Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 7.6e-115 417.2 208 100.0
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 3.9e-95 351.7 190 91.6
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 2.2e-82 309.3 189 77.8
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 1.2e-80 303.5 190 74.7
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 1.6e-64 250.0 190 59.5
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 1.6e-64 250.0 180 62.2
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 1.8e-63 246.5 188 58.5
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 4.0e-63 245.4 190 59.5
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 2.0e-62 243.0 190 57.9
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 4.4e-62 241.9 190 55.8
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 5.7e-62 241.5 190 59.5
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 1.7e-61 240.0 190 57.4
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 2.2e-61 239.6 185 56.2
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 2.2e-61 239.6 190 59.5
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 2.8e-61 239.2 190 57.9
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 2.8e-61 239.2 190 57.9
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 3.7e-61 238.8 188 58.5
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 3.7e-61 238.8 191 55.5
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.1e-60 237.3 188 58.0
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 1.1e-60 237.3 189 57.7
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 1.1e-60 237.3 189 56.1
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 1.8e-60 236.5 190 55.8
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 1.8e-60 236.5 181 57.5
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 2.4e-60 236.1 190 56.3
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 2.4e-60 236.1 190 57.9
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 4.1e-60 235.3 190 57.4
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 4.1e-60 235.3 189 57.7
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 5.4e-60 235.0 190 54.2
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 7.0e-60 234.6 190 55.3
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 1.6e-59 233.4 190 54.7
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.6e-59 233.4 190 54.7
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 2.0e-59 233.0 190 55.8
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 2.0e-59 233.0 189 58.2
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 2.7e-59 232.6 190 55.8
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 3.5e-59 232.3 190 54.2
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 3.5e-59 232.3 190 55.3
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 7.8e-59 231.1 190 54.2
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 1.3e-58 230.3 190 53.2
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.3e-58 230.3 186 54.3
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 1.3e-58 230.3 189 55.0
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.7e-58 229.9 188 56.4
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 1.7e-58 229.9 186 58.1
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 2.3e-58 229.6 185 62.7
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 2.3e-58 229.6 185 62.7
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 2.3e-58 229.6 177 59.9
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 2.9e-58 229.2 190 53.7
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 3.8e-58 228.8 189 56.1
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 6.6e-58 228.0 190 51.6
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 6.6e-58 228.0 189 55.0
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 8.6e-58 227.6 186 57.5
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 8.6e-58 227.6 189 54.5
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 8.6e-58 227.6 190 53.7
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 1.1e-57 227.3 185 59.5
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 1.1e-57 227.3 176 57.4
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 1.1e-57 227.3 189 54.5
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 1.1e-57 227.3 189 54.5
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.5e-57 226.9 186 53.8
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 1.5e-57 226.9 189 57.7
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 1.5e-57 226.9 189 55.6
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 2.5e-57 226.1 185 61.1
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 2.5e-57 226.1 185 58.9
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 2.5e-57 226.1 190 52.6
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 2.5e-57 226.1 184 54.9
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 3.3e-57 225.7 185 61.1
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 3.3e-57 225.7 186 57.0
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 4.3e-57 225.3 190 54.7
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 9.5e-57 224.2 185 60.5
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 9.5e-57 224.2 197 53.3
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 1.2e-56 223.8 190 55.8
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 1.2e-56 223.8 190 53.7
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.2e-56 223.8 189 54.0
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 1.6e-56 223.4 186 55.9
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 1.6e-56 223.4 186 57.0
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.6e-56 223.4 188 54.8
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 2.1e-56 223.0 190 52.1
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 2.1e-56 223.0 190 51.6
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 2.8e-56 222.6 189 54.5
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 3.6e-56 222.2 189 54.5
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 4.7e-56 221.9 190 53.2
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 8.0e-56 221.1 190 53.7
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 1.0e-55 220.7 184 52.7
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 1.0e-55 220.7 186 54.8
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 5.2e-55 218.4 189 51.9
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 6.8e-55 218.0 190 54.7
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 6.8e-55 218.0 184 52.2
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 8.9e-55 217.6 188 54.3
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 1.2e-54 217.2 190 52.6
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 2.6e-54 216.1 174 55.7
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 5.8e-54 214.9 179 53.1
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 1.7e-53 213.4 190 53.7
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 2.2e-53 213.0 179 52.0
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 2.4e-52 209.5 190 47.9
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 1.2e-51 207.2 179 50.3
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 2.7e-51 206.1 179 52.5
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 3.5e-51 205.7 190 48.9
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 4.6e-51 205.3 184 48.4
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 6.0e-51 204.9 192 47.9
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 6.0e-51 204.9 191 49.2
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 5.0e-50 201.8 156 59.6
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 9.5e-49 197.6 192 46.9
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 1.2e-48 197.2 188 50.0
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.1e-47 194.1 183 46.4
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 8.3e-45 184.5 182 44.5
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 1.1e-44 184.1 186 45.7
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 5.1e-42 175.3 190 46.3
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 5.6e-41 171.8 151 54.3
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 9.5e-41 171.0 194 45.9
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.8e-40 169.5 186 45.7
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 8.1e-40 167.9 190 43.7
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.1e-36 157.5 182 37.9
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 5.4e-36 155.2 141 52.5
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.5e-33 147.1 193 38.9
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 7.3e-33 144.8 121 53.7
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 7.3e-33 144.8 179 40.8
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 3.4e-30 136.0 182 39.0
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-23 114.4 187 34.8
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 6.9e-23 111.7 96 57.3
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-22 110.5 210 31.9
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.8e-22 108.6 212 31.1
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.9e-21 105.5 186 30.6
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 7.1e-20 101.7 175 32.0
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.3e-20 101.3 178 32.6
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.1e-19 100.1 154 31.8
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 2.3e-18 96.7 179 31.8
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 3.0e-18 96.3 169 31.4
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.9e-18 95.9 200 28.0
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.6e-18 95.1 170 31.2
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.6e-17 92.0 201 27.9
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.1e-16 90.1 172 30.2
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.8e-16 89.7 147 31.3
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.4e-15 86.7 148 29.7
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.0e-14 83.6 189 27.5
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.1e-12 77.8 202 28.2
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 4.6e-11 72.4 92 37.0
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 4.0e-07 59.3 171 26.9


User provided reference genes

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