Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 2.8e-299 1031.2 517 100.0
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 1.1e-276 956.1 506 96.0
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 1.2e-257 892.9 503 86.3
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 2.0e-244 849.0 504 81.3
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 4.7e-222 774.6 506 75.7
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 2.4e-218 762.3 504 73.8
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 9.1e-218 760.4 489 74.2
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 1.6e-217 759.6 506 72.9
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 5.9e-217 757.7 506 73.1
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 7.7e-217 757.3 504 73.0
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 2.9e-216 755.4 506 71.5
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 3.8e-216 755.0 506 72.9
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 5.0e-216 754.6 483 75.6
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 8.5e-216 753.8 504 73.0
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 3.2e-215 751.9 504 72.8
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 5.5e-215 751.1 475 75.8
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 7.2e-215 750.7 506 71.5
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 7.2e-215 750.7 503 71.8
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 7.2e-215 750.7 478 75.7
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 2.8e-214 748.8 507 72.0
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 3.6e-214 748.4 478 74.3
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 1.0e-213 746.9 488 73.2
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 4.0e-213 745.0 506 71.1
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 1.5e-212 743.0 504 71.2
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 2.0e-212 742.7 503 70.8
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.0e-212 742.7 503 71.0
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 5.7e-212 741.1 506 71.1
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 7.5e-212 740.7 504 70.8
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 7.5e-212 740.7 506 70.8
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 7.5e-212 740.7 506 70.9
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 2.8e-211 738.8 483 74.3
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.8e-211 738.8 503 70.8
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 1.8e-210 736.1 504 71.8
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 7.0e-210 734.2 504 71.2
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 1.2e-209 733.4 504 70.6
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 2.0e-209 732.6 507 71.6
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 3.5e-209 731.9 504 69.4
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 3.5e-209 731.9 508 70.5
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 7.8e-209 730.7 505 69.3
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 7.8e-209 730.7 477 72.3
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 2.3e-208 729.2 481 71.7
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 2.9e-208 728.8 505 69.3
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.8e-208 728.4 483 72.0
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 6.6e-208 727.6 509 69.2
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 8.6e-208 727.2 481 72.1
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 8.6e-208 727.2 481 71.7
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 3.3e-207 725.3 506 69.4
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 4.3e-207 724.9 506 69.4
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 7.3e-207 724.2 508 70.9
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 6.1e-206 721.1 504 68.7
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 8.0e-206 720.7 464 74.6
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 8.0e-206 720.7 479 71.6
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 8.0e-206 720.7 505 67.5
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 8.0e-206 720.7 506 70.8
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 8.0e-206 720.7 507 70.0
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 3.0e-205 718.8 504 69.2
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 6.8e-205 717.6 507 68.2
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 6.8e-205 717.6 479 72.0
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 1.2e-204 716.8 506 67.8
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 2.6e-204 715.7 482 71.8
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 3.4e-204 715.3 506 67.6
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 4.4e-204 714.9 477 72.5
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.3e-203 713.4 504 67.7
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 1.3e-203 713.4 504 69.0
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.1e-202 710.3 506 67.4
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 1.4e-202 709.9 468 70.5
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 2.4e-202 709.1 503 67.6
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 3.2e-202 708.8 483 70.2
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 5.2e-197 691.4 504 68.1
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 9.8e-196 687.2 481 70.1
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.3e-195 686.8 439 74.9
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.7e-195 686.4 439 74.5
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 6.4e-195 684.5 503 65.8
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 3.5e-193 678.7 480 65.8
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 6.0e-193 677.9 470 67.0
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 7.8e-193 677.6 480 66.2
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.7e-192 676.4 497 64.6
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 1.7e-192 676.4 437 73.2
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 2.3e-192 676.0 470 67.0
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 5.0e-192 674.9 480 65.8
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 5.0e-192 674.9 504 66.9
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 1.9e-191 672.9 439 71.8
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 2.5e-191 672.5 483 65.6
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 2.5e-191 672.5 483 65.6
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 2.5e-191 672.5 483 65.6
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 4.3e-191 671.8 475 65.7
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 5.6e-191 671.4 465 68.6
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 7.3e-191 671.0 482 64.9
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 9.5e-191 670.6 479 66.6
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 2.8e-190 669.1 481 67.8
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 3.6e-190 668.7 439 74.5
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.8e-189 666.4 504 66.1
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 2.0e-188 662.9 470 67.7
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 2.6e-188 662.5 504 64.1
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 5.8e-188 661.4 514 62.6
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.1e-186 657.1 479 65.8
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.6e-185 653.3 467 66.8
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 7.8e-185 651.0 463 66.1
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 7.8e-185 651.0 504 65.5
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 6.2e-182 641.3 473 67.4
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.4e-181 640.2 476 63.7
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 9.9e-180 634.0 470 63.8
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 3.0e-176 622.5 401 73.3
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.9e-175 619.8 452 65.0
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 1.9e-175 619.8 418 71.1
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 2.5e-175 619.4 468 65.0
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 4.7e-174 615.1 464 64.4
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.7e-171 606.7 479 63.3
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 7.8e-169 597.8 487 63.4
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.7e-168 596.7 383 73.4
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 1.2e-161 573.9 437 64.5
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 2.3e-152 543.1 471 54.6
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 2.0e-148 530.0 468 55.8
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 5.8e-148 528.5 475 55.4
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 5.1e-144 515.4 462 54.1
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 6.7e-136 488.4 342 69.6
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 1.1e-135 487.6 313 73.8
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 4.3e-135 485.7 339 67.8
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 6.3e-134 481.9 323 70.9
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 2.0e-132 476.9 483 49.7
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 1.5e-127 460.7 248 92.3
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 5.5e-122 442.2 290 73.8
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.8e-120 437.2 290 72.4
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 3.1e-117 426.4 466 48.1
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 1.2e-113 414.5 282 70.9
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 1.0e-112 411.4 380 55.8
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 6.5e-99 365.5 539 41.4
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 5.7e-95 352.4 604 37.6
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 1.3e-83 314.7 465 41.7
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 6.2e-81 305.8 452 41.2
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 5.1e-67 259.6 155 78.7
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 2.7e-52 210.7 241 49.4
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 4.6e-52 209.9 213 50.7
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 8.7e-43 179.1 175 56.0
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 5.6e-42 176.4 308 38.0
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 8.1e-41 172.6 87 95.4
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 9.3e-37 159.1 100 81.0
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.3e-35 154.5 108 70.4
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 1.9e-34 151.4 117 64.1
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 2.9e-30 137.5 237 37.1
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 3.8e-22 110.5 81 65.4
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 6.7e-19 99.8 90 57.8
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 1.1e-16 92.4 68 60.3
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 1.8e-16 91.7 68 67.6
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 3.5e-07 60.8 53 56.6


User provided reference genes

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