Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 1.2e-124 449.9 234 100.0
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 6.0e-68 261.5 209 67.9
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 4.3e-58 228.8 190 67.4
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 2.1e-57 226.5 190 63.2
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 6.3e-57 224.9 189 65.6
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 1.1e-56 224.2 189 64.6
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 1.4e-56 223.8 237 57.0
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 1.8e-56 223.4 230 57.4
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 1.8e-56 223.4 222 57.2
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 1.8e-56 223.4 192 62.0
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 9.0e-56 221.1 184 64.7
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 1.2e-55 220.7 225 56.9
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 1.5e-55 220.3 208 58.2
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 2.0e-55 219.9 192 63.0
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 2.0e-55 219.9 172 66.3
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.4e-55 219.2 235 56.2
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 4.5e-55 218.8 188 62.2
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 5.9e-55 218.4 192 59.9
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 7.6e-55 218.0 241 52.7
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 7.6e-55 218.0 219 56.2
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 1.3e-54 217.2 168 67.3
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 1.7e-54 216.9 210 59.0
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 1.7e-54 216.9 229 55.0
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 1.7e-54 216.9 215 58.1
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 1.7e-54 216.9 244 56.6
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 2.2e-54 216.5 208 56.7
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 2.2e-54 216.5 214 56.1
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 2.9e-54 216.1 159 70.4
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 3.8e-54 215.7 186 61.3
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 5.0e-54 215.3 199 58.8
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 5.0e-54 215.3 212 55.7
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 5.0e-54 215.3 203 58.6
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 6.5e-54 214.9 214 58.4
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 8.5e-54 214.5 216 58.3
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 8.5e-54 214.5 200 60.5
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 8.5e-54 214.5 266 49.6
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 8.5e-54 214.5 212 54.2
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 1.1e-53 214.2 191 60.2
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 1.1e-53 214.2 193 63.2
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 1.9e-53 213.4 232 54.7
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 1.9e-53 213.4 208 54.8
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 3.2e-53 212.6 180 63.3
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 4.2e-53 212.2 228 56.6
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 4.2e-53 212.2 191 61.3
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 5.5e-53 211.8 191 59.7
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 5.5e-53 211.8 226 54.9
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 7.2e-53 211.5 194 61.9
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 7.2e-53 211.5 192 61.5
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 9.3e-53 211.1 191 60.2
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 9.3e-53 211.1 220 56.8
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 1.2e-52 210.7 186 60.8
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 1.2e-52 210.7 162 64.2
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.2e-52 210.7 227 55.1
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 1.6e-52 210.3 196 58.7
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 1.6e-52 210.3 195 57.9
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 1.6e-52 210.3 160 65.6
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 3.6e-52 209.1 158 65.2
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 3.6e-52 209.1 164 66.5
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 3.6e-52 209.1 226 54.9
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 4.6e-52 208.8 161 66.5
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 7.9e-52 208.0 162 63.6
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 1.3e-51 207.2 188 58.5
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 1.3e-51 207.2 225 52.4
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 1.8e-51 206.8 192 60.9
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 3.0e-51 206.1 204 56.4
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 3.0e-51 206.1 237 52.7
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 5.1e-51 205.3 162 63.0
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.1e-51 205.3 212 56.1
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 6.7e-51 204.9 221 52.0
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.1e-50 204.1 225 54.2
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 1.1e-50 204.1 225 54.2
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.1e-50 204.1 225 54.2
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 1.5e-50 203.8 180 59.4
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 1.9e-50 203.4 227 52.0
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 1.9e-50 203.4 225 54.7
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 2.5e-50 203.0 225 53.8
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 2.5e-50 203.0 197 55.3
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 3.3e-50 202.6 225 52.4
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 3.3e-50 202.6 181 60.8
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 3.3e-50 202.6 203 58.1
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.7e-50 201.8 231 54.1
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 7.4e-50 201.4 195 56.4
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 7.4e-50 201.4 205 55.1
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 1.6e-49 200.3 231 52.4
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 1.6e-49 200.3 215 54.9
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 2.8e-49 199.5 234 49.1
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 2.8e-49 199.5 181 59.1
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 1.8e-48 196.8 194 57.2
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 5.3e-48 195.3 215 53.5
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.3e-48 195.3 229 52.0
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 5.3e-48 195.3 154 66.2
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 7.7e-47 191.4 210 52.9
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 1.3e-46 190.7 233 49.4
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 2.9e-46 189.5 200 52.0
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 6.5e-46 188.3 155 65.2
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.4e-45 187.2 151 67.5
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 7.2e-45 184.9 210 51.9
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 5.1e-43 178.7 191 55.0
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 5.7e-42 175.3 156 63.5
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 8.2e-41 171.4 158 57.0
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.1e-40 171.0 156 56.4
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 5.3e-40 168.7 155 58.1
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 1.5e-39 167.2 175 54.3
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 1.1e-37 161.0 203 47.3
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 1.1e-34 151.0 183 47.5
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 1.7e-33 147.1 205 46.8
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 7.7e-31 138.3 233 42.9
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 1.0e-27 127.9 168 43.5
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 2.3e-27 126.7 130 50.0
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 3.0e-27 126.3 93 66.7
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 9.1e-24 114.8 175 40.0
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 9.1e-24 114.8 96 61.5
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 9.1e-24 114.8 108 56.5
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 1.2e-23 114.4 155 41.9
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 2.0e-23 113.6 110 56.4
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 5.9e-23 112.1 191 40.3
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 2.2e-22 110.2 110 54.5
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 1.9e-21 107.1 145 48.3
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 5.5e-21 105.5 110 53.6
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 5.5e-21 105.5 69 72.5
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 5.5e-21 105.5 81 66.7
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 7.2e-21 105.1 191 38.2
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 2.7e-20 103.2 110 54.5
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.0e-18 97.1 81 61.7
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 2.4e-16 90.1 90 52.2
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 9.5e-13 78.2 205 30.7
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 4.7e-12 75.9 87 54.0
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 3.0e-11 73.2 112 37.5
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 6.8e-11 72.0 90 47.8
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 2.2e-09 67.0 93 46.2
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 6.3e-09 65.5 88 45.5
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 4.1e-08 62.8 116 32.8
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 4.1e-08 62.8 102 35.3
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 5.9e-07 58.9 103 34.0
THA.LOC104824268 Tarenaya hassleriana HOM05D002933 ORTHO05D007742 1.0e-06 58.2 185 27.0
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 1.0e-06 58.2 186 25.3


User provided reference genes

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