Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 2.0e-167 592.4 314 100.0
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 1.1e-93 347.4 431 53.1
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 4.4e-82 308.9 431 49.7
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 6.4e-65 251.9 425 44.5
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 4.0e-51 206.1 293 49.5
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 9.6e-45 184.9 360 38.6
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.3e-44 184.5 423 39.5
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.4e-43 181.0 422 39.6
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 1.4e-43 181.0 262 49.2
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 9.0e-43 178.3 438 37.0
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.5e-42 177.6 442 40.0
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 1.5e-42 177.6 392 39.8
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 7.6e-42 175.3 403 39.0
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.3e-41 174.5 299 43.5
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 2.2e-41 173.7 282 45.0
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 2.1e-39 167.2 260 44.2
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 5.1e-38 162.5 261 47.1
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 2.5e-37 160.2 278 40.6
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 4.3e-37 159.5 301 40.9
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 2.8e-36 156.8 452 34.1
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 6.3e-36 155.6 227 47.6
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 6.3e-36 155.6 240 45.8
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 2.4e-35 153.7 390 37.2
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 5.0e-33 146.0 418 39.0
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 6.5e-33 145.6 269 44.2
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 8.5e-33 145.2 379 36.9
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 1.1e-32 144.8 414 33.8
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 1.4e-32 144.4 280 42.1
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.4e-32 144.4 166 53.6
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 3.2e-32 143.3 397 38.0
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 1.3e-30 137.9 423 32.6
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.3e-30 137.9 268 41.8
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.3e-30 137.9 404 33.7
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 3.0e-30 136.7 405 35.1
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 3.0e-30 136.7 297 36.7
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 3.0e-30 136.7 377 33.4
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 5.1e-30 136.0 272 40.4
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 6.7e-30 135.6 285 40.0
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 5.7e-29 132.5 346 36.7
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 1.6e-28 131.0 420 34.0
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.8e-28 130.2 406 33.5
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.1e-27 128.3 286 38.8
Lsat_1_v5_gn_7_103061 Lactuca sativa HOM05D006105 ORTHO05D006345 1.1e-27 128.3 360 35.3
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 1.1e-27 128.3 212 42.9
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 1.1e-27 128.3 353 35.1
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 4.1e-27 126.3 335 35.2
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 9.0e-27 125.2 404 33.7
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 1.2e-26 124.8 434 31.6
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.5e-26 124.4 288 37.2
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 1.5e-26 124.4 435 34.7
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 2.6e-26 123.6 284 37.3
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 2.6e-26 123.6 114 62.3
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 5.9e-26 122.5 436 30.5
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 5.9e-26 122.5 354 34.7
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 1.0e-25 121.7 231 41.1
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 1.3e-25 121.3 435 30.6
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 3.8e-25 119.8 417 31.9
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 5.0e-25 119.4 449 30.1
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 5.0e-25 119.4 424 33.5
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 6.5e-25 119.0 283 42.0
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.4e-24 117.9 289 36.7
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 3.2e-24 116.7 349 35.5
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 5.5e-24 115.9 453 29.4
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 9.4e-24 115.2 371 31.8
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 9.4e-24 115.2 265 37.4
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.6e-23 114.4 404 33.4
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 6.1e-23 112.5 282 36.2
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.4e-22 111.3 454 28.4
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 2.3e-22 110.5 241 39.8
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 8.8e-22 108.6 351 32.8
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 1.5e-21 107.8 214 43.0
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 1.5e-21 107.8 364 33.2
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 2.0e-21 107.5 225 37.8
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 4.3e-21 106.3 438 30.8
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 7.4e-21 105.5 249 37.8
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 9.7e-21 105.1 439 32.3
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 4.8e-20 102.8 406 31.5
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 4.8e-20 102.8 203 37.9
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 6.3e-20 102.4 409 29.6
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 1.4e-19 101.3 434 29.7
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 2.4e-19 100.5 425 33.2
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 2.0e-18 97.4 400 31.0
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 2.6e-18 97.1 346 32.7
CANSAT35G1552 Cannabis sativa HOM05D006105 ORTHO05D006345 3.4e-18 96.7 369 30.4
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 5.9e-18 95.9 245 39.2
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 1.7e-17 94.4 379 30.3
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.7e-17 94.4 334 30.8
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 2.9e-17 93.6 399 29.8
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 8.5e-17 92.0 380 30.5
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.1e-16 91.7 259 33.2
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 1.4e-16 91.3 351 32.2
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 1.4e-16 91.3 396 28.8
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 2.5e-16 90.5 401 30.7
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 4.2e-16 89.7 361 29.9
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.2e-15 88.2 361 29.6
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 2.1e-15 87.4 277 33.2
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 4.7e-15 86.3 265 37.0
HanXRQChr17g0545011 Helianthus annuus HOM05D006105 ORTHO05D006345 7.9e-15 85.5 168 43.5
Sopen10g003350 Solanum pennellii HOM05D016660 ORTHO05D006345 3.9e-14 83.2 203 36.9
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.1e-13 81.6 446 30.0
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 1.1e-13 81.6 264 32.6
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 1.1e-13 81.6 258 36.0
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 4.4e-13 79.7 246 37.0
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 9.7e-13 78.6 254 35.8
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 9.7e-13 78.6 363 28.7
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 1.3e-12 78.2 269 34.2
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 1.7e-12 77.8 265 34.7
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 2.2e-12 77.4 446 29.1
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 1.4e-11 74.7 256 35.9
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 2.4e-11 73.9 322 29.5
Oeu051102.1 Olea europaea HOM05D006105 ORTHO05D006345 2.4e-11 73.9 106 46.2
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 3.1e-11 73.6 280 30.4
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 3.1e-11 73.6 422 28.9
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 3.1e-11 73.6 240 31.2
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 1.6e-10 71.2 264 32.2
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 3.5e-10 70.1 441 29.7
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 4.5e-10 69.7 263 33.5
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 1.7e-09 67.8 368 27.7
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 3.2e-08 63.5 221 30.3
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 3.2e-08 63.5 167 34.1
Solyc10g007156.2 Solanum lycopersicum HOM05D016660 ORTHO05D006345 9.4e-08 62.0 180 33.3
ATR0602G093 Amborella trichopoda HOM05D006105 ORTHO05D006345 1.2e-07 61.6 201 28.9
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 3.6e-07 60.1 278 31.3
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 4.7e-07 59.7 308 28.9
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 1.0e-06 58.5 237 27.4
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 4.0e-06 56.6 61 59.0
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 6.7e-06 55.8 357 27.2


User provided reference genes

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