Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 5.4e-139 497.7 254 100.0
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 1.1e-112 410.2 258 81.0
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 7.4e-112 407.5 254 81.9
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 6.3e-95 351.3 250 70.4
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 1.4e-91 340.1 250 70.0
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 3.0e-89 332.4 257 66.9
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 1.1e-88 330.5 250 68.4
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 5.7e-88 328.2 261 65.5
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 5.7e-88 328.2 257 65.8
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 9.7e-88 327.4 259 66.4
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.3e-87 327.0 259 66.4
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 2.4e-86 322.8 256 66.4
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 1.2e-85 320.5 250 66.0
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 1.6e-85 320.1 256 64.1
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 2.6e-85 319.3 255 63.5
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 1.0e-84 317.4 255 64.7
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 3.8e-84 315.5 255 64.3
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 5.0e-84 315.1 256 64.5
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 5.0e-84 315.1 255 62.7
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 6.5e-84 314.7 256 65.6
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 6.5e-84 314.7 255 62.7
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 1.5e-83 313.5 256 64.1
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 1.9e-83 313.2 257 61.9
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 1.9e-83 313.2 260 61.5
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 7.2e-83 311.2 258 62.4
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 2.7e-82 309.3 255 63.1
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 3.6e-82 308.9 255 62.7
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 6.1e-82 308.1 252 64.7
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.8e-81 306.6 257 62.3
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 5.2e-81 305.1 257 62.3
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 5.2e-81 305.1 255 61.6
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 6.7e-81 304.7 259 62.5
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 6.7e-81 304.7 258 59.3
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 6.7e-81 304.7 257 62.3
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 2.6e-80 302.8 260 62.3
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 3.3e-80 302.4 265 63.0
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 7.5e-80 301.2 285 60.0
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 1.7e-79 300.1 256 60.2
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 3.7e-79 298.9 254 61.0
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 3.7e-79 298.9 255 60.4
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 4.8e-79 298.5 257 62.3
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 1.1e-78 297.4 261 61.3
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 1.8e-78 296.6 255 60.8
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 2.4e-78 296.2 278 56.5
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 3.5e-77 292.4 255 58.8
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 7.7e-77 291.2 255 58.0
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 7.7e-77 291.2 268 59.7
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 1.3e-76 290.4 258 60.1
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 2.2e-76 289.7 201 70.6
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 6.5e-76 288.1 261 59.4
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 8.5e-76 287.7 255 56.9
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 8.5e-76 287.7 259 57.9
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 1.9e-75 286.6 257 59.9
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 2.5e-75 286.2 258 60.5
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 2.5e-75 286.2 258 59.3
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 3.2e-75 285.8 255 61.2
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 4.2e-75 285.4 256 57.0
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 5.5e-75 285.0 257 59.1
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 9.4e-75 284.3 258 58.5
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 9.4e-75 284.3 258 59.7
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 2.1e-74 283.1 253 58.5
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 4.7e-74 282.0 257 60.7
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 6.1e-74 281.6 256 59.8
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 1.4e-73 280.4 266 56.8
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 2.3e-73 279.6 256 59.8
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 5.2e-73 278.5 265 54.7
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 5.2e-73 278.5 253 58.9
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 8.8e-73 277.7 266 56.4
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 1.5e-72 276.9 253 59.3
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 4.8e-71 271.9 250 56.0
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 5.4e-70 268.5 281 54.8
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 7.0e-70 268.1 254 57.9
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 2.0e-69 266.5 255 56.1
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 2.0e-69 266.5 255 57.3
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 3.5e-69 265.8 254 57.1
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 1.3e-68 263.8 253 53.8
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 2.2e-68 263.1 278 54.0
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 3.8e-68 262.3 254 53.9
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 8.5e-68 261.2 253 54.9
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 3.2e-67 259.2 257 53.3
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 3.2e-67 259.2 256 53.5
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 1.2e-66 257.3 255 55.3
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 1.2e-66 257.3 254 55.9
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 2.7e-66 256.1 251 53.8
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 2.0e-64 250.0 267 50.9
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 4.4e-64 248.8 214 63.1
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 2.8e-63 246.1 252 52.4
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 4.9e-63 245.4 256 51.6
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 6.3e-63 245.0 255 52.9
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.2e-61 240.7 193 67.9
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 1.1e-59 234.2 260 49.6
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 1.5e-59 233.8 260 51.2
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 3.3e-59 232.6 264 49.2
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.5e-56 223.8 255 52.2
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 8.3e-55 218.0 304 44.4
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 4.1e-54 215.7 246 47.6
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 2.1e-50 203.4 159 67.9
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 6.4e-47 191.8 154 61.0
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 1.7e-39 167.2 194 48.5
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 4.9e-39 165.6 246 41.9
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 2.2e-31 140.2 144 57.6
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 7.8e-29 131.7 242 35.5
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 1.3e-28 131.0 251 36.7
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 3.5e-21 106.3 129 48.1
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 3.3e-19 99.8 92 48.9
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 2.7e-13 80.1 59 52.5
SMO290G0011 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 7.4e-11 72.0 219 28.8
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 7.4e-11 72.0 219 29.2
HPP92_017340 Vanilla planifolia HOM05D002897 ORTHO05D008718 2.4e-09 67.0 110 39.1
BolC6t39233H Brassica oleracea HOM05D002897 ORTHO05D008718 2.2e-07 60.5 48 60.4
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 3.2e-06 56.6 113 34.5


User provided reference genes

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