Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 2.2e-134 482.3 238 100.0
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 4.2e-109 398.3 238 80.7
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 1.5e-103 379.8 238 78.2
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 5.5e-85 318.2 242 66.1
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.5e-82 310.1 246 63.0
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 4.4e-82 308.5 224 68.3
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 6.3e-81 304.7 243 65.0
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 3.5e-79 298.9 234 65.0
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.0e-78 297.4 244 62.3
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 6.5e-78 294.7 239 62.8
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 1.5e-77 293.5 236 63.1
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 2.5e-77 292.7 198 72.2
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 9.4e-77 290.8 242 61.2
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.1e-76 289.7 211 67.3
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 6.8e-75 284.6 226 61.5
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.2e-74 283.9 239 62.3
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.0e-74 283.1 213 65.3
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 5.7e-74 281.6 233 61.4
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 9.8e-74 280.8 237 58.2
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 9.8e-74 280.8 203 66.5
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 9.8e-74 280.8 247 57.9
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.7e-73 280.0 238 59.7
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 6.3e-73 278.1 238 59.7
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 8.3e-73 277.7 243 57.6
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.8e-72 276.6 251 57.4
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.8e-72 276.6 243 58.4
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 2.4e-72 276.2 251 59.4
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 3.1e-72 275.8 239 60.7
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 4.1e-72 275.4 242 59.5
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 5.4e-72 275.0 188 71.8
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.6e-71 273.5 236 58.5
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.6e-71 273.5 243 58.8
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 2.0e-71 273.1 250 56.8
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 7.7e-71 271.2 198 64.6
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 1.0e-70 270.8 242 57.4
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.7e-70 270.0 237 57.0
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.7e-70 270.0 220 61.8
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.3e-70 269.6 247 55.5
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.3e-70 269.6 247 55.5
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 2.3e-70 269.6 236 61.0
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.9e-70 269.2 247 55.5
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.8e-70 268.9 232 60.8
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 6.6e-70 268.1 238 58.0
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 8.6e-70 267.7 233 57.1
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 8.6e-70 267.7 192 69.8
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 8.6e-70 267.7 240 57.9
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 1.9e-69 266.5 244 57.4
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.9e-69 266.5 245 56.7
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.9e-69 266.5 220 61.8
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 2.5e-69 266.2 234 56.8
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 2.5e-69 266.2 234 56.8
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 3.3e-69 265.8 234 58.5
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 3.3e-69 265.8 173 73.4
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 5.5e-69 265.0 206 65.0
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 7.2e-69 264.6 220 61.8
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.6e-68 263.5 206 62.6
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 1.6e-68 263.5 227 58.6
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 1.6e-68 263.5 192 65.6
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 2.1e-68 263.1 174 70.7
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.1e-68 263.1 236 58.9
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 2.8e-68 262.7 186 66.7
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 2.8e-68 262.7 186 66.7
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 2.8e-68 262.7 237 58.6
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 3.6e-68 262.3 186 66.7
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 4.7e-68 261.9 236 58.1
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 6.1e-68 261.5 228 59.2
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 8.0e-68 261.2 181 68.0
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 1.0e-67 260.8 237 56.5
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.0e-67 260.8 241 56.8
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.0e-67 260.8 191 64.4
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.4e-67 260.4 266 52.6
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.8e-67 260.0 238 55.9
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.8e-67 260.0 238 55.9
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 2.3e-67 259.6 237 56.1
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 3.0e-67 259.2 235 58.3
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 3.0e-67 259.2 250 54.4
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 4.0e-67 258.8 241 56.4
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.2e-66 257.3 237 56.1
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-66 257.3 226 59.3
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.5e-66 256.9 236 58.5
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 4.4e-66 255.4 237 54.4
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 5.7e-66 255.0 229 59.0
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 9.8e-66 254.2 179 68.7
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 9.8e-66 254.2 186 65.6
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 1.7e-65 253.4 172 68.6
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.7e-65 253.4 240 57.1
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.7e-65 253.4 237 58.2
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.7e-65 253.4 234 56.0
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 1.7e-65 253.4 243 53.9
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 2.8e-65 252.7 230 60.0
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 2.8e-65 252.7 176 68.8
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 4.9e-65 251.9 214 58.4
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 4.9e-65 251.9 176 66.5
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 8.3e-65 251.1 280 50.4
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 1.4e-64 250.4 184 64.7
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 2.4e-64 249.6 235 55.3
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 4.1e-64 248.8 235 59.1
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 1.2e-63 247.3 227 57.7
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 5.9e-63 245.0 154 76.0
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 7.8e-63 244.6 185 62.7
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-62 243.8 152 77.0
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.7e-62 243.4 154 76.0
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 1.1e-61 240.7 241 53.9
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.9e-61 240.0 187 59.9
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.3e-61 238.8 145 76.6
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.2e-60 237.3 212 57.5
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.8e-60 236.1 158 73.4
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 6.1e-60 235.0 235 53.2
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 6.1e-60 235.0 170 68.2
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.4e-59 233.8 138 79.7
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.8e-59 233.4 191 61.8
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 5.2e-59 231.9 140 79.3
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 2.6e-58 229.6 140 76.4
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.2e-57 226.5 201 56.7
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 2.9e-57 226.1 151 69.5
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 2.9e-57 226.1 225 52.4
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.9e-57 226.1 225 52.4
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.1e-56 224.2 199 54.3
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.1e-56 224.2 157 67.5
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 2.4e-56 223.0 227 54.2
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 7.0e-56 221.5 227 52.0
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.1e-53 214.2 154 63.6
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 2.1e-52 209.9 160 61.2
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 6.8e-51 204.9 121 77.7
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 3.7e-49 199.1 223 50.7
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.4e-48 197.2 186 53.8
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 2.1e-47 193.4 162 62.3
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 2.7e-47 193.0 254 42.9
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.3e-46 190.7 154 56.5
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.9e-46 189.1 144 57.6
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 3.3e-45 186.0 137 60.6
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 6.2e-44 181.8 170 53.5
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 6.2e-44 181.8 201 50.7
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.5e-42 177.2 137 55.5
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 2.2e-41 173.3 243 42.0
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.2e-41 173.3 141 58.9
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 9.2e-40 167.9 169 55.6
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.5e-37 159.8 211 41.7
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.2e-36 157.5 230 43.5
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 8.4e-33 144.8 144 54.9
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.6e-31 140.6 138 55.1
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.6e-31 140.6 123 57.7
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.8e-27 127.1 166 45.8
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 7.6e-26 121.7 160 46.9
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.3e-22 110.2 79 60.8
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 8.7e-22 108.2 145 39.3
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 1.2e-18 97.8 145 35.9
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 1.4e-16 90.9 129 34.9
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.1e-13 81.3 159 31.4
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.1e-11 74.7 156 30.1
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.1e-11 73.2 81 43.2
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.1e-11 73.2 152 31.6
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 9.0e-11 71.6 125 29.6
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 2.0e-10 70.5 83 48.2
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 4.5e-10 69.3 114 32.5
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 4.9e-09 65.9 112 38.4
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.5e-08 62.4 84 41.7


User provided reference genes

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