Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 5.5e-36 153.7 73 100.0
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 2.2e-32 141.7 72 91.7
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 2.9e-29 131.3 72 84.7
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.1e-28 129.4 72 80.6
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 2.5e-28 128.3 72 79.2
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.7e-24 115.5 72 69.4
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 1.7e-24 115.5 73 71.2
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 4.9e-24 114.0 72 69.4
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 7.0e-23 110.2 73 68.5
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 9.1e-23 109.8 73 68.5
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 1.6e-22 109.0 73 68.5
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 3.5e-22 107.8 73 68.5
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 1.7e-21 105.5 73 65.8
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.1e-20 102.8 73 64.4
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 5.5e-20 100.5 73 63.0
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.4e-18 95.9 80 62.5
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 1.8e-18 95.5 72 58.3
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 1.8e-18 95.5 72 59.7
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 5.2e-18 94.0 73 57.5
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 5.2e-18 94.0 72 55.6
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 6.8e-18 93.6 73 56.2
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 6.8e-18 93.6 72 58.3
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 6.8e-18 93.6 73 57.5
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 8.9e-18 93.2 72 56.9
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 1.5e-17 92.4 72 58.3
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.5e-17 92.4 73 56.2
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 2.0e-17 92.0 73 56.2
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 3.4e-17 91.3 72 55.6
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 3.4e-17 91.3 72 55.6
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 3.4e-17 91.3 72 55.6
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 3.4e-17 91.3 72 55.6
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 3.4e-17 91.3 73 56.2
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 3.4e-17 91.3 73 56.2
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 4.4e-17 90.9 72 56.9
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 5.7e-17 90.5 73 56.2
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 5.7e-17 90.5 73 54.8
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 7.5e-17 90.1 72 56.9
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 7.5e-17 90.1 72 54.2
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 9.8e-17 89.7 72 54.2
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 9.8e-17 89.7 72 54.2
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.3e-16 89.4 72 55.6
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 1.3e-16 89.4 72 51.4
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 1.3e-16 89.4 72 54.2
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 1.3e-16 89.4 72 54.2
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 1.7e-16 89.0 72 54.2
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.7e-16 89.0 72 52.8
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.7e-16 89.0 72 52.8
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 1.7e-16 89.0 72 52.8
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 1.7e-16 89.0 72 52.8
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.7e-16 89.0 72 52.8
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 2.2e-16 88.6 72 52.8
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.2e-16 88.6 73 58.9
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 2.8e-16 88.2 72 52.8
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 3.7e-16 87.8 72 52.8
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 3.7e-16 87.8 72 51.4
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 3.7e-16 87.8 72 55.6
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 3.7e-16 87.8 72 54.2
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 3.7e-16 87.8 72 52.8
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 4.9e-16 87.4 72 51.4
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 4.9e-16 87.4 72 51.4
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 6.3e-16 87.0 72 54.2
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 6.3e-16 87.0 69 55.1
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 6.3e-16 87.0 73 52.1
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 8.3e-16 86.7 72 52.8
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 8.3e-16 86.7 72 54.2
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.1e-15 86.3 72 54.2
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.1e-15 86.3 72 52.8
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 1.1e-15 86.3 72 54.2
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 1.1e-15 86.3 72 51.4
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 1.1e-15 86.3 73 52.1
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.1e-15 86.3 73 52.1
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.4e-15 85.9 72 51.4
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.4e-15 85.9 72 51.4
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 1.4e-15 85.9 72 52.8
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 1.8e-15 85.5 72 54.2
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 1.8e-15 85.5 73 52.1
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 2.4e-15 85.1 68 57.4
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.4e-15 85.1 62 66.1
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.4e-15 85.1 72 50.0
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 3.2e-15 84.7 72 52.8
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 3.2e-15 84.7 72 50.0
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 3.2e-15 84.7 72 51.4
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 3.2e-15 84.7 78 50.0
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 4.1e-15 84.3 70 52.9
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 4.1e-15 84.3 72 51.4
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 4.1e-15 84.3 72 52.8
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 4.1e-15 84.3 72 51.4
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 4.1e-15 84.3 73 54.8
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 5.4e-15 84.0 73 53.4
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 7.0e-15 83.6 69 53.6
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 9.2e-15 83.2 73 52.1
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 9.2e-15 83.2 72 50.0
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 9.2e-15 83.2 72 50.0
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 1.6e-14 82.4 72 52.8
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 2.0e-14 82.0 72 51.4
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 2.0e-14 82.0 72 50.0
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 2.0e-14 82.0 73 52.1
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 2.7e-14 81.6 72 51.4
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 3.5e-14 81.3 73 50.7
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 3.5e-14 81.3 73 47.9
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 4.6e-14 80.9 72 50.0
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 5.9e-14 80.5 70 51.4
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 5.9e-14 80.5 70 51.4
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 1.0e-13 79.7 58 65.5
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 1.3e-13 79.3 71 50.7
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 2.9e-13 78.2 73 49.3
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 3.9e-13 77.8 72 47.2
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 3.9e-13 77.8 69 49.3
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 5.0e-13 77.4 72 47.2
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.3e-12 74.7 73 45.2
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.6e-11 72.4 61 54.1
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 3.6e-11 71.2 74 48.6
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 4.7e-11 70.9 70 47.1
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 8.0e-11 70.1 35 82.9
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 4.0e-10 67.8 55 52.7
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 5.2e-10 67.4 73 46.6
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 5.2e-10 67.4 74 47.3
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 6.8e-10 67.0 72 47.2
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 6.8e-10 67.0 74 47.3
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.0e-09 65.5 52 57.7
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 3.4e-09 64.7 73 46.6
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 5.8e-09 63.9 57 47.4
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 9.8e-09 63.2 73 41.1
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 9.8e-09 63.2 73 41.1
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 9.8e-09 63.2 55 50.9
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 8.3e-08 60.1 74 39.2
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 8.3e-08 60.1 73 38.4
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.2e-07 58.2 52 48.1
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 2.7e-06 55.1 72 40.3
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 3.5e-06 54.7 49 51.0


User provided reference genes

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