Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 0.0e+00 1134.4 599 100.0
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 6.2e-218 761.1 606 70.5
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 5.0e-183 645.2 436 79.8
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 8.8e-180 634.4 641 58.2
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 5.3e-169 598.6 633 56.2
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 7.7e-168 594.7 629 56.3
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.1e-166 590.9 629 56.0
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.9e-166 590.1 619 56.9
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 1.9e-166 590.1 626 54.2
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 2.5e-166 589.7 626 56.5
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 8.0e-165 584.7 629 55.0
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 8.0e-165 584.7 638 53.8
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 3.9e-164 582.4 624 55.4
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.8e-162 576.2 665 52.9
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 4.2e-158 562.4 628 55.6
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 6.1e-157 558.5 641 54.6
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 4.0e-156 555.8 631 54.2
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 4.0e-156 555.8 640 51.2
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 1.3e-154 550.8 649 53.6
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 1.4e-153 547.4 616 53.6
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 1.6e-152 543.9 637 52.6
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 2.9e-151 539.7 639 52.3
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 3.2e-150 536.2 631 50.6
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.2e-150 536.2 647 50.7
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 4.2e-150 535.8 625 52.8
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 9.4e-150 534.6 625 52.5
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 1.6e-149 533.9 640 52.8
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 6.1e-149 531.9 642 51.4
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 8.0e-149 531.6 642 51.1
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 8.8e-148 528.1 624 51.4
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 1.5e-147 527.3 622 52.9
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 4.4e-147 525.8 619 51.2
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 9.8e-147 524.6 720 49.0
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 9.8e-147 524.6 654 51.8
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.8e-146 523.1 643 50.9
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 8.3e-146 521.5 720 49.0
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 1.1e-145 521.2 641 49.5
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 1.1e-142 511.1 631 48.5
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.0e-140 504.6 642 50.0
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.4e-140 504.2 643 49.3
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 1.2e-139 501.1 650 48.2
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 4.4e-139 499.2 589 52.0
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 7.5e-139 498.4 530 54.7
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 2.9e-138 496.5 615 48.3
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 3.2e-137 493.0 648 49.4
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 9.2e-137 491.5 636 49.8
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.6e-136 490.7 619 50.7
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 4.3e-134 482.6 701 46.8
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 5.6e-134 482.3 659 46.4
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 7.3e-134 481.9 593 49.2
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 9.5e-134 481.5 631 50.1
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.6e-133 479.6 594 50.0
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 6.2e-133 478.8 628 47.0
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 1.0e-132 478.0 634 48.7
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 2.6e-131 473.4 631 48.3
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 3.4e-131 473.0 644 48.3
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.7e-130 470.7 608 48.7
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 2.2e-130 470.3 645 47.6
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 6.4e-130 468.8 638 46.2
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 8.3e-130 468.4 642 48.4
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.1e-129 468.0 638 45.3
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 1.4e-129 467.6 638 45.3
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 5.4e-129 465.7 621 47.0
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 1.6e-128 464.2 638 48.9
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 6.0e-128 462.2 641 46.6
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 6.0e-128 462.2 649 46.7
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 2.3e-127 460.3 652 48.3
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 3.9e-127 459.5 623 48.6
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 1.5e-126 457.6 645 46.5
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 1.9e-126 457.2 682 45.6
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 1.9e-126 457.2 682 45.6
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 1.2e-125 454.5 644 44.6
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 2.8e-125 453.4 640 45.9
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 4.7e-125 452.6 642 46.4
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.2e-123 448.0 618 48.1
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 2.0e-123 447.2 618 47.1
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 4.4e-123 446.0 638 46.4
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 2.9e-122 443.4 622 46.3
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 1.4e-121 441.0 577 50.4
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 2.5e-118 430.3 615 46.5
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 3.3e-118 429.9 654 44.6
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 3.6e-117 426.4 643 45.4
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 3.6e-117 426.4 643 45.4
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 1.4e-116 424.5 640 45.0
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 1.8e-116 424.1 598 45.3
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 8.9e-116 421.8 610 46.9
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 1.7e-114 417.5 605 44.5
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 6.4e-114 415.6 650 43.7
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 1.1e-113 414.8 501 51.5
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 1.9e-113 414.1 650 43.5
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 7.1e-113 412.1 623 44.0
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 9.2e-113 411.8 608 45.4
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 2.8e-109 400.2 612 45.6
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 8.1e-109 398.7 636 45.1
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 8.4e-106 388.7 618 43.5
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 1.4e-105 387.9 576 45.0
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 2.8e-101 373.6 605 43.3
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 1.2e-96 358.2 633 42.7
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 1.0e-95 355.1 441 49.9
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 9.6e-94 348.6 397 50.4
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 1.4e-89 334.7 686 39.5
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 3.8e-82 310.1 360 51.7
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 4.5e-75 286.6 532 37.6
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.9e-73 281.2 698 34.1
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 9.0e-68 262.3 290 52.8
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 4.8e-61 240.0 175 82.3
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.2e-56 225.3 256 53.9
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 1.1e-54 218.8 495 34.3
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 8.5e-50 202.6 253 47.8
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 5.9e-43 179.9 183 54.6
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 8.0e-40 169.5 517 30.8
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 2.6e-38 164.5 126 69.0
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 8.5e-34 149.4 260 34.6
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 8.0e-32 142.9 114 66.7
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 3.0e-31 141.0 166 50.6
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 2.0e-30 138.3 74 94.6
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 4.9e-29 133.7 193 41.5
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 6.3e-29 133.3 128 57.8
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.1e-28 132.5 99 69.7
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.1e-28 130.6 153 51.6
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 3.5e-27 127.5 508 28.0
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 7.7e-27 126.3 498 27.5
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.2e-24 119.0 306 38.2
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 4.0e-23 114.0 586 24.2
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 8.9e-23 112.8 502 26.7
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.2e-22 112.5 76 72.4
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 9.2e-20 102.8 194 39.2
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 1.0e-18 99.4 134 42.5
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 1.8e-15 88.6 205 37.1
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 8.9e-15 86.3 71 62.0
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 1.2e-14 85.9 85 49.4
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 4.1e-12 77.4 69 50.7
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 9.5e-09 66.2 173 35.3
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.1e-08 65.1 68 38.2
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.4e-07 62.4 47 63.8
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 8.9e-07 59.7 198 35.4


User provided reference genes

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