Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 1.3e-155 553.1 296 100.0
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 5.6e-111 404.8 297 76.4
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 8.1e-86 321.2 233 77.3
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 3.9e-64 249.2 297 52.2
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 8.2e-62 241.5 236 61.0
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 5.9e-60 235.3 295 52.2
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 5.9e-60 235.3 227 60.4
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 5.9e-60 235.3 297 50.5
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 7.6e-60 235.0 223 61.9
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 1.0e-59 234.6 230 61.7
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.9e-59 233.0 223 61.4
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.8e-59 232.6 293 51.2
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 3.8e-59 232.6 227 60.4
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 5.0e-59 232.3 227 63.0
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 6.5e-59 231.9 293 53.9
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 8.5e-59 231.5 217 61.3
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.1e-58 231.1 223 61.0
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 1.9e-58 230.3 215 62.8
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.9e-58 230.3 319 50.2
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 7.2e-58 228.4 309 51.1
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 7.2e-58 228.4 238 58.0
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 9.3e-58 228.0 293 49.8
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 9.3e-58 228.0 293 49.8
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 9.3e-58 228.0 233 58.8
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.2e-57 227.6 226 59.3
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.6e-57 227.3 212 63.7
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 2.7e-57 226.5 221 62.0
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 6.1e-57 225.3 295 47.8
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 7.9e-57 224.9 220 62.7
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 7.9e-57 224.9 228 58.8
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 1.0e-56 224.6 297 51.9
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 1.0e-56 224.6 233 57.9
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.0e-56 224.6 233 57.9
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.3e-56 224.2 301 49.5
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 1.8e-56 223.8 230 57.8
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 1.8e-56 223.8 284 52.1
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.9e-56 222.6 296 48.3
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 5.1e-56 222.2 292 51.7
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 5.1e-56 222.2 312 45.5
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 6.7e-56 221.9 223 60.1
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.1e-55 221.1 290 49.7
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 1.5e-55 220.7 296 50.3
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 1.5e-55 220.7 308 45.1
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.9e-55 220.3 292 52.7
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 2.5e-55 219.9 280 52.9
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 3.3e-55 219.5 298 51.3
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 3.3e-55 219.5 298 51.0
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 4.3e-55 219.2 293 50.5
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 4.3e-55 219.2 301 48.5
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 5.7e-55 218.8 297 51.9
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 1.3e-54 217.6 282 51.1
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 1.3e-54 217.6 295 50.5
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 2.2e-54 216.9 223 57.8
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.2e-54 216.9 294 50.0
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 3.7e-54 216.1 307 45.6
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 4.8e-54 215.7 243 56.0
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 4.8e-54 215.7 229 58.1
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 4.8e-54 215.7 298 50.0
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 6.3e-54 215.3 308 49.4
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 8.2e-54 214.9 292 49.7
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 1.8e-53 213.8 290 49.0
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 2.4e-53 213.4 240 56.2
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 3.1e-53 213.0 304 48.0
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 5.3e-53 212.2 219 57.5
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 5.3e-53 212.2 294 50.3
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 5.3e-53 212.2 298 54.0
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 5.3e-53 212.2 311 47.6
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 2.0e-52 210.3 230 57.0
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 2.0e-52 210.3 292 49.0
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 4.5e-52 209.1 219 58.4
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 4.5e-52 209.1 292 48.6
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 5.9e-52 208.8 324 45.7
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 5.9e-52 208.8 327 42.2
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.3e-51 207.6 226 57.1
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 1.7e-51 207.2 296 49.7
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 1.7e-51 207.2 282 48.2
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 2.9e-51 206.5 219 57.5
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.9e-51 206.5 320 46.6
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 5.0e-51 205.7 302 48.0
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 6.5e-51 205.3 301 47.8
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 8.5e-51 204.9 305 46.9
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 8.5e-51 204.9 307 47.2
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 1.1e-50 204.5 270 50.0
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.9e-50 203.8 297 46.5
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 1.9e-50 203.8 243 53.5
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.5e-50 203.4 238 54.2
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 4.2e-50 202.6 297 46.5
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 4.2e-50 202.6 232 55.2
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 5.5e-50 202.2 305 46.9
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 7.2e-50 201.8 233 54.5
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 9.4e-50 201.4 297 46.1
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 9.4e-50 201.4 296 48.0
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 4.6e-49 199.1 292 45.5
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 5.1e-48 195.7 242 52.9
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 6.7e-48 195.3 303 46.2
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 3.3e-47 193.0 253 50.2
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 5.7e-47 192.2 273 48.4
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 5.7e-47 192.2 273 48.0
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 5.7e-47 192.2 313 41.9
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 7.4e-47 191.8 240 52.1
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 9.7e-47 191.4 231 51.5
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 9.7e-47 191.4 289 47.1
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 1.3e-46 191.0 269 46.8
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.3e-46 191.0 239 50.6
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 1.3e-46 191.0 269 46.8
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 1.3e-46 191.0 222 54.5
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 1.7e-46 190.7 239 50.6
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 1.7e-46 190.7 265 47.2
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.2e-46 190.3 255 46.7
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 2.2e-46 190.3 313 41.5
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 2.8e-46 189.9 265 47.2
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 3.7e-46 189.5 266 47.7
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 3.7e-46 189.5 166 63.9
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 4.8e-46 189.1 238 52.9
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 6.3e-46 188.7 217 56.2
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.1e-45 188.0 280 46.8
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 1.4e-45 187.6 250 49.6
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 1.4e-45 187.6 294 44.9
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 1.8e-45 187.2 272 48.5
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.8e-45 187.2 303 44.9
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 4.1e-45 186.0 257 50.6
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 6.9e-45 185.3 279 44.4
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 3.4e-44 183.0 324 47.2
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 7.7e-44 181.8 238 50.4
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.7e-43 180.6 340 42.1
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 2.2e-43 180.3 291 44.0
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 5.0e-43 179.1 228 53.1
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 5.0e-43 179.1 238 52.1
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 8.5e-43 178.3 233 50.2
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.1e-42 177.9 284 45.8
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.1e-42 177.9 284 45.8
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 1.2e-41 174.5 312 40.1
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 2.1e-41 173.7 234 50.0
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.4e-40 171.0 229 50.2
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 3.9e-40 169.5 282 46.1
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 5.2e-40 169.1 220 52.3
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 3.3e-39 166.4 287 45.3
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 3.3e-39 166.4 290 44.5
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.3e-38 164.5 220 48.2
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 6.3e-38 162.2 324 41.7
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 2.0e-36 157.1 217 47.9
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 3.8e-35 152.9 237 46.4
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 5.0e-35 152.5 286 40.6
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 5.2e-32 142.5 243 42.4
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 6.7e-32 142.1 265 40.0
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 1.2e-31 141.4 210 48.1
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.2e-31 141.4 265 40.0
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 7.5e-31 138.7 216 43.5
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 7.5e-31 138.7 216 43.5
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 4.1e-29 132.9 216 42.1
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 7.0e-29 132.1 146 53.4
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 2.7e-28 130.2 225 43.1
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 5.9e-28 129.0 262 37.4
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 1.1e-26 124.8 104 65.4
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 1.5e-26 124.4 279 39.1
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 2.5e-26 123.6 111 62.2
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 4.4e-23 112.8 222 36.5
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 2.2e-22 110.5 171 42.7
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 5.9e-20 102.4 182 43.4
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 7.7e-20 102.1 157 44.6
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 4.9e-14 82.8 76 59.2
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 6.3e-14 82.4 66 74.2


User provided reference genes

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