Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.9e-95 352.4 173 100.0
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 3.2e-90 335.1 173 93.6
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.1e-88 327.8 173 90.8
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 1.5e-87 326.2 167 95.2
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 8.9e-85 317.0 171 87.7
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 1.5e-84 316.2 170 89.4
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 2.9e-83 312.0 171 87.7
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.8e-83 311.6 173 85.5
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 8.4e-83 310.5 171 87.7
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 8.4e-83 310.5 174 85.1
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 1.4e-82 309.7 173 86.7
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.9e-82 309.3 173 85.0
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 1.9e-82 309.3 174 85.1
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 5.4e-82 307.8 172 86.0
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 5.4e-82 307.8 173 88.4
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 7.1e-82 307.4 172 86.0
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 9.3e-82 307.0 171 86.5
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.2e-81 306.6 173 85.0
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 1.6e-81 306.2 170 84.7
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 2.1e-81 305.8 170 86.5
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.1e-81 305.8 172 85.5
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 2.7e-81 305.4 170 85.3
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 4.6e-81 304.7 174 85.1
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 4.6e-81 304.7 170 85.3
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 6.0e-81 304.3 175 83.4
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 7.8e-81 303.9 174 85.6
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 7.8e-81 303.9 174 83.3
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 1.0e-80 303.5 172 84.3
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.0e-80 303.5 168 86.3
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 1.0e-80 303.5 172 85.5
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 1.3e-80 303.1 170 84.7
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.3e-80 303.1 172 84.9
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.3e-80 303.1 174 85.1
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.7e-80 302.8 173 83.2
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.7e-80 302.8 174 83.9
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 2.3e-80 302.4 172 82.6
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.3e-80 302.4 172 82.6
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 3.0e-80 302.0 168 85.7
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 3.0e-80 302.0 172 82.6
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 5.1e-80 301.2 192 79.2
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 6.6e-80 300.8 165 87.9
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 8.7e-80 300.4 170 85.3
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 8.7e-80 300.4 172 82.0
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 1.9e-79 299.3 172 82.0
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 2.5e-79 298.9 170 83.5
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.3e-79 298.5 173 82.7
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 3.3e-79 298.5 170 84.1
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 7.3e-79 297.4 170 82.9
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 7.3e-79 297.4 173 82.1
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 9.6e-79 297.0 171 81.3
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.3e-78 296.6 165 87.9
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.6e-78 296.2 174 83.3
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 2.8e-78 295.4 165 86.7
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 2.8e-78 295.4 165 86.7
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 3.6e-78 295.0 160 90.6
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.6e-78 295.0 171 81.9
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.6e-78 295.0 171 81.9
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 4.8e-78 294.7 165 86.1
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.1e-77 293.5 173 78.6
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.1e-77 293.5 158 89.2
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.4e-77 293.1 173 78.6
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 1.4e-77 293.1 160 86.9
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 2.4e-77 292.4 170 82.4
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 2.4e-77 292.4 170 82.9
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 2.4e-77 292.4 165 86.1
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 5.3e-77 291.2 175 80.6
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 9.0e-77 290.4 159 86.8
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 9.0e-77 290.4 173 80.9
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 2.6e-76 288.9 170 79.4
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 2.6e-76 288.9 170 81.2
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 4.4e-76 288.1 168 80.4
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 5.8e-76 287.7 170 80.0
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 5.8e-76 287.7 170 84.1
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 5.8e-76 287.7 174 78.7
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 7.6e-76 287.3 170 79.4
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 7.6e-76 287.3 168 79.8
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 9.9e-76 287.0 171 81.3
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 9.9e-76 287.0 174 78.2
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 2.2e-75 285.8 170 78.8
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 2.2e-75 285.8 170 80.6
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 2.9e-75 285.4 171 81.9
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 3.8e-75 285.0 170 78.2
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 3.8e-75 285.0 170 78.8
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 3.8e-75 285.0 170 80.6
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 3.8e-75 285.0 163 82.8
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 4.9e-75 284.6 170 78.2
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 6.4e-75 284.3 174 78.2
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 8.4e-75 283.9 166 82.5
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 1.1e-74 283.5 174 79.3
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 1.1e-74 283.5 166 81.9
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.1e-74 283.5 170 77.6
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.4e-74 283.1 171 78.4
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.4e-74 283.1 171 78.4
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 1.4e-74 283.1 176 79.0
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 1.9e-74 282.7 170 78.2
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 1.9e-74 282.7 170 78.2
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 3.2e-74 282.0 170 77.6
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 5.4e-74 281.2 166 81.9
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 5.4e-74 281.2 174 79.3
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 7.1e-74 280.8 158 87.3
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 7.1e-74 280.8 162 81.5
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.6e-73 279.6 171 77.8
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 2.1e-73 279.3 173 79.2
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 2.1e-73 279.3 173 79.2
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 3.5e-73 278.5 174 78.7
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 4.6e-73 278.1 171 77.2
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 4.6e-73 278.1 215 67.0
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 4.6e-73 278.1 161 83.2
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 6.0e-73 277.7 170 78.2
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.0e-72 276.9 160 82.5
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 1.3e-72 276.6 171 76.6
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.3e-72 276.6 171 77.2
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 1.3e-72 276.6 157 84.1
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 3.0e-72 275.4 169 79.9
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 5.6e-71 271.2 171 77.8
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.6e-70 269.6 170 76.5
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 2.1e-70 269.2 166 80.1
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 2.8e-70 268.9 159 81.8
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 4.8e-70 268.1 166 76.5
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 1.4e-69 266.5 155 81.3
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 5.3e-69 264.6 165 77.0
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 6.9e-69 264.2 166 78.3
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 9.0e-69 263.8 156 80.1
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 5.8e-68 261.2 172 75.6
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 1.4e-66 256.5 159 80.5
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 1.4e-66 256.5 169 74.6
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 1.2e-65 253.4 142 85.9
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.7e-65 252.3 247 55.5
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 7.4e-63 244.2 140 82.9
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 6.9e-61 237.7 166 66.9
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 2.0e-60 236.1 177 63.8
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.0e-59 233.8 170 64.1
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.5e-58 229.2 170 68.8
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 3.2e-58 228.8 171 63.7
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 2.3e-48 196.1 134 73.1
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 1.5e-47 193.4 168 57.7
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 5.0e-43 178.3 161 59.0
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 3.6e-41 172.2 92 89.1
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.5e-36 155.2 92 81.5
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.3e-35 153.7 106 71.7
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.5e-31 140.2 169 42.0
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.3e-30 137.1 80 83.8
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 2.2e-27 126.3 179 36.9
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.8e-24 116.7 69 79.7
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 4.4e-23 112.1 68 76.5
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 4.4e-23 112.1 68 76.5
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 2.4e-21 106.3 100 57.0
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.3e-21 105.1 57 84.2
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 7.0e-21 104.8 54 88.9
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 7.7e-20 101.3 51 92.2
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 4.2e-18 95.5 165 34.5
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 5.5e-18 95.1 165 36.4
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 3.0e-16 89.4 83 59.0
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 1.5e-15 87.0 55 74.5
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 3.7e-14 82.4 90 50.0
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 7.7e-12 74.7 88 48.9
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 1.3e-11 73.9 51 72.5
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 1.7e-11 73.6 45 75.6
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 6.5e-11 71.6 37 89.2
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 9.4e-10 67.8 38 86.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 6.1e-09 65.1 50 64.0
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 1.8e-08 63.5 35 80.0
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 2.0e-07 60.1 64 48.4
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 2.6e-07 59.7 33 81.8


User provided reference genes

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