Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 1.0e-91 340.1 178 100.0
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 2.2e-62 242.7 178 74.7
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 1.5e-58 229.9 186 69.4
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 2.8e-49 199.1 183 67.8
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 1.1e-42 177.2 187 55.1
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 4.3e-42 175.3 187 52.9
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 4.3e-42 175.3 187 52.9
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 4.3e-42 175.3 187 52.9
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.6e-41 173.3 185 55.1
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 4.0e-40 168.7 177 54.8
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.5e-39 166.8 179 53.1
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 1.0e-38 164.1 188 52.1
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 3.8e-38 162.2 180 50.6
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 3.8e-38 162.2 189 52.4
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 4.6e-36 155.2 191 52.9
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 7.9e-36 154.5 185 54.1
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 1.0e-35 154.1 187 50.8
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 2.3e-35 152.9 187 52.9
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 3.0e-35 152.5 180 56.1
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 5.1e-35 151.8 174 55.2
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 4.3e-34 148.7 181 50.3
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 5.7e-34 148.3 181 51.4
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 9.7e-34 147.5 178 52.2
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 9.7e-34 147.5 183 50.8
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.6e-33 146.7 188 51.1
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 6.3e-33 144.8 186 53.2
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 1.1e-32 144.1 180 51.1
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 1.4e-32 143.7 186 49.5
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 1.4e-32 143.7 176 53.4
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 2.4e-32 142.9 184 52.7
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 3.1e-32 142.5 185 51.4
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 4.1e-32 142.1 190 48.4
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 6.9e-32 141.4 194 49.5
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 9.0e-32 141.0 179 52.5
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 1.2e-31 140.6 188 49.5
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 3.4e-31 139.0 174 52.3
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.0e-30 137.5 185 50.8
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 1.3e-30 137.1 187 48.1
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 1.3e-30 137.1 175 53.7
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 1.7e-30 136.7 180 48.3
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 1.7e-30 136.7 189 50.8
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 1.7e-30 136.7 190 50.0
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.7e-30 136.7 191 51.8
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 2.2e-30 136.3 183 51.9
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 3.8e-30 135.6 178 50.0
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 5.0e-30 135.2 177 49.7
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 6.5e-30 134.8 189 47.6
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 1.1e-29 134.0 179 50.3
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 1.1e-29 134.0 185 49.7
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 1.1e-29 134.0 190 48.9
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 2.5e-29 132.9 178 51.7
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 2.5e-29 132.9 178 51.7
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 2.5e-29 132.9 187 48.1
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 3.2e-29 132.5 187 48.1
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 4.2e-29 132.1 187 48.1
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.5e-29 131.7 188 50.0
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 7.2e-29 131.3 190 49.5
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 7.2e-29 131.3 172 48.3
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 7.2e-29 131.3 188 51.6
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 9.3e-29 131.0 185 47.0
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 1.2e-28 130.6 181 47.5
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 1.6e-28 130.2 112 64.3
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 2.1e-28 129.8 177 48.6
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 2.7e-28 129.4 175 50.9
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 7.9e-28 127.9 186 44.1
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 1.0e-27 127.5 177 48.6
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 1.0e-27 127.5 188 50.5
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.3e-27 127.1 195 48.7
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 1.3e-27 127.1 190 48.9
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 1.3e-27 127.1 186 46.2
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 1.8e-27 126.7 179 49.7
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 1.8e-27 126.7 184 49.5
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 1.8e-27 126.7 186 46.2
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 1.8e-27 126.7 182 46.2
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 2.3e-27 126.3 188 47.3
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.3e-27 126.3 197 45.7
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 3.9e-27 125.6 181 48.1
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 4.3e-26 122.1 179 48.6
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 7.4e-26 121.3 195 44.1
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 7.4e-26 121.3 181 47.0
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 7.4e-26 121.3 177 45.8
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 9.7e-26 120.9 171 48.0
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 1.3e-25 120.6 187 45.5
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.7e-25 120.2 173 46.8
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.8e-25 119.4 206 45.6
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 4.8e-25 118.6 190 48.4
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 4.8e-25 118.6 182 45.6
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 4.8e-25 118.6 190 45.8
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.1e-24 117.5 170 44.7
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 6.9e-24 114.8 99 62.6
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 9.1e-24 114.4 167 50.3
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 1.2e-23 114.0 187 43.9
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 2.0e-23 113.2 165 46.7
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 2.6e-23 112.8 180 44.4
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.3e-22 110.5 170 49.4
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 2.9e-22 109.4 170 43.5
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 8.5e-22 107.8 165 44.2
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 3.2e-21 105.9 180 45.0
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 3.2e-21 105.9 170 48.2
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 5.5e-21 105.1 177 42.9
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 7.2e-21 104.8 163 44.2
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 9.4e-21 104.4 193 41.5
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.1e-20 103.2 108 57.4
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 3.6e-20 102.4 177 43.5
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 3.6e-20 102.4 177 43.5
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 3.6e-20 102.4 177 43.5
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 3.6e-20 102.4 189 45.0
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 4.7e-20 102.1 181 39.8
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 6.1e-20 101.7 177 43.5
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 6.1e-20 101.7 189 43.4
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 7.9e-20 101.3 187 41.2
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 1.0e-19 100.9 176 42.6
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.0e-19 100.9 188 42.0
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 1.4e-19 100.5 163 42.9
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 2.6e-18 96.3 230 36.1
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 9.7e-18 94.4 143 46.2
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 9.7e-18 94.4 75 61.3
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 4.8e-17 92.0 155 43.2
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 6.9e-16 88.2 82 57.3
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 9.1e-16 87.8 133 45.1
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 1.5e-15 87.0 131 46.6
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.5e-15 87.0 176 38.6
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 2.9e-14 82.8 131 44.3
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 5.0e-14 82.0 171 39.8
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.1e-12 75.1 92 44.6
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.1e-12 75.1 92 44.6
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 3.0e-11 72.8 151 37.7
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 4.4e-10 68.9 170 37.1
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 5.7e-10 68.6 165 38.2
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 1.3e-09 67.4 177 35.0
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 1.7e-09 67.0 178 30.9
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 1.7e-09 67.0 136 38.2
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.2e-09 66.6 178 30.9
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 1.4e-08 63.9 131 38.9
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 3.1e-08 62.8 204 33.8
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 3.5e-07 59.3 216 33.8
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 1.0e-06 57.8 96 39.6
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 2.2e-06 56.6 135 38.5
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 3.8e-06 55.8 59 57.6
arahy.Tifrunner.gnm1.ann1.MN3VL9 Arachis hypogaea HOM05D004998 ORTHO05D006104 5.0e-06 55.5 88 43.2


User provided reference genes

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