Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 1.1e-170 603.2 306 100.0
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 2.4e-125 452.6 241 96.3
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 2.6e-103 379.4 269 72.5
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 1.9e-93 346.7 235 76.6
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 3.0e-91 339.3 241 69.3
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 1.1e-88 330.9 240 69.6
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 6.9e-88 328.2 242 67.4
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 9.0e-88 327.8 243 67.9
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 1.2e-87 327.4 268 62.3
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 1.5e-87 327.0 241 68.5
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 4.4e-87 325.5 243 66.7
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 5.8e-87 325.1 243 65.8
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 1.3e-86 323.9 242 65.3
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 2.9e-86 322.8 243 66.7
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 1.1e-85 320.9 243 66.7
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 1.4e-85 320.5 285 59.3
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.9e-85 320.1 240 67.5
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 3.2e-85 319.3 268 60.8
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 4.2e-85 318.9 243 66.7
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 7.1e-85 318.2 239 66.1
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 7.1e-85 318.2 243 65.8
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 9.3e-85 317.8 243 66.3
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 1.6e-84 317.0 241 66.0
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 2.1e-84 316.6 270 63.3
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 2.1e-84 316.6 238 65.5
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 4.6e-84 315.5 239 65.7
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 6.0e-84 315.1 241 64.7
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 7.8e-84 314.7 241 67.2
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 7.8e-84 314.7 241 68.5
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 1.0e-83 314.3 241 66.8
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 1.7e-83 313.5 243 64.2
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 5.1e-83 312.0 241 66.8
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 8.7e-83 311.2 243 62.6
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 9.6e-82 307.8 241 64.3
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 2.8e-81 306.2 270 60.0
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 2.8e-81 306.2 241 61.4
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 2.8e-81 306.2 241 61.4
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 1.1e-80 304.3 243 60.5
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 1.8e-80 303.5 245 62.4
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 4.0e-80 302.4 241 60.6
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 4.0e-80 302.4 252 61.5
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 5.3e-80 302.0 243 64.6
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 5.3e-80 302.0 242 65.3
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 6.9e-80 301.6 276 56.5
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 1.5e-79 300.4 269 56.9
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 2.6e-79 299.7 258 63.2
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 3.4e-79 299.3 269 56.5
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 3.4e-79 299.3 269 56.5
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 5.8e-79 298.5 282 56.0
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 7.6e-79 298.1 287 56.1
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 4.9e-78 295.4 242 61.6
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 6.4e-78 295.0 273 57.5
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 8.4e-78 294.7 270 58.9
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 4.2e-77 292.4 239 61.5
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 1.2e-76 290.8 237 61.2
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 4.6e-76 288.9 236 61.4
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 7.9e-76 288.1 282 53.2
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 7.9e-76 288.1 243 63.0
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 1.0e-75 287.7 280 54.3
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 5.6e-74 282.0 242 59.9
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 9.6e-74 281.2 213 67.1
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 1.3e-73 280.8 242 58.7
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 1.3e-73 280.8 283 54.1
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 8.1e-73 278.1 298 50.0
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 8.1e-73 278.1 242 59.1
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.4e-72 277.3 208 66.8
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 2.4e-72 276.6 269 53.2
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 2.4e-72 276.6 247 60.7
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 3.4e-71 272.7 242 58.7
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 7.6e-71 271.6 242 57.4
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 2.9e-70 269.6 239 57.7
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 3.2e-69 266.2 205 63.9
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 3.2e-69 266.2 239 55.2
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 9.3e-69 264.6 245 55.1
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 1.5e-66 257.3 214 59.3
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 1.9e-66 256.9 241 58.9
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 9.6e-66 254.6 219 63.9
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 9.6e-66 254.6 254 52.4
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 1.4e-64 250.8 187 68.4
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 1.4e-64 250.8 242 53.7
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 1.2e-63 247.7 205 60.5
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 4.5e-63 245.7 247 51.8
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 6.5e-62 241.9 257 50.6
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 8.4e-62 241.5 198 60.1
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 1.1e-61 241.1 211 58.8
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 5.5e-61 238.8 260 52.3
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 3.5e-60 236.1 186 63.4
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 2.0e-55 220.3 284 43.0
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 3.4e-55 219.5 258 48.4
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 2.9e-54 216.5 149 70.5
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 1.0e-51 208.0 210 51.9
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 1.8e-51 207.2 149 68.5
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 6.7e-51 205.3 176 58.5
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 1.7e-49 200.7 253 41.5
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 6.3e-49 198.7 149 64.4
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 1.8e-48 197.2 239 43.1
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 2.0e-47 193.7 265 40.8
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 3.9e-43 179.5 275 41.5
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.4e-40 171.0 124 65.3
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 1.8e-40 170.6 130 63.1
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 1.3e-38 164.5 239 43.5
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.9e-38 163.3 118 65.3
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 4.1e-32 142.9 95 68.4
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 2.0e-31 140.6 166 41.0
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 2.6e-31 140.2 155 47.7
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 5.0e-30 136.0 125 56.0
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 2.5e-29 133.7 93 67.7
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 2.7e-28 130.2 272 32.4
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 1.4e-27 127.9 147 53.7
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 2.2e-22 110.5 119 49.6
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 5.0e-22 109.4 98 55.1
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 5.0e-22 109.4 107 54.2
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 3.7e-17 93.2 96 53.1
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.4e-16 91.3 86 57.0
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 6.6e-14 82.4 94 47.9
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 2.8e-12 77.0 75 58.7
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 3.6e-12 76.6 51 74.5
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 1.0e-11 75.1 186 26.9
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 8.9e-11 72.0 66 59.1
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 2.4e-08 63.9 120 30.0
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 2.0e-07 60.8 81 40.7
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 7.8e-07 58.9 43 65.1
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 1.0e-06 58.5 43 67.4
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.0e-06 58.5 46 63.0
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 2.3e-06 57.4 43 65.1
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 5.0e-06 56.2 77 42.9


User provided reference genes

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