Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 5.4e-179 630.9 333 100.0
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 1.5e-133 479.9 329 80.2
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 2.2e-132 476.1 359 73.3
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.3e-121 440.3 336 70.2
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 7.4e-120 434.5 332 70.5
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 7.4e-120 434.5 325 72.3
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 1.6e-119 433.3 336 70.8
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 1.4e-118 430.3 283 76.0
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 5.3e-118 428.3 336 69.3
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 9.0e-118 427.6 288 74.3
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 1.5e-117 426.8 291 73.2
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 3.4e-117 425.6 277 77.3
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 4.5e-117 425.2 303 71.6
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 5.9e-117 424.9 303 71.9
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 5.9e-117 424.9 281 75.8
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 7.7e-117 424.5 289 75.8
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.0e-116 424.1 303 72.3
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 3.8e-116 422.2 299 72.2
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 3.8e-116 422.2 326 69.3
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 5.0e-116 421.8 333 67.3
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 6.5e-116 421.4 277 76.5
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 1.1e-115 420.6 278 77.3
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 1.4e-115 420.2 277 76.2
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 1.4e-115 420.2 342 67.8
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 2.5e-115 419.5 332 67.2
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 3.2e-115 419.1 333 68.8
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 3.2e-115 419.1 341 67.2
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 7.2e-115 417.9 334 66.8
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 7.2e-115 417.9 333 68.5
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 2.7e-114 416.0 321 68.5
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 4.6e-114 415.2 280 74.3
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 4.6e-114 415.2 279 73.8
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 6.1e-114 414.8 279 75.6
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 6.1e-114 414.8 328 67.4
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.0e-113 414.1 280 72.9
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 1.8e-113 413.3 296 70.9
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 8.8e-113 411.0 327 67.9
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 1.5e-112 410.2 293 73.4
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 3.3e-112 409.1 295 70.2
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 9.7e-112 407.5 306 69.0
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 3.7e-111 405.6 280 72.5
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 1.1e-110 404.1 328 63.4
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 1.4e-110 403.7 275 74.2
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 1.4e-110 403.7 342 65.2
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 2.4e-110 402.9 280 72.1
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 3.1e-110 402.5 330 65.5
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 1.2e-109 400.6 332 64.5
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 4.5e-109 398.7 282 73.0
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 4.5e-109 398.7 283 72.8
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 1.3e-108 397.1 280 70.0
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.3e-108 397.1 344 61.9
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 2.2e-108 396.4 325 63.4
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 3.8e-108 395.6 330 66.4
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 3.8e-108 395.6 281 69.4
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 6.5e-108 394.8 279 70.6
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 6.5e-108 394.8 301 68.4
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 6.5e-108 394.8 325 63.7
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 1.4e-107 393.7 328 66.2
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 1.9e-107 393.3 277 70.0
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 1.9e-107 393.3 330 62.4
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 4.2e-107 392.1 333 65.8
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 4.2e-107 392.1 330 63.9
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 4.7e-106 388.7 330 61.8
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 1.0e-105 387.5 284 71.1
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 3.0e-105 386.0 288 68.8
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 2.6e-104 382.9 257 74.3
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.8e-102 376.7 351 61.8
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 2.0e-101 373.2 366 59.6
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.7e-100 370.2 279 69.2
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 1.1e-99 367.5 341 60.4
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 2.7e-98 362.8 303 65.3
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 7.4e-96 354.8 251 70.5
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 2.8e-95 352.8 279 68.5
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 6.3e-95 351.7 324 62.0
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 8.2e-95 351.3 316 60.8
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 8.2e-95 351.3 291 63.9
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 7.7e-93 344.7 277 65.7
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 5.5e-91 338.6 337 60.2
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 1.3e-87 327.4 306 59.5
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 1.3e-87 327.4 331 57.7
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 1.1e-86 324.3 337 58.5
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.3e-84 317.4 275 62.9
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 2.5e-83 313.2 284 62.7
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 5.5e-83 312.0 313 57.5
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 1.6e-82 310.5 243 70.0
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.0e-81 307.8 291 57.4
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.6e-80 303.1 337 52.5
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 2.6e-80 303.1 335 53.1
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 1.3e-79 300.8 289 53.3
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.1e-78 297.7 340 52.6
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 4.1e-78 295.8 197 76.6
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 1.0e-76 291.2 247 66.4
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 7.2e-75 285.0 279 57.7
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 7.2e-75 285.0 278 53.2
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 6.1e-74 282.0 198 72.2
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 5.7e-72 275.4 296 52.0
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 4.1e-70 269.2 274 53.6
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 7.0e-70 268.5 269 53.9
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.1e-65 253.1 269 51.7
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 8.9e-65 251.5 164 78.7
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 5.8e-64 248.8 260 55.4
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 6.6e-60 235.3 207 63.8
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 3.7e-55 219.5 162 69.1
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 2.4e-54 216.9 197 57.9
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 7.1e-54 215.3 317 44.5
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 4.7e-42 176.0 115 75.7
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 5.2e-41 172.6 144 65.3
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 3.8e-39 166.4 128 71.9
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 1.3e-36 157.9 186 51.6
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 5.8e-32 142.5 185 48.1
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 7.6e-32 142.1 79 96.2
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 3.8e-31 139.8 182 47.8
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 7.1e-30 135.6 247 32.4
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 1.5e-27 127.9 225 41.3
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 2.5e-27 127.1 206 42.7
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 7.3e-27 125.6 208 42.3
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 1.6e-26 124.4 283 29.7
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 6.2e-26 122.5 104 64.4
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 1.1e-25 121.7 79 70.9
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 3.1e-25 120.2 137 52.6
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 5.8e-24 115.9 243 29.6
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 7.6e-24 115.5 210 41.0
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 4.9e-23 112.8 96 61.5
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 3.2e-22 110.2 80 68.8
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 2.7e-21 107.1 72 70.8
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.9e-19 100.9 67 71.6
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 1.5e-16 91.3 90 50.0
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 8.4e-15 85.5 151 39.1
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 2.7e-13 80.5 65 66.2
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 3.5e-13 80.1 128 39.1
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 2.5e-11 73.9 61 63.9
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 7.4e-11 72.4 78 53.8
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 2.1e-10 70.9 57 68.4
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 2.0e-08 64.3 34 82.4
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 3.4e-08 63.5 34 82.4
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 1.3e-07 61.6 56 51.8
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 2.9e-07 60.5 148 27.0
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 3.8e-07 60.1 34 76.5


User provided reference genes

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