Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 6.3e-169 597.4 316 100.0
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 4.5e-151 538.1 319 89.0
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 4.1e-136 488.4 313 83.1
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 9.4e-133 477.2 318 79.9
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.0e-131 473.8 318 78.9
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 4.0e-131 471.9 318 78.3
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 4.0e-131 471.9 318 78.3
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 3.4e-130 468.8 318 77.4
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.3e-129 466.8 318 76.1
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 3.7e-129 465.3 318 76.7
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 4.8e-129 464.9 316 77.5
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 8.3e-129 464.2 324 76.5
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.1e-128 463.8 316 76.9
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.8e-128 463.0 320 79.4
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 7.0e-128 461.1 318 76.4
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 1.2e-127 460.3 315 76.2
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 2.0e-127 459.5 316 75.0
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 7.7e-127 457.6 316 74.7
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 7.7e-127 457.6 316 76.9
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 2.3e-126 456.1 318 76.1
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 2.3e-126 456.1 318 76.1
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 8.6e-126 454.1 318 75.8
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.9e-125 453.0 316 74.1
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.9e-125 453.0 316 74.4
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 3.3e-125 452.2 316 75.3
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 4.2e-125 451.8 318 74.5
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 5.5e-125 451.4 316 75.6
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 7.2e-125 451.1 318 74.5
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 7.2e-125 451.1 316 73.4
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 9.5e-125 450.7 318 74.2
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 9.5e-125 450.7 318 74.2
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 2.1e-124 449.5 316 74.7
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 2.1e-124 449.5 318 74.2
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.8e-124 449.1 316 75.6
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 4.7e-124 448.4 316 73.1
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 4.7e-124 448.4 318 75.5
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 6.1e-124 448.0 318 74.8
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 1.0e-123 447.2 318 74.8
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.8e-123 446.4 318 74.8
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.8e-123 446.4 318 73.9
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 2.3e-123 446.0 316 74.7
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.0e-123 445.7 318 74.2
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 4.0e-123 445.3 318 73.0
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 4.0e-123 445.3 316 73.7
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 8.9e-123 444.1 318 73.9
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 1.2e-122 443.7 362 67.1
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 1.5e-122 443.4 316 75.0
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 2.0e-122 443.0 316 73.7
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 2.6e-122 442.6 318 72.6
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.4e-122 442.2 318 73.6
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 3.4e-122 442.2 316 74.1
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 3.4e-122 442.2 318 75.2
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 4.4e-122 441.8 316 75.3
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.7e-122 441.4 319 73.7
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 5.7e-122 441.4 317 74.8
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 9.8e-122 440.7 318 73.9
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.7e-121 439.9 316 73.4
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 2.8e-121 439.1 317 74.4
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 2.8e-121 439.1 316 74.1
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 4.9e-121 438.3 316 72.5
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 8.3e-121 437.6 317 73.5
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.1e-120 437.2 316 73.1
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 1.8e-120 436.4 316 73.4
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 2.4e-120 436.0 316 73.7
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 5.4e-120 434.9 316 72.5
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 5.4e-120 434.9 316 74.4
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 7.0e-120 434.5 316 74.7
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 1.2e-119 433.7 316 74.1
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 2.0e-119 433.0 316 73.4
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 3.5e-119 432.2 317 72.9
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 5.9e-119 431.4 316 73.4
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 1.3e-118 430.3 319 72.7
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 5.0e-118 428.3 317 72.2
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.1e-117 427.2 318 72.0
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 2.5e-117 426.0 316 73.4
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 2.5e-117 426.0 318 71.7
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 3.3e-117 425.6 318 72.0
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 3.3e-117 425.6 318 71.7
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.3e-117 425.6 318 71.7
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 1.2e-116 423.7 318 72.0
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 4.7e-116 421.8 317 71.0
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 1.0e-115 420.6 316 69.0
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.0e-115 420.6 318 71.7
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 3.1e-115 419.1 316 72.5
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 5.2e-115 418.3 316 72.2
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 2.6e-114 416.0 301 74.4
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 9.8e-114 414.1 300 74.7
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.3e-113 413.7 318 68.6
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 1.7e-113 413.3 300 74.3
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 2.2e-113 412.9 316 68.7
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 2.9e-113 412.5 318 69.8
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 8.3e-113 411.0 300 74.0
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.4e-112 410.2 316 71.2
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 7.0e-112 407.9 353 64.6
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.5e-111 405.6 320 68.1
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 3.0e-110 402.5 284 76.1
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 5.0e-110 401.7 318 68.6
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.3e-109 399.1 319 69.9
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 8.0e-108 394.4 292 73.3
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 1.4e-107 393.7 292 72.6
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 5.2e-107 391.7 281 73.7
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 2.6e-106 389.4 321 67.0
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 4.4e-106 388.7 293 71.7
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 9.8e-106 387.5 317 66.6
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.7e-105 386.7 317 66.6
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 4.9e-105 385.2 319 66.1
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.4e-104 382.9 316 65.8
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 2.4e-104 382.9 278 73.0
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 4.1e-104 382.1 306 68.0
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 2.3e-102 376.3 256 76.6
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.1e-101 374.0 268 74.6
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 4.7e-100 368.6 268 72.0
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.6e-98 362.8 268 70.1
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.2e-96 355.9 264 72.7
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 5.1e-94 348.6 317 61.2
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 8.1e-92 341.3 316 63.0
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.8e-91 340.1 322 59.6
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 2.4e-91 339.7 242 73.1
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.2e-90 337.4 316 61.7
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.9e-89 332.0 228 74.6
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 9.3e-88 327.8 316 58.5
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.2e-82 310.8 316 57.3
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 4.2e-80 302.4 225 68.9
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.4e-72 276.6 391 47.3
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 5.4e-72 275.4 746 31.8
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 6.0e-71 271.9 320 48.8
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 3.0e-70 269.6 311 51.1
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.3e-65 254.2 318 45.0
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 6.2e-60 235.3 181 73.5
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 1.0e-57 228.0 293 47.4
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 8.2e-52 208.4 190 62.1
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 2.0e-50 203.8 255 53.3
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 8.5e-49 198.4 158 70.9
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.6e-47 194.1 150 73.3
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.4e-43 180.3 121 80.2
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 2.6e-42 176.8 120 79.2
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 5.0e-41 172.6 149 61.1
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.4e-38 164.5 250 42.0
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 3.1e-35 153.3 112 68.8
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 5.3e-35 152.5 256 44.5
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 2.9e-33 146.7 309 34.6
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.9e-32 144.1 91 79.1
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 1.2e-31 141.4 133 66.2
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 5.3e-27 125.9 152 55.3
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.6e-26 124.4 110 60.9
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.0e-25 121.7 93 67.7
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 9.4e-24 115.2 99 62.6
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.0e-22 111.7 83 73.5
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.5e-21 107.8 89 60.7
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 1.3e-17 94.7 397 25.7
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.9e-16 90.9 67 65.7
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.7e-15 87.0 62 75.8
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 6.3e-12 75.9 90 51.1
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.1e-11 75.1 90 54.4
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 2.3e-09 67.4 162 34.0
Lsat_1_v5_gn_3_37540 Lactuca sativa HOM05D004764 ORTHO05D005580 5.6e-08 62.8 51 68.6
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 2.3e-06 57.4 42 64.3


User provided reference genes

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