Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 4.9e-94 347.8 181 100.0
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 7.2e-69 264.2 182 78.6
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 1.4e-64 250.0 183 76.5
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 5.2e-43 178.3 186 61.8
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 7.0e-32 141.4 196 49.0
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 2.0e-31 139.8 218 45.0
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.0e-31 139.8 189 49.2
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 4.6e-31 138.7 196 49.5
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 7.8e-31 137.9 225 44.9
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 1.7e-30 136.7 218 46.3
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 3.3e-29 132.5 187 49.7
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.3e-29 132.5 187 49.7
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 5.6e-29 131.7 210 43.8
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 9.5e-29 131.0 223 43.0
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 9.5e-29 131.0 215 43.7
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.8e-28 129.4 211 45.5
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 8.0e-28 127.9 226 42.5
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 8.0e-28 127.9 213 46.5
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 1.8e-27 126.7 225 44.4
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.2e-26 124.0 216 41.7
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.5e-26 123.6 216 41.2
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.0e-26 123.2 183 46.4
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 3.4e-26 122.5 187 44.4
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.4e-26 122.5 216 41.7
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 7.5e-26 121.3 214 42.5
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.3e-25 120.6 226 42.0
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 1.3e-25 120.6 217 44.7
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.7e-25 120.2 188 46.8
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 1.7e-25 120.2 226 40.7
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 2.2e-25 119.8 219 43.4
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 3.7e-25 119.0 201 47.3
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 3.7e-25 119.0 223 40.8
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 4.9e-25 118.6 197 45.2
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 1.9e-24 116.7 227 39.6
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 1.9e-24 116.7 221 41.2
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.9e-24 116.7 217 44.2
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 5.4e-24 115.2 206 42.7
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 5.4e-24 115.2 209 45.0
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 7.0e-24 114.8 193 43.5
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 1.2e-23 114.0 188 42.6
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 1.2e-23 114.0 210 41.4
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 1.2e-23 114.0 217 43.8
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.6e-23 113.6 184 43.5
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 2.7e-23 112.8 209 42.6
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 4.6e-23 112.1 211 42.7
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 7.8e-23 111.3 211 41.2
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 1.0e-22 110.9 212 42.0
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 1.3e-22 110.5 210 42.4
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 1.7e-22 110.2 212 39.6
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 3.0e-22 109.4 212 38.7
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 3.9e-22 109.0 221 38.9
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 3.9e-22 109.0 216 38.0
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 5.1e-22 108.6 191 41.4
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 6.6e-22 108.2 215 40.9
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 6.6e-22 108.2 184 42.4
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 6.6e-22 108.2 217 43.3
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 6.6e-22 108.2 202 42.1
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 8.6e-22 107.8 215 40.9
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 8.6e-22 107.8 213 38.5
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.5e-21 107.1 180 41.7
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 1.5e-21 107.1 235 41.3
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 1.5e-21 107.1 237 38.4
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 3.3e-21 105.9 221 41.6
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 3.3e-21 105.9 213 39.9
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 5.6e-21 105.1 202 42.1
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 5.6e-21 105.1 219 38.8
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 5.6e-21 105.1 241 39.8
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 7.3e-21 104.8 203 40.9
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 7.3e-21 104.8 187 42.2
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.2e-20 104.0 188 42.6
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 1.2e-20 104.0 204 41.2
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 2.8e-20 102.8 194 43.8
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 2.8e-20 102.8 194 43.8
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.6e-20 102.4 184 39.7
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 3.6e-20 102.4 169 47.3
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 4.7e-20 102.1 180 42.2
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 6.2e-20 101.7 135 48.1
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 6.2e-20 101.7 182 43.4
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 8.1e-20 101.3 187 43.9
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 1.1e-19 100.9 224 39.7
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.1e-19 100.9 212 40.6
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.4e-19 100.5 212 42.5
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.4e-19 100.5 187 39.0
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.4e-19 100.5 226 38.9
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.4e-19 100.5 189 40.7
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.8e-19 100.1 180 40.0
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.8e-19 100.1 217 38.7
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.3e-19 99.8 212 39.2
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 2.3e-19 99.8 198 40.4
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 5.2e-19 98.6 224 38.8
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 6.8e-19 98.2 213 38.5
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.2e-18 97.4 180 38.9
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 2.0e-18 96.7 169 45.6
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 3.4e-18 95.9 181 38.1
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 5.8e-18 95.1 209 38.8
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 7.5e-18 94.7 213 38.0
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 9.9e-18 94.4 135 49.6
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 4.9e-17 92.0 213 39.4
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 4.9e-17 92.0 129 45.7
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.1e-16 90.9 190 38.4
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 1.4e-16 90.5 143 42.7
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 1.4e-16 90.5 164 43.9
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 1.9e-16 90.1 202 37.6
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.9e-16 90.1 170 44.1
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 2.4e-16 89.7 192 37.0
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.1e-16 89.0 144 45.1
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 4.1e-16 89.0 137 40.1
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 4.1e-16 89.0 137 39.4
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 9.2e-16 87.8 192 37.5
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 1.2e-15 87.4 222 36.5
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.6e-15 87.0 117 47.0
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 7.8e-15 84.7 107 44.9
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 1.7e-14 83.6 204 38.2
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.7e-14 83.6 186 37.1
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 3.0e-14 82.8 201 36.3
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.9e-14 82.4 117 44.4
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 5.1e-14 82.0 208 37.5
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 8.6e-14 81.3 200 38.0
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 1.9e-13 80.1 74 62.2
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 1.9e-13 80.1 182 35.2
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 2.5e-13 79.7 143 39.9
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 2.5e-13 79.7 143 39.9
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 2.5e-13 79.7 143 39.9
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.3e-13 79.3 132 43.9
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 5.6e-13 78.6 180 34.4
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 7.3e-13 78.2 125 43.2
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 9.6e-13 77.8 170 41.2
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 1.2e-12 77.4 143 39.2
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 1.2e-12 77.4 143 39.2
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 1.2e-12 77.4 188 36.2
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.2e-12 77.4 107 44.9
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 1.6e-12 77.0 123 44.7
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 3.6e-12 75.9 142 42.3
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 3.6e-12 75.9 144 40.3
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 3.6e-12 75.9 107 43.9
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 3.6e-12 75.9 107 43.9
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 3.6e-12 75.9 144 40.3
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 4.7e-12 75.5 144 40.3
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 4.7e-12 75.5 144 42.4
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 6.2e-12 75.1 149 45.0
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 8.1e-12 74.7 184 37.0
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 1.1e-11 74.3 195 32.8
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.4e-11 73.9 223 33.6
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.4e-11 73.9 128 40.6
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.8e-11 73.6 123 41.5
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.8e-11 73.6 123 41.5
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 3.1e-11 72.8 128 38.3
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 1.5e-10 70.5 71 56.3
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 4.4e-10 68.9 213 33.8
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 4.4e-10 68.9 171 34.5
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.7e-09 67.0 158 37.3
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 2.9e-09 66.2 181 33.1
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.9e-09 65.5 48 66.7
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 6.4e-09 65.1 184 29.3
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 1.1e-08 64.3 211 31.3
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.1e-08 64.3 206 33.5
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.4e-08 63.9 57 56.1
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.4e-08 63.9 205 32.7
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 1.9e-08 63.5 176 33.5
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 2.4e-08 63.2 229 31.0
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.2e-08 62.4 107 41.1
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 9.3e-08 61.2 218 29.8
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 1.6e-07 60.5 194 29.4
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.7e-07 59.7 194 28.9
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.5e-07 59.3 194 34.0
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.5e-07 59.3 142 35.2
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 6.0e-07 58.5 45 60.0
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 1.7e-06 57.0 57 50.9
TAR625G0485 Trochodendron aralioides HOM05D007665 ORTHO05D008293 2.3e-06 56.6 46 54.3
Thecc.09G178300 Theobroma cacao HOM05D007665 ORTHO05D008293 3.9e-06 55.8 223 26.5
MBI16_g38083_MAGBIO Magnolia biondii HOM05D007665 ORTHO05D008293 8.7e-06 54.7 47 55.3


User provided reference genes

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