Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0370141 Helianthus annuus HOM05D002128 ORTHO05D012943 1.9e-43 178.7 88 100.0
Lsat_1_v5_gn_3_106121 Lactuca sativa HOM05D002128 ORTHO05D002497 1.1e-09 66.6 37 86.5
HanXRQChr17g0550631 Helianthus annuus HOM05D002128 ORTHO05D002497 1.4e-09 66.2 37 89.2
ECA246G5067 Erigeron canadensis HOM05D002128 ORTHO05D002497 1.8e-09 65.9 37 86.5
HanXRQChr15g0480301 Helianthus annuus HOM05D002128 ORTHO05D002497 5.3e-09 64.3 37 86.5
ClCG07G005530 Citrullus lanatus HOM05D002128 ORTHO05D002497 6.9e-09 63.9 38 76.3
COL.COLO4_16603 Corchorus olitorius HOM05D002128 ORTHO05D002497 9.1e-09 63.5 40 75.0
CANSAT01G1594 Cannabis sativa HOM05D002128 ORTHO05D002497 2.0e-08 62.4 40 75.0
Duzib268G0842 Durio zibethinus HOM05D002128 ORTHO05D002497 2.0e-08 62.4 40 75.0
Gohir.A01G146436 Gossypium hirsutum HOM05D002128 ORTHO05D002497 2.0e-08 62.4 40 75.0
Gohir.A12G152400 Gossypium hirsutum HOM05D002128 ORTHO05D002497 2.0e-08 62.4 40 77.5
Gohir.D01G139200 Gossypium hirsutum HOM05D002128 ORTHO05D002497 2.0e-08 62.4 40 75.0
Gorai.002G166800 Gossypium raimondii HOM05D002128 ORTHO05D002497 2.0e-08 62.4 40 75.0
Manes.15G134900 Manihot esculenta HOM05D002128 ORTHO05D002497 2.0e-08 62.4 40 75.0
Thecc.02G293500 Theobroma cacao HOM05D002128 ORTHO05D002497 2.0e-08 62.4 40 75.0
Gohir.D12G155900 Gossypium hirsutum HOM05D002128 ORTHO05D002497 2.6e-08 62.0 40 77.5
Gorai.008G168500 Gossypium raimondii HOM05D002128 ORTHO05D002497 2.6e-08 62.0 40 77.5
Haze_10872 Corylus avellana HOM05D002128 ORTHO05D002497 3.4e-08 61.6 47 66.0
Lj6A737G47 Lonicera japonica HOM05D002128 ORTHO05D002497 3.4e-08 61.6 42 73.8
Eucgr.G02098 Eucalyptus grandis HOM05D002128 ORTHO05D002497 4.5e-08 61.2 37 78.4
Nitab4.5_0000640g0150 Nicotiana tabacum HOM05D002128 ORTHO05D012943 4.5e-08 61.2 41 70.7
VMungo0251G1878 Vigna mungo HOM05D002128 ORTHO05D002497 5.9e-08 60.8 40 75.0
Glyma.05G239400 Glycine max HOM05D002128 ORTHO05D002497 7.7e-08 60.5 40 72.5
Glyma.08G046500 Glycine max HOM05D002128 ORTHO05D002497 7.7e-08 60.5 40 72.5
Lj4g0027300 Lotus japonicus HOM05D002128 ORTHO05D002497 7.7e-08 60.5 40 70.0
Phvul.002G321800 Phaseolus vulgaris HOM05D002128 ORTHO05D002497 7.7e-08 60.5 40 72.5
PGR142G0602 Punica granatum HOM05D002128 ORTHO05D002497 7.7e-08 60.5 40 72.5
THA.LOC104821904 Tarenaya hassleriana HOM05D002128 ORTHO05D002497 7.7e-08 60.5 36 77.8
Cfa015028 Carpinus fangiana HOM05D002128 ORTHO05D002497 1.0e-07 60.1 37 75.7
Sabra08G0103200 Salix brachista HOM05D002128 ORTHO05D002497 1.0e-07 60.1 41 68.3
Sed0017825 Sechium edule HOM05D002128 ORTHO05D002497 1.0e-07 60.1 37 78.4
MELO3C016660.2 Cucumis melo HOM05D002128 ORTHO05D002497 1.3e-07 59.7 37 75.7
CsaV3_5G014370 Cucumis sativus L. HOM05D002128 ORTHO05D002497 1.3e-07 59.7 37 75.7
AL3G43720 Arabidopsis lyrata HOM05D002128 ORTHO05D012943 1.7e-07 59.3 47 59.6
Ciclev10014570m.g Citrus clementina HOM05D002128 ORTHO05D002497 1.7e-07 59.3 40 70.0
DCAR_026805 Daucus carota HOM05D002128 ORTHO05D002497 1.7e-07 59.3 37 75.7
Hund25277 Selenicereus undatus HOM05D002128 ORTHO05D002497 1.7e-07 59.3 44 65.9
Hund26335 Selenicereus undatus HOM05D002128 ORTHO05D002497 1.7e-07 59.3 38 68.4
Sopen01g001320 Solanum pennellii HOM05D002128 ORTHO05D002497 1.7e-07 59.3 40 72.5
TWI53G1399 Tripterygium wilfordii HOM05D002128 ORTHO05D002497 1.7e-07 59.3 37 78.4
TWI74G0110 Tripterygium wilfordii HOM05D002128 ORTHO05D002497 1.7e-07 59.3 37 78.4
arahy.Tifrunner.gnm1.ann1.2Q8XNQ Arachis hypogaea HOM05D002128 ORTHO05D002497 2.2e-07 58.9 41 65.9
arahy.Tifrunner.gnm1.ann1.8C30VS Arachis hypogaea HOM05D002128 ORTHO05D002497 2.2e-07 58.9 62 50.0
arahy.Tifrunner.gnm1.ann1.SPD1GG Arachis hypogaea HOM05D002128 ORTHO05D002497 2.2e-07 58.9 37 73.0
Dinv07720 Davidia involucrata HOM05D002128 ORTHO05D002497 2.2e-07 58.9 37 75.7
Oeu044004.1 Olea europaea HOM05D002128 ORTHO05D002497 2.2e-07 58.9 37 78.4
Oeu044005.1 Olea europaea HOM05D002128 ORTHO05D002497 2.2e-07 58.9 37 78.4
Sc11g0001620 Simmondsia chinensis HOM05D002128 ORTHO05D002497 2.2e-07 58.9 38 71.1
Actinidia36621 Actinidia chinensis HOM05D002128 ORTHO05D002497 2.9e-07 58.5 37 73.0
AL1G38160 Arabidopsis lyrata HOM05D002128 ORTHO05D012943 2.9e-07 58.5 47 59.6
AL3G51790 Arabidopsis lyrata HOM05D002128 ORTHO05D012943 2.9e-07 58.5 47 59.6
SalBow2G1004 Salvia bowleyana HOM05D002128 ORTHO05D002497 2.9e-07 58.5 37 78.4
Actinidia12398 Actinidia chinensis HOM05D002128 ORTHO05D002497 3.8e-07 58.2 36 75.0
BcaC06g36500 Brassica carinata HOM05D002128 ORTHO05D012943 3.8e-07 58.2 47 63.8
CSS0039115 Camellia sinensis var. sinensis HOM05D002128 ORTHO05D002497 3.8e-07 58.2 36 75.0
CSS0041619 Camellia sinensis var. sinensis HOM05D002128 ORTHO05D002497 3.8e-07 58.2 36 75.0
FvH4_4g33490 Fragaria vesca HOM05D002128 ORTHO05D002497 3.8e-07 58.2 47 66.0
FAN07G1608 Fragaria x ananassa HOM05D002128 ORTHO05D002497 3.8e-07 58.2 47 66.0
FAN12G1509 Fragaria x ananassa HOM05D002128 ORTHO05D002497 3.8e-07 58.2 47 66.0
FAN17G1944 Fragaria x ananassa HOM05D002128 ORTHO05D002497 3.8e-07 58.2 47 66.0
FAN22G2331 Fragaria x ananassa HOM05D002128 ORTHO05D002497 3.8e-07 58.2 47 66.0
Hund09036 Selenicereus undatus HOM05D002128 ORTHO05D002497 3.8e-07 58.2 37 70.3
PGSC0003DMG400019971 Solanum tuberosum HOM05D002128 ORTHO05D002497 3.8e-07 58.2 41 68.3
SGA_v2.0_scaffold23G10190 Striga asiatica HOM05D002128 ORTHO05D002497 3.8e-07 58.2 37 73.0
arahy.Tifrunner.gnm1.ann1.U9EWE2 Arachis hypogaea HOM05D002128 ORTHO05D002497 5.0e-07 57.8 37 73.0
COL.COLO4_07407 Corchorus olitorius HOM05D002128 ORTHO05D012943 5.0e-07 57.8 47 57.4
Rhsim09G0089100 Rhododendron simsii HOM05D002128 ORTHO05D002497 5.0e-07 57.8 37 70.3
CiPaw.06G052600 Carya illinoinensis HOM05D002128 ORTHO05D002497 6.5e-07 57.4 37 78.4
Medtr8g105590 Medicago truncatula HOM05D002128 ORTHO05D002497 6.5e-07 57.4 40 70.0
Nitab4.5_0000055g0160 Nicotiana tabacum HOM05D002128 ORTHO05D002497 6.5e-07 57.4 47 59.6
Psat7g007600 Pisum sativum HOM05D002128 ORTHO05D002497 6.5e-07 57.4 40 70.0
Atru.chr11.911 Acer truncatum HOM05D002128 ORTHO05D002497 8.5e-07 57.0 40 72.5
Aa31LG5G16900 Aethionema arabicum HOM05D002128 ORTHO05D002497 8.5e-07 57.0 36 72.2
AT1G68050 Arabidopsis thaliana HOM05D002128 ORTHO05D002497 8.5e-07 57.0 36 72.2
MSTRG.2123 Avicennia marina HOM05D002128 ORTHO05D002497 8.5e-07 57.0 37 73.0
Carub.0002s1453 Capsella rubella HOM05D002128 ORTHO05D002497 8.5e-07 57.0 36 72.2
CARHR060710 Cardamine hirsuta HOM05D002128 ORTHO05D002497 8.5e-07 57.0 36 72.2
Cc11_g07690 Coffea canephora HOM05D002128 ORTHO05D002497 8.5e-07 57.0 40 67.5
Sabra18G0078000 Salix brachista HOM05D002128 ORTHO05D002497 8.5e-07 57.0 47 57.4
CAN.G282.129 Capsicum annuum HOM05D002128 ORTHO05D002497 1.1e-06 56.6 40 70.0
Cpa.g.c34279 Carica papaya HOM05D002128 ORTHO05D002497 1.1e-06 56.6 40 70.0
ClCG11G012080 Citrullus lanatus HOM05D002128 ORTHO05D012943 1.1e-06 56.6 47 55.3
Os02g0150800 Oryza sativa ssp. japonica HOM05D002128 ORTHO05D002497 1.1e-06 56.6 38 68.4
RcHm_v2.0_Chr4g0442801 Rosa chinensis HOM05D002128 ORTHO05D002497 1.1e-06 56.6 37 73.0
THA.LOC104807921 Tarenaya hassleriana HOM05D002128 ORTHO05D002497 1.1e-06 56.6 36 69.4
AL2G26860 Arabidopsis lyrata HOM05D002128 ORTHO05D002497 1.4e-06 56.2 36 72.2
C07p03580 Brassica napus HOM05D002128 ORTHO05D002497 1.4e-06 56.2 46 56.5
BolC7t40754H Brassica oleracea HOM05D002128 ORTHO05D002497 1.4e-06 56.2 46 56.5
Ca_17271_v3 Cicer arietinum L. HOM05D002128 ORTHO05D002497 1.4e-06 56.2 40 67.5
TPR.G19241 Trifolium pratense HOM05D002128 ORTHO05D002497 1.4e-06 56.2 40 67.5
QL03p036060 Quercus lobata HOM05D002128 ORTHO05D002497 1.9e-06 55.8 37 75.7
CDE05G2450 Ceratophyllum demersum HOM05D002128 ORTHO05D002497 2.5e-06 55.5 41 65.9
Migut.E00487 Erythranthe guttata HOM05D002128 ORTHO05D002497 2.5e-06 55.5 37 73.0
Thhalv10018284m.g Eutrema salsugineum HOM05D002128 ORTHO05D002497 2.5e-06 55.5 36 69.4
MBI19_g41131_MAGBIO Magnolia biondii HOM05D002128 ORTHO05D002497 2.5e-06 55.5 36 69.4
Os11g0547000 Oryza sativa ssp. japonica HOM05D002128 ORTHO05D002497 2.5e-06 55.5 38 71.1
Sp3g32390 Schrenkiella parvula HOM05D002128 ORTHO05D002497 2.5e-06 55.5 46 60.9
SEGI_26021 Sequoiadendron giganteum HOM05D002128 ORTHO05D012943 2.5e-06 55.5 42 61.9
TWI34G1245 Tripterygium wilfordii HOM05D002128 ORTHO05D002497 2.5e-06 55.5 46 58.7
ATR0118G010 Amborella trichopoda HOM05D002128 ORTHO05D012943 3.2e-06 55.1 38 60.5
A07p01720 Brassica napus HOM05D002128 ORTHO05D002497 3.2e-06 55.1 46 54.3
BraA07t27973Z Brassica rapa HOM05D002128 ORTHO05D002497 3.2e-06 55.1 46 54.3
Carub.0003s3316 Capsella rubella HOM05D002128 ORTHO05D002497 3.2e-06 55.1 46 58.7
Hma1.2p1_2317F.1_g319730 Hydrangea macrophylla HOM05D002128 ORTHO05D002497 3.2e-06 55.1 34 79.4
AL3G53000 Arabidopsis lyrata HOM05D002128 ORTHO05D002497 4.2e-06 54.7 46 58.7
AT2G18915 Arabidopsis thaliana HOM05D002128 ORTHO05D002497 4.2e-06 54.7 46 58.7
CSS0036518 Camellia sinensis var. sinensis HOM05D002128 ORTHO05D002497 4.2e-06 54.7 33 75.8
Ciclev10007762m.g Citrus clementina HOM05D002128 ORTHO05D002497 4.2e-06 54.7 34 70.6
Duzib168G0393 Durio zibethinus HOM05D002128 ORTHO05D002497 4.2e-06 54.7 46 56.5
HanXRQChr07g0202181 Helianthus annuus HOM05D002128 ORTHO05D002497 4.2e-06 54.7 34 73.5
Hma1.2p1_1303F.1_g274430 Hydrangea macrophylla HOM05D002128 ORTHO05D002497 4.2e-06 54.7 34 76.5
Oeu002549.2 Olea europaea HOM05D002128 ORTHO05D002497 4.2e-06 54.7 60 50.0
Potri.008G135200 Populus trichocarpa HOM05D002128 ORTHO05D002497 4.2e-06 54.7 40 65.0
Potri.010G105700 Populus trichocarpa HOM05D002128 ORTHO05D002497 4.2e-06 54.7 40 67.5
PGR044G1808 Punica granatum HOM05D002128 ORTHO05D002497 4.2e-06 54.7 41 63.4
Sc18g0007520 Simmondsia chinensis HOM05D002128 ORTHO05D002497 4.2e-06 54.7 46 56.5
SGA_v2.0_scaffold17G07942 Striga asiatica HOM05D002128 ORTHO05D002497 4.2e-06 54.7 39 69.2
GSVIVG01035529001 Vitis vinifera HOM05D002128 ORTHO05D002497 4.2e-06 54.7 44 61.4
arahy.Tifrunner.gnm1.ann1.MFKL5L Arachis hypogaea HOM05D002128 ORTHO05D002497 5.5e-06 54.3 35 71.4
BcaB03g16687 Brassica carinata HOM05D002128 ORTHO05D002497 5.5e-06 54.3 46 54.3
BcaC06g36501 Brassica carinata HOM05D002128 ORTHO05D002497 5.5e-06 54.3 46 54.3
CSS0009556 Camellia sinensis var. sinensis HOM05D002128 ORTHO05D002497 5.5e-06 54.3 34 73.5
Cc06_g13030 Coffea canephora HOM05D002128 ORTHO05D002497 5.5e-06 54.3 34 73.5
Dinv19554 Davidia involucrata HOM05D002128 ORTHO05D002497 5.5e-06 54.3 46 58.7
Duzib150G0646 Durio zibethinus HOM05D002128 ORTHO05D002497 5.5e-06 54.3 40 65.0
Thhalv10022601m.g Eutrema salsugineum HOM05D002128 ORTHO05D002497 5.5e-06 54.3 46 58.7
MD16G1018000 Malus domestica HOM05D002128 ORTHO05D002497 5.5e-06 54.3 36 72.2
Nn4g24402 Nelumbo nucifera HOM05D002128 ORTHO05D002497 5.5e-06 54.3 36 72.2
Rhsim01G0003000 Rhododendron simsii HOM05D002128 ORTHO05D002497 5.5e-06 54.3 34 73.5
SGA_v2.0_scaffold12G06077 Striga asiatica HOM05D002128 ORTHO05D002497 5.5e-06 54.3 34 73.5
TWI63G1787 Tripterygium wilfordii HOM05D002128 ORTHO05D002497 5.5e-06 54.3 40 65.0
HPP92_002295 Vanilla planifolia HOM05D002128 ORTHO05D002497 5.5e-06 54.3 38 63.2
VMungo1309G1825 Vigna mungo HOM05D002128 ORTHO05D002497 5.5e-06 54.3 40 65.0
Atru.chr7.866 Acer truncatum HOM05D002128 ORTHO05D002497 7.2e-06 53.9 46 56.5
BcaB03g16685 Brassica carinata HOM05D002128 ORTHO05D002497 7.2e-06 53.9 44 61.4
BcaB03g16686 Brassica carinata HOM05D002128 ORTHO05D002497 7.2e-06 53.9 46 63.0
A07p01730 Brassica napus HOM05D002128 ORTHO05D002497 7.2e-06 53.9 46 63.0
A07p01740 Brassica napus HOM05D002128 ORTHO05D002497 7.2e-06 53.9 46 63.0
C07p03590 Brassica napus HOM05D002128 ORTHO05D002497 7.2e-06 53.9 46 63.0
C07p03660 Brassica napus HOM05D002128 ORTHO05D002497 7.2e-06 53.9 46 63.0
BolC7t40755H Brassica oleracea HOM05D002128 ORTHO05D002497 7.2e-06 53.9 46 63.0
BolC7t40763H Brassica oleracea HOM05D002128 ORTHO05D002497 7.2e-06 53.9 46 63.0
BraA07t27974Z Brassica rapa HOM05D002128 ORTHO05D002497 7.2e-06 53.9 46 63.0
Duzib170G0636 Durio zibethinus HOM05D002128 ORTHO05D002497 7.2e-06 53.9 46 56.5
Migut.K00230 Erythranthe guttata HOM05D002128 ORTHO05D002497 7.2e-06 53.9 34 70.6
Eucgr.C00144 Eucalyptus grandis HOM05D002128 ORTHO05D002497 7.2e-06 53.9 34 70.6
Glyma.09G056100 Glycine max HOM05D002128 ORTHO05D002497 7.2e-06 53.9 40 65.0
RcHm_v2.0_Chr4g0401181 Rosa chinensis HOM05D002128 ORTHO05D002497 7.2e-06 53.9 46 56.5
Thecc.09G175000 Theobroma cacao HOM05D002128 ORTHO05D002497 7.2e-06 53.9 46 56.5
TAR629G2952 Trochodendron aralioides HOM05D002128 ORTHO05D002497 7.2e-06 53.9 37 64.9
unitig_22.g5603 Utricularia gibba HOM05D002128 ORTHO05D002497 7.2e-06 53.9 38 68.4
vmacro13133 Vaccinium macrocarpon HOM05D002128 ORTHO05D002497 7.2e-06 53.9 34 73.5
EL10Ac6g13136 Beta vulgaris HOM05D002128 ORTHO05D002497 9.4e-06 53.5 37 70.3
BcaC06g36490 Brassica carinata HOM05D002128 ORTHO05D002497 9.4e-06 53.5 46 63.0
CAN.G258.3 Capsicum annuum HOM05D002128 ORTHO05D002497 9.4e-06 53.5 46 58.7
ECA240G2480 Erigeron canadensis HOM05D002128 ORTHO05D002497 9.4e-06 53.5 34 70.6
HanXRQChr12g0365481 Helianthus annuus HOM05D002128 ORTHO05D002497 9.4e-06 53.5 34 73.5
Nitab4.5_0012551g0010 Nicotiana tabacum HOM05D002128 ORTHO05D002497 9.4e-06 53.5 46 58.7
Peaxi162Scf00655g00114 Petunia axillaris HOM05D002128 ORTHO05D002497 9.4e-06 53.5 41 65.9
QL02p098344 Quercus lobata HOM05D002128 ORTHO05D002497 9.4e-06 53.5 46 56.5
TAR060G0001 Trochodendron aralioides HOM05D002128 ORTHO05D012943 9.4e-06 53.5 47 53.2
GSVIVG01011652001 Vitis vinifera HOM05D002128 ORTHO05D002497 9.4e-06 53.5 40 62.5


User provided reference genes

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