Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 8.5e-196 686.8 343 100.0
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 3.2e-150 535.4 349 73.1
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.5e-118 429.5 347 58.8
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 7.4e-115 417.9 341 57.8
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 3.7e-114 415.6 250 78.8
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 4.8e-114 415.2 347 55.9
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 8.2e-114 414.5 342 57.0
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 2.4e-113 412.9 345 56.5
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 3.1e-113 412.5 283 65.7
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 6.9e-113 411.4 344 57.6
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 1.5e-112 410.2 345 56.8
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 1.5e-112 410.2 341 57.2
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 2.6e-112 409.5 345 56.5
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 4.5e-112 408.7 331 58.6
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 4.5e-112 408.7 338 57.4
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 7.6e-112 407.9 343 57.4
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 1.3e-111 407.1 322 59.9
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 2.9e-111 406.0 351 55.8
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 2.9e-111 406.0 341 57.2
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 6.5e-111 404.8 329 56.5
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 1.9e-110 403.3 283 64.3
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 1.9e-110 403.3 343 56.6
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 3.2e-110 402.5 331 57.4
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 4.2e-110 402.1 304 59.9
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 5.5e-110 401.7 338 55.6
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 5.5e-110 401.7 332 56.0
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 7.1e-110 401.4 345 55.1
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 9.3e-110 401.0 333 58.3
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 1.2e-109 400.6 345 54.5
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 3.5e-109 399.1 326 57.7
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 3.5e-109 399.1 344 53.8
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 7.9e-109 397.9 328 57.3
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 7.9e-109 397.9 345 54.2
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 1.0e-108 397.5 329 55.3
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 2.3e-108 396.4 326 57.1
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 3.0e-108 396.0 326 57.1
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 3.9e-108 395.6 326 57.4
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 5.1e-108 395.2 345 54.5
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.9e-107 393.3 331 56.2
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.9e-107 393.3 282 63.5
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.9e-107 393.3 282 63.5
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 2.5e-107 392.9 329 56.2
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 2.5e-107 392.9 326 57.1
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 4.3e-107 392.1 326 55.8
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 4.3e-107 392.1 330 55.2
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 1.3e-106 390.6 345 52.8
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.2e-106 389.8 282 63.1
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 6.3e-106 388.3 347 54.5
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 1.1e-105 387.5 330 56.4
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 1.4e-105 387.1 342 52.9
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 1.8e-105 386.7 340 53.8
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 5.3e-105 385.2 283 60.8
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 9.0e-105 384.4 329 55.0
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.2e-104 384.0 275 62.2
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 2.6e-104 382.9 348 54.0
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 3.4e-104 382.5 331 54.4
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 1.0e-103 380.9 332 56.6
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 1.7e-103 380.2 345 52.5
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 1.7e-103 380.2 330 53.3
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 6.5e-103 378.3 341 51.9
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 5.5e-102 375.2 346 51.2
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 5.5e-102 375.2 345 53.6
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 9.4e-102 374.4 342 53.8
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 9.4e-102 374.4 327 54.7
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 1.2e-101 374.0 329 55.6
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 1.6e-101 373.6 306 56.2
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 1.6e-101 373.6 281 58.4
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 3.6e-101 372.5 331 55.0
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 4.6e-101 372.1 320 57.8
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 4.6e-101 372.1 345 52.8
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 6.1e-101 371.7 284 59.5
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 7.9e-101 371.3 326 56.4
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 1.0e-100 370.9 323 58.2
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 1.0e-100 370.9 307 55.4
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 1.4e-100 370.5 323 58.2
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 1.4e-100 370.5 282 64.5
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 1.4e-100 370.5 282 64.5
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 2.3e-100 369.8 302 57.9
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 2.3e-100 369.8 284 58.5
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 3.0e-100 369.4 336 54.2
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 3.9e-100 369.0 362 50.6
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 3.9e-100 369.0 281 61.9
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 5.1e-100 368.6 282 58.5
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 5.1e-100 368.6 332 51.8
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 1.5e-99 367.1 333 57.1
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.5e-99 366.3 282 59.6
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 4.3e-99 365.5 283 60.1
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 4.3e-99 365.5 325 53.2
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 2.2e-98 363.2 340 52.1
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 6.9e-97 358.2 348 49.4
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 6.9e-97 358.2 358 48.9
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 1.2e-96 357.5 283 58.0
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 1.7e-95 353.6 275 58.2
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 1.1e-94 350.9 190 91.6
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 1.9e-94 350.1 346 48.0
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 7.2e-94 348.2 333 50.8
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 3.9e-92 342.4 332 48.5
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 2.8e-90 336.3 348 47.1
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 4.8e-90 335.5 284 54.2
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.3e-87 327.4 348 45.4
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 5.0e-87 325.5 312 48.7
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 1.1e-86 324.3 283 54.1
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.5e-86 323.2 333 48.9
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 2.3e-84 316.6 285 52.6
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.8e-82 309.7 335 47.5
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 5.3e-81 305.4 284 50.4
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 8.8e-76 288.1 294 49.7
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 7.5e-75 285.0 297 49.8
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.1e-73 279.3 218 57.8
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 9.1e-73 278.1 268 51.1
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 7.7e-72 275.0 331 40.8
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 4.8e-66 255.8 346 39.9
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 1.1e-65 254.6 291 41.9
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 6.6e-55 218.8 313 39.6
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-51 207.6 287 39.4
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.4e-49 200.3 333 35.1
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 9.2e-49 198.4 282 37.9
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.7e-47 194.1 152 59.9
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.6e-47 192.2 288 33.7
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-46 191.4 318 34.3
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.3e-46 189.5 303 33.3
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.2e-44 182.6 309 34.6
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.8e-44 182.2 316 34.8
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-43 181.0 308 36.0
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.6e-43 180.3 311 35.0
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.3e-42 175.3 309 33.7
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.4e-41 172.6 297 31.0
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.0e-40 169.1 259 35.9
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 6.0e-40 169.1 293 32.8
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-39 168.3 294 34.4
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.5e-38 161.8 316 28.8
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.6e-37 161.0 285 32.3
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.6e-37 159.8 237 36.3
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-36 158.3 316 28.2
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.4e-35 153.3 316 28.5
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 8.3e-34 148.7 318 30.5
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.4e-25 119.4 270 27.4
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 3.3e-22 110.2 96 57.3
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 1.6e-21 107.8 51 98.0
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 1.4e-20 104.8 277 28.2
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 3.6e-13 80.1 156 32.1
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-13 79.7 77 41.6
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 6.9e-12 75.9 74 44.6
AagrBONN_evm.TU.Sc2ySwM_117.3082 Anthoceros agrestis HOM05D005299 ORTHO05D072579 1.9e-06 57.8 130 26.2


User provided reference genes

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