Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 6.0e-244 847.0 417 100.0
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 9.0e-200 700.3 389 86.9
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 1.1e-194 683.3 391 85.9
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 1.4e-184 649.8 392 80.1
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 1.3e-182 643.3 390 79.2
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 2.2e-177 625.9 388 78.9
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 1.4e-171 606.7 418 72.2
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 4.0e-171 605.1 414 73.2
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 4.0e-171 605.1 415 71.6
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 5.7e-170 601.3 419 71.8
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 7.5e-170 600.9 416 71.4
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 6.3e-169 597.8 416 70.9
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 1.4e-168 596.7 394 74.1
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 1.6e-167 593.2 390 73.6
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 2.0e-167 592.8 390 72.8
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 4.5e-167 591.7 415 70.8
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.5e-167 591.7 415 70.8
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 5.9e-167 591.3 412 70.1
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 7.7e-167 590.9 393 73.3
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.0e-166 590.5 393 73.3
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.7e-166 589.7 408 71.6
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 6.5e-166 587.8 391 73.4
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 1.1e-165 587.0 392 73.5
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.1e-165 587.0 419 69.9
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 2.5e-165 585.9 403 72.0
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 3.2e-165 585.5 394 73.1
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.2e-165 584.3 415 69.9
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 7.2e-165 584.3 415 70.6
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 9.5e-165 583.9 396 72.5
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 9.5e-165 583.9 414 70.5
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 1.6e-164 583.2 396 72.5
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 6.1e-164 581.3 413 70.9
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 2.3e-163 579.3 389 74.0
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 5.2e-163 578.2 394 72.3
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 5.2e-163 578.2 417 69.5
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 6.8e-163 577.8 394 71.3
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 8.8e-163 577.4 413 70.7
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.2e-162 577.0 406 72.2
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 1.5e-162 576.6 386 73.6
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.5e-162 576.6 406 68.0
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 2.0e-162 576.2 397 70.8
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 2.6e-162 575.9 394 71.1
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 7.5e-162 574.3 411 71.8
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.3e-161 573.5 415 68.9
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.2e-161 572.8 419 69.2
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 2.2e-161 572.8 400 70.0
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.9e-161 571.6 419 69.0
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 6.3e-161 571.2 424 69.6
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 6.3e-161 571.2 395 71.9
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 8.3e-161 570.9 390 72.8
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 1.4e-160 570.1 332 81.6
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 3.1e-160 568.9 417 67.6
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 3.1e-160 568.9 419 68.7
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 9.2e-160 567.4 398 69.6
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 9.2e-160 567.4 393 70.2
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.2e-159 567.0 419 66.8
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 1.6e-159 566.6 395 71.9
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 3.5e-159 565.5 386 71.8
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 4.5e-159 565.1 394 70.6
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 5.9e-159 564.7 408 69.4
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 2.9e-158 562.4 391 70.8
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 8.6e-158 560.8 395 71.1
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 1.1e-157 560.5 397 69.5
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 1.5e-157 560.1 391 70.1
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 5.6e-157 558.1 407 69.8
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 9.5e-157 557.4 394 69.3
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 1.6e-156 556.6 417 66.7
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 1.6e-156 556.6 395 68.1
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 2.1e-156 556.2 391 69.8
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 2.8e-156 555.8 391 69.1
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 3.6e-156 555.4 396 68.7
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 4.7e-156 555.1 417 66.7
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 6.1e-156 554.7 391 69.6
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 3.0e-155 552.4 416 65.6
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 1.5e-154 550.1 391 68.8
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 7.5e-154 547.7 408 68.1
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 7.5e-154 547.7 389 69.4
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 9.8e-154 547.4 418 67.2
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 1.7e-153 546.6 412 66.7
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 2.2e-153 546.2 399 68.2
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 2.2e-153 546.2 416 65.6
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 2.9e-153 545.8 411 67.2
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 4.9e-153 545.0 389 68.6
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 4.9e-153 545.0 389 68.6
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 4.9e-153 545.0 386 70.2
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 8.3e-153 544.3 391 68.8
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 8.3e-153 544.3 422 65.6
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 7.0e-152 541.2 397 68.8
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 1.2e-151 540.4 388 69.1
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 2.7e-151 539.3 395 68.1
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 2.7e-151 539.3 398 67.6
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 2.7e-151 539.3 395 68.1
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 2.7e-151 539.3 388 68.6
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 3.5e-151 538.9 385 69.1
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 1.7e-150 536.6 388 68.3
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 6.6e-150 534.6 422 65.4
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 5.6e-149 531.6 410 66.1
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 7.3e-149 531.2 389 67.4
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 6.2e-148 528.1 360 72.5
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.0e-146 523.1 423 64.3
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 5.8e-146 521.5 409 64.3
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 6.0e-143 511.5 406 64.0
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 6.0e-143 511.5 414 65.0
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 1.3e-142 510.4 447 61.5
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 5.0e-142 508.4 397 62.5
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 2.1e-140 503.1 409 61.1
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.8e-140 502.7 393 63.1
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.1e-139 500.7 418 63.6
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 1.1e-139 500.7 379 66.8
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.3e-139 499.6 400 62.5
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 4.0e-139 498.8 394 64.2
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 6.8e-139 498.0 335 73.1
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 8.9e-139 497.7 386 64.2
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 5.8e-138 495.0 414 60.6
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 9.8e-138 494.2 401 62.3
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 2.2e-137 493.0 392 64.3
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 2.2e-137 493.0 404 62.6
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 3.7e-137 492.3 293 79.5
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 9.2e-136 487.6 388 62.4
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 9.2e-136 487.6 415 60.5
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 2.1e-135 486.5 391 62.9
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 1.7e-134 483.4 405 61.5
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 3.0e-134 482.6 390 62.6
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 3.9e-134 482.3 419 58.9
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 7.3e-133 478.0 388 61.6
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 6.2e-132 474.9 390 62.3
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.6e-124 450.3 385 59.5
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.3e-121 440.7 242 83.9
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.4e-120 437.2 404 55.7
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 9.0e-115 417.9 284 73.6
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.4e-105 385.2 228 77.2
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.4e-105 385.2 225 78.2
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.5e-96 356.7 286 62.9
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 2.7e-95 353.2 414 47.6
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.1e-92 343.6 272 59.2
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 3.1e-91 339.7 393 46.6
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 5.3e-91 339.0 427 44.0
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 1.0e-89 334.7 285 59.3
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 2.5e-88 330.1 256 60.9
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 4.8e-84 315.8 235 66.8
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.1e-77 294.7 172 82.6
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.5e-73 278.9 175 78.3
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 1.0e-62 245.0 153 74.5
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.8e-57 226.5 253 47.0
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 5.9e-50 202.6 198 56.1
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.1e-48 198.4 174 63.2
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 8.0e-47 192.2 222 50.0
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.0e-42 177.6 186 55.9
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.9e-41 173.7 146 59.6
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 8.6e-41 172.2 227 39.6
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 1.9e-40 171.0 98 80.6
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 3.0e-33 147.1 201 43.8
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.1e-32 145.2 327 30.3
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 1.5e-32 144.8 82 79.3
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 5.2e-30 136.3 290 34.8
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 3.7e-28 130.2 238 35.7
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 8.3e-28 129.0 246 37.0
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 4.1e-27 126.7 76 75.0
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 1.2e-26 125.2 338 29.3
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 2.8e-23 114.0 241 35.7
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 9.9e-21 105.5 249 30.5
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.3e-20 105.1 68 67.6
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.7e-20 103.6 68 66.2
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.4e-20 102.8 68 66.2
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 3.3e-16 90.5 141 34.8
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 4.3e-16 90.1 73 58.9
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 2.8e-15 87.4 213 31.5
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 2.3e-09 67.8 67 44.8
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.1e-09 66.6 38 73.7
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 3.3e-08 63.9 119 36.1
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 2.4e-06 57.8 153 32.0
BolC2t07012H Brassica oleracea HOM05D004174 ORTHO05D004624 9.0e-06 55.8 48 54.2


User provided reference genes

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