Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 3.5e-82 308.1 144 100.0
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 6.6e-57 224.2 144 77.1
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 1.5e-45 186.4 92 85.9
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 4.4e-45 184.9 105 77.1
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 1.3e-44 183.3 111 73.0
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 3.7e-44 181.8 105 77.1
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 6.4e-44 181.0 125 69.6
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 6.4e-44 181.0 125 69.6
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 6.4e-44 181.0 140 64.3
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 1.1e-43 180.3 151 61.6
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.1e-43 180.3 94 83.0
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.1e-43 180.3 126 66.7
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 2.4e-43 179.1 123 66.7
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 2.4e-43 179.1 103 79.6
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 3.2e-43 178.7 135 65.9
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 3.2e-43 178.7 132 65.2
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 4.1e-43 178.3 137 62.8
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 4.1e-43 178.3 137 62.8
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 7.0e-43 177.6 144 61.1
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 9.2e-43 177.2 98 77.6
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.2e-42 176.8 137 62.0
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 1.6e-42 176.4 97 83.5
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 2.7e-42 175.6 116 69.8
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 4.6e-42 174.9 96 80.2
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 4.6e-42 174.9 90 82.2
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 4.6e-42 174.9 119 68.1
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 7.8e-42 174.1 122 63.1
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 1.0e-41 173.7 94 80.9
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 1.0e-41 173.7 105 74.3
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 1.7e-41 172.9 95 81.1
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 1.7e-41 172.9 99 77.8
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 3.0e-41 172.2 142 60.6
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 3.9e-41 171.8 100 77.0
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 6.6e-41 171.0 106 72.6
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 6.6e-41 171.0 144 59.7
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 1.1e-40 170.2 95 80.0
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 1.5e-40 169.9 99 75.8
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 1.5e-40 169.9 121 66.1
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 1.5e-40 169.9 155 59.4
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 1.9e-40 169.5 110 70.9
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.9e-40 169.5 131 61.8
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 1.9e-40 169.5 101 76.2
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.9e-40 169.5 101 76.2
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.9e-40 169.5 101 76.2
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 2.5e-40 169.1 99 74.7
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 2.5e-40 169.1 102 74.5
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 2.5e-40 169.1 144 59.7
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 2.5e-40 169.1 144 61.1
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 2.5e-40 169.1 81 88.9
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 4.3e-40 168.3 101 75.2
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 5.6e-40 167.9 164 54.3
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 5.6e-40 167.9 137 59.9
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 7.3e-40 167.5 80 87.5
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 7.3e-40 167.5 102 71.6
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 9.5e-40 167.2 94 76.6
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.2e-39 166.8 107 71.0
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 1.6e-39 166.4 121 63.6
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 1.6e-39 166.4 139 58.3
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 2.1e-39 166.0 116 66.4
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 2.1e-39 166.0 100 75.0
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 3.6e-39 165.2 120 64.2
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 4.7e-39 164.9 99 73.7
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 4.7e-39 164.9 102 73.5
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 1.1e-38 163.7 96 72.9
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 1.4e-38 163.3 79 88.6
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 1.8e-38 162.9 95 76.8
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 2.3e-38 162.5 81 86.4
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 5.2e-38 161.4 110 69.1
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 5.2e-38 161.4 127 59.1
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 5.2e-38 161.4 81 84.0
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 5.2e-38 161.4 80 83.8
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 4.4e-37 158.3 81 85.2
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 9.9e-37 157.1 155 55.5
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 2.2e-36 156.0 123 61.8
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 1.1e-35 153.7 127 58.3
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 1.4e-35 153.3 72 88.9
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 4.1e-35 151.8 149 56.4
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 5.4e-35 151.4 123 57.7
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 1.3e-33 146.7 106 59.4
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 6.6e-33 144.4 81 74.1
Medtr7g082970 Medicago truncatula HOM05D007646 ORTHO05D004022 8.6e-33 144.1 207 43.0
Sabra17G0101300 Salix brachista HOM05D007646 ORTHO05D004022 5.6e-32 141.4 204 41.2
Sabra17G0103900 Salix brachista HOM05D007646 ORTHO05D004022 7.3e-32 141.0 205 41.0
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 3.6e-31 138.7 113 57.5
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 1.1e-30 137.1 81 71.6
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 2.0e-29 132.9 98 59.2
CsaV3_3G017630 Cucumis sativus L. HOM05D007646 ORTHO05D004022 9.6e-24 114.0 51 94.1
Ah.16g101400 Amaranthus hybridus HOM05D007646 ORTHO05D004022 8.1e-23 110.9 55 81.8
CSS0015077 Camellia sinensis var. sinensis HOM05D007646 ORTHO05D004022 1.1e-22 110.5 51 92.2
Peaxi162Scf00343g00059 Petunia axillaris HOM05D007646 ORTHO05D004022 2.4e-22 109.4 51 90.2
MBI10_g07293_MAGBIO Magnolia biondii HOM05D007646 ORTHO05D004022 1.5e-21 106.7 52 86.5
Nn4g24089 Nelumbo nucifera HOM05D007646 ORTHO05D004022 7.1e-19 97.8 81 60.5
ECA246G1632 Erigeron canadensis HOM05D007646 ORTHO05D004022 1.5e-13 80.1 34 94.1
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 5.8e-13 78.2 79 45.6
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.6e-10 70.1 79 41.8
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 2.1e-10 69.7 86 41.9
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 2.7e-10 69.3 79 43.0
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 3.5e-10 68.9 80 41.2
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 6.0e-10 68.2 80 41.2
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 7.9e-10 67.8 82 41.5
MELO3C020311.2 Cucumis melo HOM05D007646 ORTHO05D004022 1.0e-09 67.4 82 46.3
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.3e-09 67.0 89 38.2
Nn3g18065 Nelumbo nucifera HOM05D007646 ORTHO05D004022 1.3e-09 67.0 47 68.1
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.8e-09 66.6 84 39.3
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.8e-09 66.6 84 39.3
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 1.8e-09 66.6 81 39.5
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 2.3e-09 66.2 93 38.7
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 3.0e-09 65.9 80 38.8
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 3.0e-09 65.9 79 39.2
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 3.0e-09 65.9 80 38.8
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 3.0e-09 65.9 89 37.1
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 3.0e-09 65.9 85 37.6
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 3.0e-09 65.9 88 38.6
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 3.9e-09 65.5 79 40.5
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 3.9e-09 65.5 82 36.6
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 3.9e-09 65.5 89 37.1
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 3.9e-09 65.5 80 40.0
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 5.1e-09 65.1 79 39.2
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 5.1e-09 65.1 79 39.2
unitig_748.g8495 Utricularia gibba HOM05D007646 ORTHO05D004022 5.1e-09 65.1 43 65.1
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 6.7e-09 64.7 84 38.1
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 6.7e-09 64.7 84 38.1
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 8.7e-09 64.3 79 39.2
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 8.7e-09 64.3 85 38.8
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 8.7e-09 64.3 81 38.3
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 1.1e-08 63.9 87 36.8
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.1e-08 63.9 79 38.0
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 1.5e-08 63.5 79 39.2
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 1.5e-08 63.5 85 37.6
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 1.5e-08 63.5 79 39.2
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 1.9e-08 63.2 79 36.7
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 1.9e-08 63.2 79 38.0
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.9e-08 63.2 77 40.3
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 2.5e-08 62.8 90 36.7
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 3.3e-08 62.4 79 36.7
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 3.3e-08 62.4 80 40.0
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 3.3e-08 62.4 79 38.0
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 3.3e-08 62.4 79 38.0
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 4.3e-08 62.0 79 38.0
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 4.3e-08 62.0 80 41.2
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 5.6e-08 61.6 87 36.8
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 5.6e-08 61.6 88 35.2
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 5.6e-08 61.6 79 36.7
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 7.4e-08 61.2 93 35.5
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 7.4e-08 61.2 81 37.0
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 7.4e-08 61.2 79 38.0
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 9.6e-08 60.8 86 36.0
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 9.6e-08 60.8 77 40.3
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.3e-07 60.5 79 36.7
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.3e-07 60.5 79 36.7
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 1.6e-07 60.1 79 36.7
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.6e-07 60.1 79 35.4
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 2.1e-07 59.7 91 33.0
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 2.8e-07 59.3 79 38.0
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 3.7e-07 58.9 79 35.4
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 3.7e-07 58.9 79 35.4
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 4.8e-07 58.5 78 41.0
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 6.2e-07 58.2 80 35.0
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 6.2e-07 58.2 90 36.7
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 6.2e-07 58.2 84 36.9
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 8.1e-07 57.8 79 35.4
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 8.1e-07 57.8 77 36.4
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.1e-06 57.4 79 36.7
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 1.4e-06 57.0 79 36.7
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 1.4e-06 57.0 90 36.7
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 1.8e-06 56.6 89 36.0
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 1.8e-06 56.6 79 34.2
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 2.4e-06 56.2 81 37.0
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 4.0e-06 55.5 79 35.4
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 4.0e-06 55.5 79 34.2


User provided reference genes

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