Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0369741 Helianthus annuus HOM05D001003 ORTHO05D003884 3.0e-81 305.1 150 100.0
HanXRQChr03g0072611 Helianthus annuus HOM05D001003 ORTHO05D003884 1.2e-53 213.4 154 74.0
HanXRQChr09g0246031 Helianthus annuus HOM05D001003 ORTHO05D003884 1.3e-44 183.3 121 77.7
HanXRQChr15g0491041 Helianthus annuus HOM05D001003 ORTHO05D003884 1.3e-44 183.3 121 77.7
HanXRQChr17g0545391 Helianthus annuus HOM05D001003 ORTHO05D003884 1.7e-44 183.0 112 82.1
Lsat_1_v5_gn_3_51780 Lactuca sativa HOM05D001003 ORTHO05D003884 5.1e-28 128.3 113 60.2
ECA246G4697 Erigeron canadensis HOM05D001003 ORTHO05D003884 1.6e-26 123.2 128 52.3
ECA233G1502 Erigeron canadensis HOM05D001003 ORTHO05D003884 2.2e-23 112.8 142 48.6
Lsat_1_v5_gn_8_49341 Lactuca sativa HOM05D001003 ORTHO05D003884 2.7e-21 105.9 142 44.4
HanXRQChr12g0361761 Helianthus annuus HOM05D001003 ORTHO05D003884 1.8e-20 103.2 142 47.2
Peaxi162Scf00222g00123 Petunia axillaris HOM05D001003 ORTHO05D003884 2.5e-19 99.4 136 45.6
HanXRQChr08g0211101 Helianthus annuus HOM05D001003 ORTHO05D003884 4.3e-19 98.6 143 45.5
GSVIVG01012479001 Vitis vinifera HOM05D001003 ORTHO05D003884 5.7e-19 98.2 120 46.7
Hma1.2p1_0354F.1_g133760 Hydrangea macrophylla HOM05D001003 ORTHO05D003884 9.7e-19 97.4 134 42.5
THA.LOC104822904 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 1.6e-18 96.7 101 48.5
Ciclev10030950m.g Citrus clementina HOM05D001003 ORTHO05D003884 2.8e-18 95.9 136 41.9
Nn3g17345 Nelumbo nucifera HOM05D001003 ORTHO05D003884 4.8e-18 95.1 136 40.4
C06p40510 Brassica napus HOM05D001003 ORTHO05D003884 6.3e-18 94.7 124 45.2
A07p35720 Brassica napus HOM05D001003 ORTHO05D003884 8.2e-18 94.4 120 45.0
BraA07t31159Z Brassica rapa HOM05D001003 ORTHO05D003884 8.2e-18 94.4 120 45.0
Hma1.2p1_0357F.1_g134320 Hydrangea macrophylla HOM05D001003 ORTHO05D003884 1.1e-17 94.0 144 38.9
BcaB03g15893 Brassica carinata HOM05D001003 ORTHO05D003884 1.4e-17 93.6 123 44.7
BcaB03g15903 Brassica carinata HOM05D001003 ORTHO05D003884 1.4e-17 93.6 123 44.7
BolC6t39380H Brassica oleracea HOM05D001003 ORTHO05D003884 1.4e-17 93.6 124 44.4
FAN12G4096 Fragaria x ananassa HOM05D001003 ORTHO05D003884 1.4e-17 93.6 138 42.8
FAN22G1214 Fragaria x ananassa HOM05D001003 ORTHO05D003884 1.4e-17 93.6 138 42.8
BolC2t08708H Brassica oleracea HOM05D001003 ORTHO05D003884 1.8e-17 93.2 123 45.5
CSS0002914 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D003884 1.8e-17 93.2 138 39.9
vmacro16352 Vaccinium macrocarpon HOM05D001003 ORTHO05D003884 2.4e-17 92.8 140 41.4
A02p15900 Brassica napus HOM05D001003 ORTHO05D003884 3.1e-17 92.4 123 42.3
FvH4_4g30660 Fragaria vesca HOM05D001003 ORTHO05D003884 3.1e-17 92.4 138 42.0
Aqoxy3G03506 Aquilegia oxysepala HOM05D001003 ORTHO05D003884 4.1e-17 92.0 138 42.0
Nn4g23292 Nelumbo nucifera HOM05D001003 ORTHO05D003884 5.3e-17 91.7 138 38.4
Nitab4.5_0000391g0090 Nicotiana tabacum HOM05D001003 ORTHO05D003884 5.3e-17 91.7 139 45.3
VMungo1215G0244 Vigna mungo HOM05D001003 ORTHO05D003884 5.3e-17 91.7 142 40.1
Cc11_g12510 Coffea canephora HOM05D001003 ORTHO05D003884 6.9e-17 91.3 141 44.7
Lalb_Chr17g0340901 Lupinus albus HOM05D001003 ORTHO05D003884 6.9e-17 91.3 137 42.3
Sed0009563 Sechium edule HOM05D001003 ORTHO05D003884 6.9e-17 91.3 135 43.0
Aa31LG4G11450 Aethionema arabicum HOM05D001003 ORTHO05D003884 9.0e-17 90.9 127 42.5
Lj2g0023172 Lotus japonicus HOM05D001003 ORTHO05D003884 9.0e-17 90.9 132 40.9
Lj2g0027573 Lotus japonicus HOM05D001003 ORTHO05D003884 9.0e-17 90.9 132 40.9
arahy.Tifrunner.gnm1.ann1.TY171H Arachis hypogaea HOM05D001003 ORTHO05D003884 1.2e-16 90.5 134 40.3
FAN17G2835 Fragaria x ananassa HOM05D001003 ORTHO05D003884 1.2e-16 90.5 136 41.2
Nitab4.5_0005448g0010 Nicotiana tabacum HOM05D001003 ORTHO05D003884 1.2e-16 90.5 139 42.4
Rhsim12G0133200 Rhododendron simsii HOM05D001003 ORTHO05D003884 1.2e-16 90.5 140 40.0
Dinv16693 Davidia involucrata HOM05D001003 ORTHO05D003884 1.5e-16 90.1 137 39.4
Glyma.01G053300 Glycine max HOM05D001003 ORTHO05D003884 1.5e-16 90.1 137 42.3
PGSC0003DMG400028336 Solanum tuberosum HOM05D001003 ORTHO05D003884 1.5e-16 90.1 143 42.0
TAR629G1202 Trochodendron aralioides HOM05D000759 ORTHO05D000574 1.5e-16 90.1 138 40.6
Gohir.D13G078700 Gossypium hirsutum HOM05D001003 ORTHO05D003884 2.0e-16 89.7 138 40.6
Gorai.013G090000 Gossypium raimondii HOM05D001003 ORTHO05D003884 2.0e-16 89.7 138 40.6
BcaB05g24450 Brassica carinata HOM05D001003 ORTHO05D003884 2.6e-16 89.4 122 43.4
Cpa.g.sc1.74 Carica papaya HOM05D001003 ORTHO05D003884 2.6e-16 89.4 138 42.8
Glyma.02G111800 Glycine max HOM05D001003 ORTHO05D003884 2.6e-16 89.4 137 42.3
Glyma.07G227700 Glycine max HOM05D001003 ORTHO05D003884 2.6e-16 89.4 142 41.5
Phvul.002G091400 Phaseolus vulgaris HOM05D001003 ORTHO05D003884 2.6e-16 89.4 137 40.9
Sopen05g007610 Solanum pennellii HOM05D001003 ORTHO05D003884 2.6e-16 89.4 143 42.7
arahy.Tifrunner.gnm1.ann1.2M98J4 Arachis hypogaea HOM05D001003 ORTHO05D003884 3.4e-16 89.0 134 39.6
BraA02t06643Z Brassica rapa HOM05D001003 ORTHO05D003884 3.4e-16 89.0 123 42.3
MELO3C012129.2 Cucumis melo HOM05D001003 ORTHO05D003884 3.4e-16 89.0 135 41.5
DCAR_007176 Daucus carota HOM05D001003 ORTHO05D003884 3.4e-16 89.0 139 41.0
Gohir.A04G146300 Gossypium hirsutum HOM05D001003 ORTHO05D003884 3.4e-16 89.0 138 41.3
RcHm_v2.0_Chr4g0439071 Rosa chinensis HOM05D001003 ORTHO05D003884 3.4e-16 89.0 138 41.3
Lj6A783T47 Lonicera japonica HOM05D001003 ORTHO05D003884 4.5e-16 88.6 146 40.4
Potri.010G163200 Populus trichocarpa HOM05D001003 ORTHO05D003884 4.5e-16 88.6 136 42.6
C06p36980 Brassica napus HOM05D001003 ORTHO05D003884 5.9e-16 88.2 134 41.0
BolC6t38808H Brassica oleracea HOM05D001003 ORTHO05D003884 5.9e-16 88.2 124 41.1
CSS0022092 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D003884 5.9e-16 88.2 138 39.9
CSS0040469 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D003884 5.9e-16 88.2 138 39.9
AUR62005856 Chenopodium quinoa HOM05D001003 ORTHO05D003884 5.9e-16 88.2 145 40.7
Solyc05g012790.4 Solanum lycopersicum HOM05D001003 ORTHO05D003884 5.9e-16 88.2 143 42.0
Ca_25945_v3 Cicer arietinum L. HOM05D001003 ORTHO05D003884 7.6e-16 87.8 136 43.4
Duzib251G0588 Durio zibethinus HOM05D001003 ORTHO05D003884 7.6e-16 87.8 138 41.3
Sp5g24470 Schrenkiella parvula HOM05D001003 ORTHO05D003884 7.6e-16 87.8 121 43.0
TPR.G19939 Trifolium pratense HOM05D001003 ORTHO05D003884 7.6e-16 87.8 138 38.4
Manes.01G031800 Manihot esculenta HOM05D001003 ORTHO05D003884 1.0e-15 87.4 140 39.3
Medtr5g042870 Medicago truncatula HOM05D001003 ORTHO05D003884 1.0e-15 87.4 138 39.9
QL03p069884 Quercus lobata HOM05D001003 ORTHO05D003884 1.0e-15 87.4 137 37.2
TWI75G0974 Tripterygium wilfordii HOM05D001003 ORTHO05D003884 1.0e-15 87.4 138 37.7
BcaC03g15082 Brassica carinata HOM05D001003 ORTHO05D003884 1.3e-15 87.0 123 43.9
BcaC08g45893 Brassica carinata HOM05D001003 ORTHO05D003884 1.3e-15 87.0 134 40.3
BraA07t30790Z Brassica rapa HOM05D001003 ORTHO05D003884 1.3e-15 87.0 125 42.4
Thhalv10018316m.g Eutrema salsugineum HOM05D001003 ORTHO05D003884 1.3e-15 87.0 124 43.5
Psat7g154200 Pisum sativum HOM05D001003 ORTHO05D003884 1.3e-15 87.0 137 42.3
PGR016G0006 Punica granatum HOM05D001003 ORTHO05D003884 1.3e-15 87.0 136 39.7
Hund25203 Selenicereus undatus HOM05D001003 ORTHO05D003884 1.3e-15 87.0 145 37.2
CsaV3_5G033080 Cucumis sativus L. HOM05D001003 ORTHO05D003884 1.7e-15 86.7 135 42.2
DCAR_030990 Daucus carota HOM05D001003 ORTHO05D003884 1.7e-15 86.7 139 40.3
TAR371G0663 Trochodendron aralioides HOM05D001003 ORTHO05D003884 1.7e-15 86.7 138 39.9
CARHR062300 Cardamine hirsuta HOM05D001003 ORTHO05D003884 2.2e-15 86.3 120 44.2
Gohir.A13G078500 Gossypium hirsutum HOM05D001003 ORTHO05D003884 2.2e-15 86.3 135 38.5
Gohir.D04G190700 Gossypium hirsutum HOM05D001003 ORTHO05D003884 3.8e-15 85.5 138 39.1
Gorai.012G186100 Gossypium raimondii HOM05D001003 ORTHO05D003884 3.8e-15 85.5 138 39.1
Lalb_Chr09g0329131 Lupinus albus HOM05D001003 ORTHO05D003884 3.8e-15 85.5 139 38.8
SalBow2G2671 Salvia bowleyana HOM05D001003 ORTHO05D003884 3.8e-15 85.5 137 42.3
SalBow2G3343 Salvia bowleyana HOM05D001003 ORTHO05D003884 3.8e-15 85.5 137 42.3
Thecc.02G338800 Theobroma cacao HOM05D001003 ORTHO05D003884 3.8e-15 85.5 136 39.0
BcaB03g15471 Brassica carinata HOM05D001003 ORTHO05D003884 5.0e-15 85.1 135 39.3
CAN.G1638.2 Capsicum annuum HOM05D001003 ORTHO05D003884 5.0e-15 85.1 143 42.7
Glyma.20G030100 Glycine max HOM05D001003 ORTHO05D003884 5.0e-15 85.1 142 39.4
Manes.05G106700 Manihot esculenta HOM05D001003 ORTHO05D003884 5.0e-15 85.1 140 38.6
Sed0024561 Sechium edule HOM05D001003 ORTHO05D003884 5.0e-15 85.1 134 37.3
TWI79G0452 Tripterygium wilfordii HOM05D001003 ORTHO05D003884 5.0e-15 85.1 139 38.8
Actinidia12306 Actinidia chinensis HOM05D001003 ORTHO05D003884 6.5e-15 84.7 138 39.1
Oeu021090.2 Olea europaea HOM05D001003 ORTHO05D003884 6.5e-15 84.7 143 38.5
THA.LOC104822031 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 6.5e-15 84.7 141 39.0
Potri.008G091700 Populus trichocarpa HOM05D001003 ORTHO05D003884 8.5e-15 84.3 136 39.7
Prupe.1G280400 Prunus persica HOM05D001003 ORTHO05D003884 8.5e-15 84.3 137 38.7
C02p26350 Brassica napus HOM05D001003 ORTHO05D003884 1.1e-14 84.0 123 43.1
Duzib248G0508 Durio zibethinus HOM05D001003 ORTHO05D003884 1.1e-14 84.0 138 40.6
arahy.Tifrunner.gnm1.ann1.I0GXIP Arachis hypogaea HOM05D001003 ORTHO05D003884 1.4e-14 83.6 102 48.0
Carub.0002s1602 Capsella rubella HOM05D001003 ORTHO05D003884 1.4e-14 83.6 121 43.8
CiPaw.05G129200 Carya illinoinensis HOM05D001003 ORTHO05D003884 1.4e-14 83.6 136 38.2
AUR62032848 Chenopodium quinoa HOM05D001003 ORTHO05D003884 1.4e-14 83.6 145 38.6
Sabra08G0068700 Salix brachista HOM05D001003 ORTHO05D003884 1.4e-14 83.6 157 38.2
Medtr4g082560 Medicago truncatula HOM05D001003 ORTHO05D003884 1.9e-14 83.2 138 36.2
TPR.G34088 Trifolium pratense HOM05D001003 ORTHO05D003884 1.9e-14 83.2 136 41.2
AT1G69420 Arabidopsis thaliana HOM05D001003 ORTHO05D003884 3.2e-14 82.4 123 43.1
arahy.Tifrunner.gnm1.ann1.LC0XC4 Arachis hypogaea HOM05D001003 ORTHO05D003884 3.2e-14 82.4 101 43.6
Duzib268G0875 Durio zibethinus HOM05D001003 ORTHO05D003884 3.2e-14 82.4 139 41.0
Oeu016759.2 Olea europaea HOM05D001003 ORTHO05D003884 3.2e-14 82.4 136 39.0
Rhsim12G0077800 Rhododendron simsii HOM05D001003 ORTHO05D003884 3.2e-14 82.4 137 40.1
SGA_v2.0_scaffold36G14416 Striga asiatica HOM05D001003 ORTHO05D003884 3.2e-14 82.4 125 43.2
HPP92_026177 Vanilla planifolia HOM05D003031 ORTHO05D003371 3.2e-14 82.4 126 38.1
AL2G28530 Arabidopsis lyrata HOM05D001003 ORTHO05D003884 5.5e-14 81.6 123 43.1
Haze_11951 Corylus avellana HOM05D001003 ORTHO05D003884 7.2e-14 81.3 137 38.7
THA.LOC104808647 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 7.2e-14 81.3 129 38.0
VMungo0251G2922 Vigna mungo HOM05D001003 ORTHO05D003884 7.2e-14 81.3 134 38.8
THA.LOC104822032 Tarenaya hassleriana HOM05D001003 ORTHO05D003884 9.3e-14 80.9 141 39.0
CANSAT64G2791 Cannabis sativa HOM05D001003 ORTHO05D003884 1.2e-13 80.5 138 39.1
SGA_v2.0_scaffold16G07738 Striga asiatica HOM05D001003 ORTHO05D003884 1.6e-13 80.1 125 40.8
EL10Ac6g13274 Beta vulgaris HOM05D001003 ORTHO05D003884 2.1e-13 79.7 147 35.4
Ah.02g129330 Amaranthus hybridus HOM05D001003 ORTHO05D003884 2.7e-13 79.3 141 38.3
Migut.L01236 Erythranthe guttata HOM05D001003 ORTHO05D003884 4.6e-13 78.6 141 34.8
Phvul.002G103600 Phaseolus vulgaris HOM05D001003 ORTHO05D003884 6.1e-13 78.2 134 38.1
Dinv34102 Davidia involucrata HOM05D001003 ORTHO05D003884 7.9e-13 77.8 101 43.6
Zm00001eb108370 Zea mays HOM05D001003 ORTHO05D003884 1.4e-12 77.0 130 36.2
unitig_8.g3189 Utricularia gibba HOM05D001003 ORTHO05D003884 2.3e-12 76.3 99 45.5
Sc04g0007840 Simmondsia chinensis HOM05D001003 ORTHO05D003884 3.0e-12 75.9 137 38.0
MSTRG.733 Avicennia marina HOM05D001003 ORTHO05D003884 3.9e-12 75.5 135 35.6
MD13G1067800 Malus domestica HOM05D001003 ORTHO05D003884 3.9e-12 75.5 132 36.4
PSO063G7276 Papaver somniferum HOM05D001003 ORTHO05D003884 3.9e-12 75.5 131 38.9
Zm00001eb326590 Zea mays HOM05D001003 ORTHO05D003884 3.9e-12 75.5 130 37.7
Cfa008922 Carpinus fangiana HOM05D001003 ORTHO05D003884 6.7e-12 74.7 137 37.2
PSO063G7182 Papaver somniferum HOM05D001003 ORTHO05D003884 6.7e-12 74.7 129 37.2
PGR102G0068 Punica granatum HOM05D001003 ORTHO05D003884 8.8e-12 74.3 130 37.7
ATR0730G187 Amborella trichopoda HOM05D001003 ORTHO05D003884 1.9e-11 73.2 146 34.9
unitig_22.g6501 Utricularia gibba HOM05D001003 ORTHO05D003884 1.9e-11 73.2 125 41.6
HPP92_010146 Vanilla planifolia HOM05D001003 ORTHO05D003884 5.7e-11 71.6 125 37.6
PSO478G5070 Papaver somniferum HOM05D001003 ORTHO05D003884 1.7e-10 70.1 133 38.3
PSO017G6613 Papaver somniferum HOM05D001003 ORTHO05D003884 2.2e-10 69.7 133 36.8
Oeu057653.1 Olea europaea HOM05D001003 ORTHO05D003884 2.8e-10 69.3 144 35.4
Zm00001eb027750 Zea mays HOM05D001003 ORTHO05D003884 3.7e-10 68.9 118 38.1
MBI19_g43435_MAGBIO Magnolia biondii HOM05D001003 ORTHO05D003884 6.3e-10 68.2 130 35.4
unitig_749.g13212 Utricularia gibba HOM05D001003 ORTHO05D003884 1.1e-09 67.4 112 39.3
Os10g0337500 Oryza sativa ssp. japonica HOM05D001003 ORTHO05D003884 1.8e-09 66.6 125 36.0
COL.COLO4_27957 Corchorus olitorius HOM05D001003 ORTHO05D003884 2.4e-09 66.2 125 36.0
Zm00001eb007140 Zea mays HOM05D001003 ORTHO05D003884 4.1e-09 65.5 125 34.4
Psat0s12312g0040 Pisum sativum HOM05D001003 ORTHO05D003884 6.9e-09 64.7 130 36.9
A07p31630 Brassica napus HOM05D001003 ORTHO05D003884 5.0e-07 58.5 102 39.2
MBI16_g14989_MAGBIO Magnolia biondii HOM05D001003 ORTHO05D003884 5.0e-07 58.5 141 34.0
Os03g0209500 Oryza sativa ssp. japonica HOM05D001003 ORTHO05D003884 1.4e-06 57.0 133 30.8
HanXRQChr12g0354901 Helianthus annuus HOM05D001003 ORTHO05D027563 3.2e-06 55.8 61 50.8
Os07g0596000 Oryza sativa ssp. japonica HOM05D001003 ORTHO05D003884 3.2e-06 55.8 130 31.5


User provided reference genes

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