Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0368711 Helianthus annuus HOM05D005232 ORTHO05D006389 3.0e-170 601.7 290 100.0
HanXRQChr08g0218691 Helianthus annuus HOM05D005232 ORTHO05D006389 6.0e-134 481.1 308 81.2
ECA233G2984 Erigeron canadensis HOM05D005232 ORTHO05D006389 9.9e-121 437.2 313 75.7
Dinv13548 Davidia involucrata HOM05D005232 ORTHO05D006389 4.2e-119 431.8 320 73.1
Lj8A722G14 Lonicera japonica HOM05D005232 ORTHO05D006389 6.7e-117 424.5 322 71.1
Lsat_1_v5_gn_8_20461 Lactuca sativa HOM05D005232 ORTHO05D006389 4.3e-116 421.8 309 75.4
Nn1g01560 Nelumbo nucifera HOM05D005232 ORTHO05D006389 3.1e-114 415.6 317 70.3
Cc02_g11150 Coffea canephora HOM05D005232 ORTHO05D006389 1.5e-113 413.3 317 69.7
GSVIVG01028893001 Vitis vinifera HOM05D005232 ORTHO05D006389 4.5e-113 411.8 318 69.8
Sabra15G0156100 Salix brachista HOM05D005232 ORTHO05D006389 1.3e-112 410.2 323 68.7
Thecc.08G165200 Theobroma cacao HOM05D005232 ORTHO05D006389 1.7e-112 409.8 322 68.3
Cfa016269 Carpinus fangiana HOM05D005232 ORTHO05D006389 2.9e-112 409.1 318 69.8
Actinidia22445 Actinidia chinensis HOM05D005232 ORTHO05D006389 8.4e-112 407.5 326 68.4
CiPaw.05G164300 Carya illinoinensis HOM05D005232 ORTHO05D006389 1.4e-111 406.8 318 69.8
TWI14G0968 Tripterygium wilfordii HOM05D005232 ORTHO05D006389 4.2e-111 405.2 324 67.0
TAR375G0877 Trochodendron aralioides HOM05D005232 ORTHO05D006389 6.0e-110 401.4 317 68.1
Oeu014380.1 Olea europaea HOM05D005232 ORTHO05D006389 1.3e-109 400.2 320 67.8
PGR102G0407 Punica granatum HOM05D005232 ORTHO05D006389 5.1e-109 398.3 322 67.1
Gohir.A07G074600 Gossypium hirsutum HOM05D005232 ORTHO05D006389 3.3e-108 395.6 319 67.1
Manes.14G024000 Manihot esculenta HOM05D005232 ORTHO05D006389 3.3e-108 395.6 319 68.7
Potri.012G144400 Populus trichocarpa HOM05D005232 ORTHO05D006389 1.3e-107 393.7 323 67.5
QL09p013403 Quercus lobata HOM05D005232 ORTHO05D006389 2.8e-107 392.5 321 67.6
Gorai.001G083900 Gossypium raimondii HOM05D005232 ORTHO05D006389 3.7e-107 392.1 319 67.1
Nitab4.5_0013274g0010 Nicotiana tabacum HOM05D005232 ORTHO05D006389 3.7e-107 392.1 306 69.0
Nitab4.5_0007148g0020 Nicotiana tabacum HOM05D005232 ORTHO05D006389 6.3e-107 391.3 320 66.9
Haze_00026 Corylus avellana HOM05D005232 ORTHO05D006389 1.1e-106 390.6 333 65.2
Sabra12G0108400 Salix brachista HOM05D005232 ORTHO05D006389 1.1e-106 390.6 356 61.8
Oeu041197.1 Olea europaea HOM05D005232 ORTHO05D006389 2.4e-106 389.4 318 67.6
TAR629G2045 Trochodendron aralioides HOM05D005232 ORTHO05D006389 2.4e-106 389.4 317 67.5
CSS0049575 Camellia sinensis var. sinensis HOM05D005232 ORTHO05D006389 5.3e-106 388.3 320 66.6
Gohir.D07G079300 Gossypium hirsutum HOM05D005232 ORTHO05D006389 5.3e-106 388.3 319 66.8
Solyc05g056220.3 Solanum lycopersicum HOM05D005232 ORTHO05D006389 6.9e-106 387.9 311 68.8
Sopen05g034610 Solanum pennellii HOM05D005232 ORTHO05D006389 6.9e-106 387.9 311 68.8
ClCG07G016960 Citrullus lanatus HOM05D005232 ORTHO05D006389 1.5e-105 386.7 315 67.9
vmacro04863 Vaccinium macrocarpon HOM05D005232 ORTHO05D006389 1.5e-105 386.7 310 66.8
Atru.chr1.399 Acer truncatum HOM05D005232 ORTHO05D006389 2.0e-105 386.3 328 64.6
Eucgr.C03422 Eucalyptus grandis HOM05D005232 ORTHO05D006389 2.0e-105 386.3 317 66.9
Potri.015G147200 Populus trichocarpa HOM05D005232 ORTHO05D006389 2.6e-105 386.0 322 66.1
MSTRG.380 Avicennia marina HOM05D005232 ORTHO05D006389 3.4e-105 385.6 320 66.6
Lalb_Chr02g0141181 Lupinus albus HOM05D005232 ORTHO05D006389 3.4e-105 385.6 323 67.5
Rhsim09G0150800 Rhododendron simsii HOM05D005232 ORTHO05D006389 3.4e-105 385.6 307 67.4
SalBow7G4258 Salvia bowleyana HOM05D005232 ORTHO05D006389 3.4e-105 385.6 320 66.6
vmacro22314 Vaccinium macrocarpon HOM05D005232 ORTHO05D006389 7.6e-105 384.4 319 66.1
RhsimUnG0027300 Rhododendron simsii HOM05D005232 ORTHO05D006389 1.0e-104 384.0 319 65.8
SGA_v2.0_scaffold51G18697 Striga asiatica HOM05D005232 ORTHO05D006389 1.7e-104 383.3 322 66.8
Rhsim03G0189000 Rhododendron simsii HOM05D005232 ORTHO05D006389 2.2e-104 382.9 317 65.9
RcHm_v2.0_Chr2g0116381 Rosa chinensis HOM05D005232 ORTHO05D006389 2.2e-104 382.9 317 67.5
Glyma.20G161800 Glycine max HOM05D005232 ORTHO05D006389 2.9e-104 382.5 316 66.8
Duzib170G0925 Durio zibethinus HOM05D005232 ORTHO05D006389 5.0e-104 381.7 322 66.5
Prupe.2G298500 Prunus persica HOM05D005232 ORTHO05D006389 5.0e-104 381.7 318 66.7
TWI39G1086 Tripterygium wilfordii HOM05D005232 ORTHO05D006389 5.0e-104 381.7 324 65.1
Ciclev10004180m.g Citrus clementina HOM05D005232 ORTHO05D006389 1.9e-103 379.8 318 67.0
MELO3C017648.2 Cucumis melo HOM05D005232 ORTHO05D006389 1.9e-103 379.8 312 67.6
CsaV3_4G004180 Cucumis sativus L. HOM05D005232 ORTHO05D006389 1.9e-103 379.8 312 67.6
FvH4_1g22240 Fragaria vesca HOM05D005232 ORTHO05D006389 3.2e-103 379.0 317 66.6
FAN19G1688 Fragaria x ananassa HOM05D005232 ORTHO05D006389 3.2e-103 379.0 317 66.6
MSTRG.8138 Avicennia marina HOM05D005232 ORTHO05D006389 4.2e-103 378.6 316 66.1
Ca_10736_v3 Cicer arietinum L. HOM05D005232 ORTHO05D006389 4.2e-103 378.6 323 65.6
Glyma.10G232300 Glycine max HOM05D005232 ORTHO05D006389 7.2e-103 377.9 320 66.6
CAN.G694.95 Capsicum annuum HOM05D005232 ORTHO05D006389 9.3e-103 377.5 318 66.7
CSS0011841 Camellia sinensis var. sinensis HOM05D005232 ORTHO05D006389 3.6e-102 375.6 320 65.9
FAN23G0292 Fragaria x ananassa HOM05D005232 ORTHO05D006389 3.6e-102 375.6 317 66.6
arahy.Tifrunner.gnm1.ann1.IW4QJC Arachis hypogaea HOM05D005232 ORTHO05D006389 4.6e-102 375.2 323 65.6
arahy.Tifrunner.gnm1.ann1.JBBQ4L Arachis hypogaea HOM05D005232 ORTHO05D006389 4.6e-102 375.2 323 65.6
Dinv28407 Davidia involucrata HOM05D005232 ORTHO05D006389 7.9e-102 374.4 257 75.9
FAN26G0882 Fragaria x ananassa HOM05D005232 ORTHO05D006389 1.0e-101 374.0 317 66.2
Peaxi162Scf00858g00214 Petunia axillaris HOM05D005232 ORTHO05D006389 1.0e-101 374.0 314 66.6
PGSC0003DMG402023336 Solanum tuberosum HOM05D005232 ORTHO05D006389 1.0e-101 374.0 311 67.2
TPR.G26976 Trifolium pratense HOM05D005232 ORTHO05D006389 1.8e-101 373.2 320 66.2
Hund04775 Selenicereus undatus HOM05D005232 ORTHO05D006389 3.0e-101 372.5 320 65.9
MD07G1276200 Malus domestica HOM05D005232 ORTHO05D006389 3.9e-101 372.1 318 65.7
FAN28G2294 Fragaria x ananassa HOM05D005232 ORTHO05D006389 5.1e-101 371.7 317 66.2
PGSC0003DMG401023336 Solanum tuberosum HOM05D005232 ORTHO05D006389 7.4e-100 367.9 311 66.6
Ah.07g201890 Amaranthus hybridus HOM05D005232 ORTHO05D006389 2.8e-99 365.9 346 59.2
Lj5g0027810 Lotus japonicus HOM05D005232 ORTHO05D006389 3.7e-99 365.5 322 64.9
Hma1.2p1_2038F.1_g312080 Hydrangea macrophylla HOM05D005232 ORTHO05D006389 1.1e-98 364.0 316 64.9
Sopen05g034600 Solanum pennellii HOM05D005232 ORTHO05D006389 1.1e-98 364.0 311 66.2
Medtr1g100210 Medicago truncatula HOM05D005232 ORTHO05D006389 1.4e-98 363.6 319 64.6
AUR62031391 Chenopodium quinoa HOM05D005232 ORTHO05D006389 4.1e-98 362.1 317 62.5
THA.LOC104811969 Tarenaya hassleriana HOM05D005232 ORTHO05D006389 4.1e-98 362.1 319 64.6
Sed0005714 Sechium edule HOM05D005232 ORTHO05D006389 1.2e-97 360.5 312 65.1
Psat6g193720 Pisum sativum HOM05D005232 ORTHO05D006389 1.5e-97 360.1 320 64.1
DCAR_006428 Daucus carota HOM05D005232 ORTHO05D006389 2.6e-97 359.4 322 64.6
Phvul.007G073300 Phaseolus vulgaris HOM05D005232 ORTHO05D006389 4.5e-97 358.6 322 63.4
TPR.G22241 Trifolium pratense HOM05D005232 ORTHO05D006389 7.7e-97 357.8 315 63.8
Aqoxy7G00280 Aquilegia oxysepala HOM05D005232 ORTHO05D006389 1.3e-96 357.1 324 62.3
VMungo0720G1404 Vigna mungo HOM05D005232 ORTHO05D006389 1.7e-96 356.7 322 63.4
CDE05G3165 Ceratophyllum demersum HOM05D005232 ORTHO05D006389 3.2e-95 352.4 299 65.9
PSO170G2956 Papaver somniferum HOM05D005232 ORTHO05D006389 5.5e-95 351.7 316 62.7
PSO528G0151 Papaver somniferum HOM05D005232 ORTHO05D006389 1.6e-94 350.1 316 62.0
CDE11G0704 Ceratophyllum demersum HOM05D005232 ORTHO05D006389 2.7e-94 349.4 314 62.7
CAN.G694.94 Capsicum annuum HOM05D005232 ORTHO05D006389 3.6e-94 349.0 314 62.4
CARHR260960 Cardamine hirsuta HOM05D005232 ORTHO05D006389 3.6e-94 349.0 318 63.8
AL6G43680 Arabidopsis lyrata HOM05D005232 ORTHO05D006389 6.1e-94 348.2 319 63.6
Sp6g07330 Schrenkiella parvula HOM05D005232 ORTHO05D006389 1.4e-93 347.1 325 62.5
A09p28930 Brassica napus HOM05D005232 ORTHO05D006389 2.3e-93 346.3 325 62.5
BraA09t38457Z Brassica rapa HOM05D005232 ORTHO05D006389 2.3e-93 346.3 325 62.5
AT4G09980 Arabidopsis thaliana HOM05D005232 ORTHO05D006389 3.0e-93 345.9 316 63.9
EL10Ac3g05588 Beta vulgaris HOM05D005232 ORTHO05D006389 1.5e-92 343.6 308 62.3
Os10g0447600 Oryza sativa ssp. japonica HOM05D005232 ORTHO05D006389 9.7e-92 340.9 314 60.5
Sc20g0006810 Simmondsia chinensis HOM05D005232 ORTHO05D006389 6.3e-91 338.2 269 68.4
Thhalv10028402m.g Eutrema salsugineum HOM05D005232 ORTHO05D006389 8.2e-91 337.8 322 61.8
Migut.F01728 Erythranthe guttata HOM05D005232 ORTHO05D006389 1.8e-90 336.7 323 60.1
BcaB01g01438 Brassica carinata HOM05D005232 ORTHO05D006389 1.5e-89 333.6 319 62.4
HPP92_018498 Vanilla planifolia HOM05D005232 ORTHO05D006389 4.5e-89 332.0 255 68.2
Lalb_Chr21g0305171 Lupinus albus HOM05D005232 ORTHO05D006389 1.3e-88 330.5 249 71.1
Carub.0006s2852 Capsella rubella HOM05D005232 ORTHO05D006389 1.7e-88 330.1 319 62.1
Os01g0267100 Oryza sativa ssp. japonica HOM05D005232 ORTHO05D006389 3.8e-88 328.9 319 58.9
Hund11728 Selenicereus undatus HOM05D005232 ORTHO05D006389 9.4e-87 324.3 325 59.4
Os03g0147700 Oryza sativa ssp. japonica HOM05D005232 ORTHO05D006389 1.2e-86 323.9 322 58.7
Aa31LG9G12010 Aethionema arabicum HOM05D005232 ORTHO05D006389 3.6e-86 322.4 322 59.6
BcaC04g21005 Brassica carinata HOM05D005232 ORTHO05D006389 6.1e-86 321.6 324 59.3
C09p36730 Brassica napus HOM05D005232 ORTHO05D006389 6.1e-86 321.6 324 59.3
BolC9t56504H Brassica oleracea HOM05D005232 ORTHO05D006389 6.1e-86 321.6 324 59.3
Cpa.g.sc42.153 Carica papaya HOM05D005232 ORTHO05D006389 3.9e-85 318.9 237 70.9
ATR0618G373 Amborella trichopoda HOM05D005232 ORTHO05D006389 1.5e-79 300.4 305 57.4
Zm00001eb003840 Zea mays HOM05D005232 ORTHO05D006389 3.2e-79 299.3 317 56.8
SEGI_26780 Sequoiadendron giganteum HOM05D005232 ORTHO05D006389 1.4e-77 293.9 274 61.7
AUR62021146 Chenopodium quinoa HOM05D005232 ORTHO05D006389 2.5e-71 273.1 310 52.6
Pp3c5_5900 Physcomitrium patens HOM05D005232 ORTHO05D006389 5.4e-66 255.4 260 53.5
Mapoly0005s0162 Marchantia polymorpha HOM05D005232 ORTHO05D006389 3.2e-63 246.1 199 60.3
AagrBONN_evm.TU.Sc2ySwM_368.2345 Anthoceros agrestis HOM05D005232 ORTHO05D006389 3.4e-60 236.1 282 48.9
Pp3c6_26980 Physcomitrium patens HOM05D005232 ORTHO05D006389 1.8e-58 230.3 332 45.5
unitig_736.g22333 Utricularia gibba HOM05D005232 ORTHO05D006389 4.6e-49 199.1 121 78.5
Solyc05g056210.4 Solanum lycopersicum HOM05D005232 ORTHO05D006389 6.6e-48 195.3 211 59.2
Cre01.g050600 Chlamydomonas reinhardtii HOM05D005232 ORTHO05D006389 2.9e-43 179.9 154 56.5
CBR_g46623 Chara braunii HOM05D005232 ORTHO05D006389 2.3e-40 170.2 154 55.2
SEGI_30084 Sequoiadendron giganteum HOM05D005232 ORTHO05D006389 4.1e-34 149.4 216 43.1
Nitab4.5_0000582g0120 Nicotiana tabacum HOM05D005232 ORTHO05D006389 5.6e-15 85.9 62 69.4
Nitab4.5_0009827g0020 Nicotiana tabacum HOM05D005232 ORTHO05D006389 5.6e-15 85.9 62 69.4


User provided reference genes

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