Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 9.4e-156 553.5 286 100.0
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.3e-59 234.2 260 58.1
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.8e-45 187.2 300 47.7
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 9.1e-42 174.9 286 47.2
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 1.7e-40 170.6 282 45.0
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 8.8e-37 158.3 276 44.9
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 2.0e-36 157.1 279 44.8
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 4.4e-36 156.0 278 46.4
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.4e-34 151.0 292 42.8
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 5.3e-34 149.1 289 40.1
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.2e-33 147.9 279 41.9
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 1.3e-32 144.4 288 40.3
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 1.7e-32 144.1 282 42.6
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.7e-32 144.1 208 50.0
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.7e-32 144.1 279 42.3
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.9e-32 143.3 274 40.5
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 6.5e-32 142.1 271 42.8
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 8.5e-32 141.7 279 42.3
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.2e-31 138.7 279 39.4
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 7.2e-31 138.7 268 41.4
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 1.2e-30 137.9 276 40.6
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 1.6e-30 137.5 276 42.8
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 2.7e-30 136.7 263 40.7
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.6e-30 136.3 279 39.8
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 6.1e-30 135.6 277 41.9
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 8.0e-30 135.2 279 40.9
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 8.0e-30 135.2 279 40.9
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.0e-29 134.8 278 41.7
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.4e-29 134.4 274 39.8
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 1.8e-29 134.0 172 53.5
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 3.0e-29 133.3 267 40.1
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 3.0e-29 133.3 279 42.3
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.3e-28 129.8 274 39.4
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 4.4e-28 129.4 279 37.6
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 4.4e-28 129.4 265 40.4
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.3e-27 127.9 302 39.1
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 4.8e-27 125.9 284 38.4
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 6.3e-27 125.6 227 42.3
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 8.2e-27 125.2 269 39.4
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.8e-26 124.0 259 38.2
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 3.1e-26 123.2 285 38.2
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 3.1e-26 123.2 286 38.5
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 4.1e-26 122.9 277 39.0
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 4.1e-26 122.9 281 35.6
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.3e-26 122.5 256 39.5
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 5.3e-26 122.5 276 36.6
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 2.0e-25 120.6 269 37.2
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 4.5e-25 119.4 271 38.0
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 1.7e-24 117.5 273 38.8
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 1.7e-24 117.5 251 37.5
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.2e-24 117.1 281 37.7
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.2e-24 117.1 264 38.3
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 3.8e-24 116.3 262 39.7
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 5.0e-24 115.9 242 38.0
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 5.0e-24 115.9 278 34.9
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 6.5e-24 115.5 294 35.7
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 8.5e-24 115.2 273 37.7
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 8.5e-24 115.2 278 34.9
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.1e-23 114.8 274 38.3
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 1.1e-23 114.8 218 41.3
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.9e-23 114.0 281 39.9
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 9.4e-23 111.7 281 35.2
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.6e-22 110.9 239 38.1
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 3.6e-22 109.8 274 35.8
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 3.6e-22 109.8 288 36.8
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 3.6e-22 109.8 288 36.5
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 4.7e-22 109.4 265 36.6
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.4e-21 107.8 233 41.2
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 2.3e-21 107.1 243 36.6
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 2.0e-20 104.0 265 36.6
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 2.0e-20 104.0 277 37.2
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 3.4e-20 103.2 278 36.7
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 7.5e-20 102.1 262 36.3
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 6.3e-19 99.0 236 38.1
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 8.3e-19 98.6 198 42.4
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 3.1e-18 96.7 249 36.9
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 4.1e-18 96.3 273 33.0
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 4.1e-18 96.3 164 45.7
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 5.4e-18 95.9 201 37.8
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 7.0e-18 95.5 265 35.8
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 2.7e-17 93.6 218 37.2
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 3.5e-17 93.2 240 37.5
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.3e-16 91.3 213 38.5
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.2e-16 90.5 243 37.4
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 2.2e-16 90.5 201 37.8
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.1e-15 88.2 122 45.1
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.9e-15 87.4 115 47.0
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 3.2e-15 86.7 208 38.0
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 5.5e-15 85.9 134 42.5
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 7.2e-15 85.5 111 46.8
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.2e-15 85.5 111 46.8
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.2e-15 85.5 114 45.6
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.2e-15 85.5 111 46.8
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.6e-14 84.3 122 44.3
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.8e-13 80.9 241 30.7
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 3.0e-13 80.1 171 40.9
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 3.0e-13 80.1 73 63.0
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 4.0e-13 79.7 106 43.4
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 3.4e-12 76.6 241 30.3
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 4.4e-12 76.3 72 51.4
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 9.8e-12 75.1 220 30.9
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 9.8e-12 75.1 256 31.6
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.3e-11 74.7 250 32.8
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 2.8e-11 73.6 234 32.1
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 3.7e-11 73.2 258 32.2
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 4.9e-11 72.8 172 38.4
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 4.9e-11 72.8 68 58.8
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 6.3e-11 72.4 250 32.8
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 6.3e-11 72.4 249 30.9
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 6.3e-11 72.4 102 43.1
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 6.3e-11 72.4 80 48.8
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 8.3e-11 72.0 86 47.7
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 1.8e-10 70.9 248 31.5
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 4.1e-10 69.7 68 55.9
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 4.1e-10 69.7 252 29.8
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 5.4e-10 69.3 259 31.7
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 5.4e-10 69.3 247 32.4
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 5.4e-10 69.3 238 31.9
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 7.0e-10 68.9 178 36.0
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 9.2e-10 68.6 68 54.4
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 1.6e-09 67.8 186 33.9
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.6e-09 67.8 247 30.4
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.0e-09 67.4 258 28.3
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 2.0e-09 67.4 258 28.3
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 2.7e-09 67.0 69 56.5
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 3.5e-09 66.6 254 31.5
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 5.9e-09 65.9 95 40.0
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 5.9e-09 65.9 189 31.7
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 5.9e-09 65.9 69 56.5
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 5.9e-09 65.9 240 29.6
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.0e-08 65.1 227 32.2
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 1.0e-08 65.1 238 30.3
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 1.3e-08 64.7 216 33.3
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.9e-08 63.5 219 26.9
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.9e-08 63.5 229 31.0
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 3.8e-08 63.2 249 28.5
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 5.0e-08 62.8 96 43.8
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 5.0e-08 62.8 234 32.1
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 6.6e-08 62.4 72 48.6
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.1e-07 61.6 229 30.6
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 1.1e-07 61.6 217 32.3
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 1.1e-07 61.6 209 33.0
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.1e-07 61.6 173 31.8
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.9e-07 60.8 216 30.1
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 2.5e-07 60.5 66 56.1
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.5e-07 60.5 64 53.1
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 3.3e-07 60.1 191 35.6
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 5.6e-07 59.3 178 32.6
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 7.3e-07 58.9 66 54.5
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 7.3e-07 58.9 141 34.0
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 7.3e-07 58.9 214 27.6
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 1.2e-06 58.2 245 32.7
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.2e-06 58.2 89 44.9
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.6e-06 57.8 89 46.1
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 1.6e-06 57.8 95 41.1
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 2.8e-06 57.0 200 30.0
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 3.6e-06 56.6 53 58.5
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 4.7e-06 56.2 251 29.1
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 4.7e-06 56.2 232 27.6
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 6.1e-06 55.8 155 32.9


User provided reference genes

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