 363 20.9
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 4.3e-06 57.4 133 31.6


User provided reference genes

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