Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0372571 Helianthus annuus HOM05D001673 ORTHO05D029933 6.3e-31 136.7 66 100.0
HanXRQChr10g0300921 Helianthus annuus HOM05D001673 ORTHO05D002312 2.3e-20 101.7 65 76.9
ECA234G2208 Erigeron canadensis HOM05D001673 ORTHO05D002312 8.6e-20 99.8 65 75.4
HanXRQChr04g0112351 Helianthus annuus HOM05D001673 ORTHO05D002312 1.1e-19 99.4 65 75.4
Phvul.011G035200 Phaseolus vulgaris HOM05D001673 ORTHO05D002312 9.5e-19 96.3 64 71.9
VMungo1127G1414 Vigna mungo HOM05D001673 ORTHO05D002312 9.5e-19 96.3 64 71.9
arahy.Tifrunner.gnm1.ann1.5SR8FF Arachis hypogaea HOM05D001673 ORTHO05D002312 2.1e-18 95.1 64 71.9
arahy.Tifrunner.gnm1.ann1.VNV0G0 Arachis hypogaea HOM05D001673 ORTHO05D002312 2.1e-18 95.1 64 71.9
CSS0010551 Camellia sinensis var. sinensis HOM05D001673 ORTHO05D002312 2.1e-18 95.1 64 71.9
CSS0031397 Camellia sinensis var. sinensis HOM05D001673 ORTHO05D002312 2.1e-18 95.1 64 71.9
Ciclev10027670m.g Citrus clementina HOM05D001673 ORTHO05D002312 2.1e-18 95.1 64 71.9
CsaV3_2G016050 Cucumis sativus L. HOM05D001673 ORTHO05D002312 2.1e-18 95.1 64 71.9
Dinv41946 Davidia involucrata HOM05D001673 ORTHO05D002312 2.1e-18 95.1 64 71.9
Lj3g0017227 Lotus japonicus HOM05D001673 ORTHO05D002312 2.1e-18 95.1 64 71.9
Potri.004G174700 Populus trichocarpa HOM05D001673 ORTHO05D002312 2.1e-18 95.1 64 71.9
Potri.009G134300 Populus trichocarpa HOM05D001673 ORTHO05D002312 2.1e-18 95.1 64 71.9
Prupe.8G164700 Prunus persica HOM05D001673 ORTHO05D002312 2.1e-18 95.1 64 71.9
Sabra04G0116500 Salix brachista HOM05D001673 ORTHO05D002312 2.1e-18 95.1 64 71.9
Sabra09G0104000 Salix brachista HOM05D001673 ORTHO05D002312 2.1e-18 95.1 64 71.9
GSVIVG01024033001 Vitis vinifera HOM05D001673 ORTHO05D002312 2.1e-18 95.1 64 71.9
Actinidia23588 Actinidia chinensis HOM05D001673 ORTHO05D002312 2.8e-18 94.7 64 71.9
BcaC01g00239 Brassica carinata HOM05D001673 ORTHO05D002312 2.8e-18 94.7 64 68.8
A08p24140 Brassica napus HOM05D001673 ORTHO05D002312 2.8e-18 94.7 64 68.8
C03p77170 Brassica napus HOM05D001673 ORTHO05D002312 2.8e-18 94.7 64 68.8
BolC3t19969H Brassica oleracea HOM05D001673 ORTHO05D002312 2.8e-18 94.7 64 68.8
BraA08t34369Z Brassica rapa HOM05D001673 ORTHO05D002312 2.8e-18 94.7 64 68.8
FvH4_2g01290 Fragaria vesca HOM05D001673 ORTHO05D002312 2.8e-18 94.7 64 71.9
FAN15G1966 Fragaria x ananassa HOM05D001673 ORTHO05D002312 2.8e-18 94.7 64 71.9
FAN20G1059 Fragaria x ananassa HOM05D001673 ORTHO05D002312 2.8e-18 94.7 64 71.9
FAN24G0828 Fragaria x ananassa HOM05D001673 ORTHO05D002312 2.8e-18 94.7 64 71.9
FAN27G1306 Fragaria x ananassa HOM05D001673 ORTHO05D002312 2.8e-18 94.7 64 71.9
PSO541G1030 Papaver somniferum HOM05D001673 ORTHO05D002312 3.6e-18 94.4 64 70.3
PSO675G1883 Papaver somniferum HOM05D001673 ORTHO05D002312 3.6e-18 94.4 64 70.3
RcHm_v2.0_Chr6g0252001 Rosa chinensis HOM05D001673 ORTHO05D002312 3.6e-18 94.4 64 71.9
Atru.chr5.3308 Acer truncatum HOM05D001673 ORTHO05D002312 4.7e-18 94.0 64 70.3
Cfa005234 Carpinus fangiana HOM05D001673 ORTHO05D002312 4.7e-18 94.0 64 70.3
CiPaw.06G122700 Carya illinoinensis HOM05D001673 ORTHO05D002312 4.7e-18 94.0 64 70.3
Haze_02149 Corylus avellana HOM05D001673 ORTHO05D002312 4.7e-18 94.0 64 70.3
Eucgr.I01410 Eucalyptus grandis HOM05D001673 ORTHO05D002312 4.7e-18 94.0 64 70.3
Glyma.11G107500 Glycine max HOM05D001673 ORTHO05D002312 4.7e-18 94.0 64 70.3
Glyma.12G032500 Glycine max HOM05D001673 ORTHO05D002312 4.7e-18 94.0 64 70.3
HanXRQChr09g0246691 Helianthus annuus HOM05D001673 ORTHO05D029933 4.7e-18 94.0 47 95.7
Lj1g0027642 Lotus japonicus HOM05D001673 ORTHO05D002312 4.7e-18 94.0 64 70.3
Lalb_Chr19g0139141 Lupinus albus HOM05D001673 ORTHO05D002312 4.7e-18 94.0 64 70.3
Nn6g31999 Nelumbo nucifera HOM05D001673 ORTHO05D002312 4.7e-18 94.0 64 70.3
QL11p050142 Quercus lobata HOM05D001673 ORTHO05D002312 4.7e-18 94.0 64 70.3
TWI31G1474 Tripterygium wilfordii HOM05D001673 ORTHO05D002312 4.7e-18 94.0 64 70.3
CiPaw.05G081300 Carya illinoinensis HOM05D001673 ORTHO05D002312 6.1e-18 93.6 64 68.8
CDE05G2005 Ceratophyllum demersum HOM05D001673 ORTHO05D002312 6.1e-18 93.6 64 70.3
Glyma.06G003600 Glycine max HOM05D001673 ORTHO05D002312 6.1e-18 93.6 64 70.3
Lalb_Chr01g0001851 Lupinus albus HOM05D001673 ORTHO05D002312 6.1e-18 93.6 64 70.3
Manes.04G074400 Manihot esculenta HOM05D001673 ORTHO05D002312 6.1e-18 93.6 64 70.3
Sed0008816 Sechium edule HOM05D001673 ORTHO05D002312 6.1e-18 93.6 64 70.3
Aa31LG6G16560 Aethionema arabicum HOM05D001673 ORTHO05D002312 8.0e-18 93.2 64 67.2
ClCG02G011880 Citrullus lanatus HOM05D001673 ORTHO05D002312 8.0e-18 93.2 64 70.3
Lsat_1_v5_gn_8_124281 Lactuca sativa HOM05D001673 ORTHO05D002312 8.0e-18 93.2 64 70.3
Lj9C393T4 Lonicera japonica HOM05D001673 ORTHO05D002312 8.0e-18 93.2 64 70.3
Nitab4.5_0001889g0100 Nicotiana tabacum HOM05D001673 ORTHO05D002312 8.0e-18 93.2 64 68.8
Sp7g37170 Schrenkiella parvula HOM05D001673 ORTHO05D002312 8.0e-18 93.2 64 67.2
Solyc10g055450.2 Solanum lycopersicum HOM05D001673 ORTHO05D002312 8.0e-18 93.2 64 68.8
Sopen10g025230 Solanum pennellii HOM05D001673 ORTHO05D002312 8.0e-18 93.2 64 68.8
PGSC0003DMG401011946 Solanum tuberosum HOM05D001673 ORTHO05D002312 8.0e-18 93.2 64 68.8
Cpa.g.sc37.145 Carica papaya HOM05D001673 ORTHO05D002312 1.0e-17 92.8 64 68.8
Duzib132G0795 Durio zibethinus HOM05D001673 ORTHO05D002312 1.0e-17 92.8 64 68.8
Duzib248G0095 Durio zibethinus HOM05D001673 ORTHO05D002312 1.0e-17 92.8 64 68.8
Lj5C179T14 Lonicera japonica HOM05D001673 ORTHO05D002312 1.0e-17 92.8 64 70.3
MBI09_g17622_MAGBIO Magnolia biondii HOM05D001673 ORTHO05D002312 1.0e-17 92.8 64 68.8
MD00G1173700 Malus domestica HOM05D001673 ORTHO05D002312 1.0e-17 92.8 64 70.3
MD05G1120900 Malus domestica HOM05D001673 ORTHO05D002312 1.0e-17 92.8 64 70.3
Nitab4.5_0007267g0030 Nicotiana tabacum HOM05D001673 ORTHO05D002312 1.0e-17 92.8 64 68.8
PGR142G4388 Punica granatum HOM05D001673 ORTHO05D002312 1.0e-17 92.8 64 68.8
Thecc.02G061100 Theobroma cacao HOM05D001673 ORTHO05D002312 1.0e-17 92.8 64 68.8
Gorai.002G196900 Gossypium raimondii HOM05D001673 ORTHO05D002312 1.4e-17 92.4 64 68.8
Medtr4g073370 Medicago truncatula HOM05D001673 ORTHO05D002312 1.4e-17 92.4 64 70.3
Rhsim05G0060600 Rhododendron simsii HOM05D001673 ORTHO05D002312 1.4e-17 92.4 64 70.3
SEGI_13493 Sequoiadendron giganteum HOM05D001673 ORTHO05D013418 1.4e-17 92.4 64 68.8
vmacro17354 Vaccinium macrocarpon HOM05D001673 ORTHO05D002312 1.4e-17 92.4 64 70.3
MSTRG.27643 Avicennia marina HOM05D001673 ORTHO05D002312 1.8e-17 92.0 64 68.8
CARHR294330 Cardamine hirsuta HOM05D001673 ORTHO05D002312 1.8e-17 92.0 64 65.6
Cc02_g16240 Coffea canephora HOM05D001673 ORTHO05D002312 1.8e-17 92.0 64 68.8
Dinv14100 Davidia involucrata HOM05D001673 ORTHO05D002312 1.8e-17 92.0 64 70.3
Glyma.04G004000 Glycine max HOM05D001673 ORTHO05D002312 1.8e-17 92.0 64 68.8
MBI05_g23386_MAGBIO Magnolia biondii HOM05D001673 ORTHO05D002312 1.8e-17 92.0 64 68.8
Nitab4.5_0011722g0010 Nicotiana tabacum HOM05D001673 ORTHO05D002312 1.8e-17 92.0 64 68.8
Phvul.009G119700 Phaseolus vulgaris HOM05D001673 ORTHO05D002312 1.8e-17 92.0 64 68.8
RcHm_v2.0_Chr6g0251951 Rosa chinensis HOM05D001673 ORTHO05D002312 1.8e-17 92.0 64 70.3
Sed0004775 Sechium edule HOM05D001673 ORTHO05D002312 1.8e-17 92.0 64 68.8
VMungo1309G2569 Vigna mungo HOM05D001673 ORTHO05D002312 1.8e-17 92.0 64 68.8
CANSAT25G3273 Cannabis sativa HOM05D001673 ORTHO05D002312 2.3e-17 91.7 64 68.8
Oeu034968.3 Olea europaea HOM05D001673 ORTHO05D002312 2.3e-17 91.7 64 67.2
Peaxi162Scf00042g02521 Petunia axillaris HOM05D001673 ORTHO05D002312 2.3e-17 91.7 64 68.8
SalBow3G3185 Salvia bowleyana HOM05D001673 ORTHO05D002312 2.3e-17 91.7 64 68.8
THA.LOC104807813 Tarenaya hassleriana HOM05D001673 ORTHO05D002312 2.3e-17 91.7 64 67.2
AL7G10500 Arabidopsis lyrata HOM05D001673 ORTHO05D002312 3.0e-17 91.3 64 67.2
CAN.G588.70 Capsicum annuum HOM05D001673 ORTHO05D002312 3.0e-17 91.3 64 67.2
Peaxi162Scf00362g00725 Petunia axillaris HOM05D001673 ORTHO05D002312 3.0e-17 91.3 64 67.2
Solyc01g111530.3 Solanum lycopersicum HOM05D001673 ORTHO05D002312 3.0e-17 91.3 64 67.2
Sopen01g053570 Solanum pennellii HOM05D001673 ORTHO05D002312 3.0e-17 91.3 64 67.2
TPR.G39221 Trifolium pratense HOM05D001673 ORTHO05D002312 3.0e-17 91.3 64 68.8
Ca_19064_v3 Cicer arietinum L. HOM05D001673 ORTHO05D002312 4.0e-17 90.9 64 68.8
Lalb_Chr03g0025151 Lupinus albus HOM05D001673 ORTHO05D002312 4.0e-17 90.9 64 68.8
Nn5g30770 Nelumbo nucifera HOM05D001673 ORTHO05D002312 4.0e-17 90.9 64 67.2
Oeu006641.2 Olea europaea HOM05D001673 ORTHO05D002312 4.0e-17 90.9 64 67.2
Psat7g176160 Pisum sativum HOM05D001673 ORTHO05D002312 4.0e-17 90.9 64 68.8
Hund06431 Selenicereus undatus HOM05D001673 ORTHO05D002312 4.0e-17 90.9 64 68.8
Sc14g0002230 Simmondsia chinensis HOM05D001673 ORTHO05D002312 4.0e-17 90.9 64 67.2
TAR625G0357 Trochodendron aralioides HOM05D001673 ORTHO05D002312 4.0e-17 90.9 64 67.2
Gorai.008G035900 Gossypium raimondii HOM05D001673 ORTHO05D002312 5.2e-17 90.5 64 67.2
AT4G38600 Arabidopsis thaliana HOM05D001673 ORTHO05D002312 6.8e-17 90.1 64 65.6
MSTRG.5450 Avicennia marina HOM05D001673 ORTHO05D002312 6.8e-17 90.1 64 67.2
Carub.0007s0047 Capsella rubella HOM05D001673 ORTHO05D002312 6.8e-17 90.1 64 65.6
COL.COLO4_17325 Corchorus olitorius HOM05D001673 ORTHO05D002312 6.8e-17 90.1 64 68.8
Thhalv10024192m.g Eutrema salsugineum HOM05D001673 ORTHO05D002312 6.8e-17 90.1 64 65.6
Nitab4.5_0001891g0010 Nicotiana tabacum HOM05D001673 ORTHO05D002312 6.8e-17 90.1 64 67.2
Ah.01g008480 Amaranthus hybridus HOM05D001673 ORTHO05D002312 1.2e-16 89.4 64 67.2
BcaNung01974 Brassica carinata HOM05D001673 ORTHO05D002312 1.5e-16 89.0 64 64.1
Gohir.D12G034800 Gossypium hirsutum HOM05D001673 ORTHO05D002312 1.5e-16 89.0 64 65.6
TAR628G1079 Trochodendron aralioides HOM05D001673 ORTHO05D002312 1.5e-16 89.0 64 67.2
Aqoxy6G02183 Aquilegia oxysepala HOM05D001673 ORTHO05D002312 2.0e-16 88.6 64 67.2
TAR381G1293 Trochodendron aralioides HOM05D001673 ORTHO05D002312 2.0e-16 88.6 65 67.7
Ah.01g022910 Amaranthus hybridus HOM05D001673 ORTHO05D002312 2.6e-16 88.2 64 67.2
Migut.N01316 Erythranthe guttata HOM05D001673 ORTHO05D002312 2.6e-16 88.2 64 64.1
Oeu035588.1 Olea europaea HOM05D001673 ORTHO05D002312 2.6e-16 88.2 64 64.1
AUR62010051 Chenopodium quinoa HOM05D001673 ORTHO05D002312 3.4e-16 87.8 64 67.2
AUR62013042 Chenopodium quinoa HOM05D001673 ORTHO05D002312 3.4e-16 87.8 64 67.2
Sc08g0002990 Simmondsia chinensis HOM05D001673 ORTHO05D002312 3.4e-16 87.8 64 67.2
SGA_v2.0_scaffold80G25844 Striga asiatica HOM05D001673 ORTHO05D002312 3.4e-16 87.8 64 67.2
DCAR_003166 Daucus carota HOM05D001673 ORTHO05D002312 5.7e-16 87.0 64 62.5
ECA233G4585 Erigeron canadensis HOM05D001673 ORTHO05D002312 5.7e-16 87.0 64 67.2
Gohir.A01G002700 Gossypium hirsutum HOM05D001673 ORTHO05D002312 7.5e-16 86.7 64 64.1
Psat7g017880 Pisum sativum HOM05D001673 ORTHO05D029933 7.5e-16 86.7 64 64.1
EL10Ac9g21391 Beta vulgaris HOM05D001673 ORTHO05D002312 9.8e-16 86.3 64 65.6
Gorai.002G003200 Gossypium raimondii HOM05D001673 ORTHO05D002312 9.8e-16 86.3 64 62.5
unitig_52.g17374 Utricularia gibba HOM05D001673 ORTHO05D002312 9.8e-16 86.3 64 64.1
TAR376G0624 Trochodendron aralioides HOM05D001673 ORTHO05D002312 1.3e-15 85.9 64 64.1
Zm00001eb086710 Zea mays HOM05D001673 ORTHO05D002312 2.2e-15 85.1 64 62.5
unitig_0.g2351 Utricularia gibba HOM05D001673 ORTHO05D002312 3.7e-15 84.3 64 62.5
ATR0304G007 Amborella trichopoda HOM05D001673 ORTHO05D002312 6.3e-15 83.6 64 62.5
Dinv40117 Davidia involucrata HOM05D001673 ORTHO05D002312 1.1e-14 82.8 64 60.9
Zm00001eb229270 Zea mays HOM05D001673 ORTHO05D002312 1.1e-14 82.8 64 60.9
GSVIVG01018731001 Vitis vinifera HOM05D001673 ORTHO05D002312 2.4e-14 81.6 65 58.5
SEGI_16712 Sequoiadendron giganteum HOM05D001673 ORTHO05D002312 4.1e-14 80.9 64 57.8
AagrBONN_evm.TU.Sc2ySwM_368.2663 Anthoceros agrestis HOM05D001673 ORTHO05D002312 9.2e-14 79.7 64 56.2
CBR_g4741 Chara braunii HOM05D001673 ORTHO05D002312 2.0e-13 78.6 64 54.7
SGA_v2.0_scaffold58G20376 Striga asiatica HOM05D001673 ORTHO05D002312 4.5e-13 77.4 64 57.8
DCAR_022772 Daucus carota HOM05D001673 ORTHO05D002312 1.0e-12 76.3 64 56.2
DCAR_022773 Daucus carota HOM05D001673 ORTHO05D002312 1.0e-12 76.3 64 56.2
Mapoly0061s0046 Marchantia polymorpha HOM05D001673 ORTHO05D002312 2.9e-12 74.7 64 53.1
Zm00001eb210110 Zea mays HOM05D001673 ORTHO05D020227 1.1e-11 72.8 66 54.5
MELO3C020814.2 Cucumis melo HOM05D001673 ORTHO05D002312 1.6e-10 68.9 121 38.0
Lsat_1_v5_gn_4_71560 Lactuca sativa HOM05D001673 ORTHO05D002312 2.8e-10 68.2 65 55.4
SMO118G0088 Selaginella moellendorffii HOM05D001673 ORTHO05D002312 4.7e-10 67.4 64 48.4
CAN.G124.13 Capsicum annuum HOM05D001673 ORTHO05D013418 1.5e-08 62.4 53 56.6
Aa31LG1G22040 Aethionema arabicum HOM05D001673 ORTHO05D002312 4.4e-08 60.8 64 42.2
CARHR210440 Cardamine hirsuta HOM05D001673 ORTHO05D002312 7.5e-08 60.1 64 42.2
Ca_15305_v3 Cicer arietinum L. HOM05D001673 ORTHO05D002312 7.5e-08 60.1 142 30.3
BcaC03g13042 Brassica carinata HOM05D001673 ORTHO05D002312 6.4e-07 57.0 64 40.6
C02p00700 Brassica napus HOM05D001673 ORTHO05D002312 6.4e-07 57.0 64 40.6
BolC2t06068H Brassica oleracea HOM05D001673 ORTHO05D002312 6.4e-07 57.0 64 40.6
BcaB05g21863 Brassica carinata HOM05D001673 ORTHO05D002312 8.3e-07 56.6 64 40.6
PSO384G1651 Papaver somniferum HOM05D001673 ORTHO05D002312 1.1e-06 56.2 65 43.1
PSO339G6320 Papaver somniferum HOM05D001673 ORTHO05D002312 1.4e-06 55.8 65 41.5
Ciclev10010897m.g Citrus clementina HOM05D001673 ORTHO05D002312 1.9e-06 55.5 64 37.5
MBI14_g15956_MAGBIO Magnolia biondii HOM05D001673 ORTHO05D002312 1.9e-06 55.5 64 40.6
AL6G12160 Arabidopsis lyrata HOM05D001673 ORTHO05D002312 3.2e-06 54.7 64 39.1
BraA02t04733Z Brassica rapa HOM05D001673 ORTHO05D002312 3.2e-06 54.7 64 39.1
Carub.0006s0169 Capsella rubella HOM05D001673 ORTHO05D002312 3.2e-06 54.7 64 37.5
Psat0s2358g0200 Pisum sativum HOM05D001673 ORTHO05D013418 3.2e-06 54.7 42 66.7
arahy.Tifrunner.gnm1.ann1.B53YPK Arachis hypogaea HOM05D001673 ORTHO05D002312 4.1e-06 54.3 65 38.5
arahy.Tifrunner.gnm1.ann1.NVTB4G Arachis hypogaea HOM05D001673 ORTHO05D002312 4.1e-06 54.3 65 38.5
A03p00950 Brassica napus HOM05D001673 ORTHO05D002312 4.1e-06 54.3 64 37.5
DCAR_017728 Daucus carota HOM05D001673 ORTHO05D002312 4.1e-06 54.3 64 39.1
Thhalv10012430m.g Eutrema salsugineum HOM05D001673 ORTHO05D002312 4.1e-06 54.3 64 39.1
Dinv37248 Davidia involucrata HOM05D001673 ORTHO05D002312 5.4e-06 53.9 64 39.1
RcHm_v2.0_Chr3g0458101 Rosa chinensis HOM05D001673 ORTHO05D029933 7.0e-06 53.5 46 60.9
TAR623G1582 Trochodendron aralioides HOM05D001673 ORTHO05D002312 7.0e-06 53.5 64 37.5
HPP92_015010 Vanilla planifolia HOM05D001673 ORTHO05D002312 9.2e-06 53.1 34 76.5


User provided reference genes

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