Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0368381 Helianthus annuus HOM05D004941 ORTHO05D005624 3.0e-50 201.4 96 100.0
HanXRQChr12g0368351 Helianthus annuus HOM05D004941 ORTHO05D005624 2.4e-47 191.8 96 94.8
HanXRQChr11g0342701 Helianthus annuus HOM05D004941 ORTHO05D005624 9.2e-39 163.3 88 88.6
Lsat_1_v5_gn_2_43301 Lactuca sativa HOM05D004941 ORTHO05D005624 1.8e-34 149.1 88 79.5
ECA238G2545 Erigeron canadensis HOM05D004941 ORTHO05D005624 2.3e-34 148.7 88 79.5
HanXRQChr14g0435051 Helianthus annuus HOM05D004941 ORTHO05D005624 6.8e-34 147.1 88 79.5
Hund25548 Selenicereus undatus HOM05D004941 ORTHO05D005624 2.2e-32 142.1 89 77.5
SGA_v2.0_scaffold57G20152 Striga asiatica HOM05D004941 ORTHO05D005624 2.9e-32 141.7 89 76.4
RcHm_v2.0_Chr4g0396981 Rosa chinensis HOM05D004941 ORTHO05D005624 3.7e-32 141.4 89 76.4
SGA_v2.0_scaffold155G37216 Striga asiatica HOM05D004941 ORTHO05D005624 3.7e-32 141.4 89 75.3
VMungo0720G0486 Vigna mungo HOM05D004941 ORTHO05D005624 3.7e-32 141.4 89 79.8
Manes.03G152200 Manihot esculenta HOM05D004941 ORTHO05D005624 4.9e-32 141.0 89 76.4
Sabra01G0036700 Salix brachista HOM05D004941 ORTHO05D005624 4.9e-32 141.0 89 77.5
Actinidia35949 Actinidia chinensis HOM05D004941 ORTHO05D005624 6.4e-32 140.6 89 76.4
FvH4_4g05880 Fragaria vesca HOM05D004941 ORTHO05D005624 8.3e-32 140.2 89 75.3
FAN12G1018 Fragaria x ananassa HOM05D004941 ORTHO05D005624 8.3e-32 140.2 89 75.3
FAN17G1669 Fragaria x ananassa HOM05D004941 ORTHO05D005624 8.3e-32 140.2 89 75.3
FAN22G1917 Fragaria x ananassa HOM05D004941 ORTHO05D005624 8.3e-32 140.2 89 75.3
Prupe.1G061100 Prunus persica HOM05D004941 ORTHO05D005624 8.3e-32 140.2 89 75.3
Ah.12g061340 Amaranthus hybridus HOM05D004941 ORTHO05D005624 1.1e-31 139.8 89 76.4
CSS0021875 Camellia sinensis var. sinensis HOM05D004941 ORTHO05D005624 1.1e-31 139.8 89 75.3
CANSAT78G1419 Cannabis sativa HOM05D004941 ORTHO05D005624 1.1e-31 139.8 89 75.3
Ciclev10005408m.g Citrus clementina HOM05D004941 ORTHO05D005624 1.1e-31 139.8 89 74.2
MELO3C006336.2 Cucumis melo HOM05D004941 ORTHO05D005624 1.1e-31 139.8 89 75.3
CsaV3_3G011260 Cucumis sativus L. HOM05D004941 ORTHO05D005624 1.1e-31 139.8 89 75.3
Dinv38278 Davidia involucrata HOM05D004941 ORTHO05D005624 1.1e-31 139.8 89 75.3
arahy.Tifrunner.gnm1.ann1.4W8SKF Arachis hypogaea HOM05D004941 ORTHO05D005624 1.4e-31 139.4 89 75.3
arahy.Tifrunner.gnm1.ann1.9BGX48 Arachis hypogaea HOM05D004941 ORTHO05D005624 1.4e-31 139.4 89 75.3
PGR083G0368 Punica granatum HOM05D004941 ORTHO05D005624 1.4e-31 139.4 89 75.3
TWI73G0643 Tripterygium wilfordii HOM05D004941 ORTHO05D005624 1.4e-31 139.4 89 76.4
MSTRG.9834 Avicennia marina HOM05D004941 ORTHO05D005624 1.9e-31 139.0 92 71.7
Lj6C612G1 Lonicera japonica HOM05D004941 ORTHO05D005624 1.9e-31 139.0 88 76.1
Oeu022332.1 Olea europaea HOM05D004941 ORTHO05D005624 1.9e-31 139.0 89 75.3
Actinidia34635 Actinidia chinensis HOM05D004941 ORTHO05D005624 2.4e-31 138.7 89 75.3
Cpa.g.sc59.94 Carica papaya HOM05D004941 ORTHO05D005624 2.4e-31 138.7 89 75.3
Nn1g03138 Nelumbo nucifera HOM05D004941 ORTHO05D005624 2.4e-31 138.7 89 74.2
Sed0000115 Sechium edule HOM05D004941 ORTHO05D005624 2.4e-31 138.7 89 74.2
TWI09G1152 Tripterygium wilfordii HOM05D004941 ORTHO05D005624 2.4e-31 138.7 89 75.3
CSS0034559 Camellia sinensis var. sinensis HOM05D004941 ORTHO05D005624 3.2e-31 138.3 88 76.1
Eucgr.H00092 Eucalyptus grandis HOM05D004941 ORTHO05D005624 3.2e-31 138.3 89 73.0
MSTRG.4206 Avicennia marina HOM05D004941 ORTHO05D005624 4.1e-31 137.9 89 73.0
FAN07G0685 Fragaria x ananassa HOM05D004941 ORTHO05D005624 4.1e-31 137.9 89 74.2
PGR142G1301 Punica granatum HOM05D004941 ORTHO05D005624 4.1e-31 137.9 89 73.0
TAR365G1102 Trochodendron aralioides HOM05D004941 ORTHO05D005624 4.1e-31 137.9 89 74.2
CiPaw.01G126200 Carya illinoinensis HOM05D004941 ORTHO05D005624 5.4e-31 137.5 89 75.3
AUR62020272 Chenopodium quinoa HOM05D004941 ORTHO05D005624 5.4e-31 137.5 89 75.3
AUR62037730 Chenopodium quinoa HOM05D004941 ORTHO05D005624 5.4e-31 137.5 89 75.3
MD16G1235900 Malus domestica HOM05D004941 ORTHO05D005624 5.4e-31 137.5 89 73.0
Phvul.007G236700 Phaseolus vulgaris HOM05D004941 ORTHO05D005624 5.4e-31 137.5 89 77.5
GSVIVG01029054001 Vitis vinifera HOM05D004941 ORTHO05D005624 5.4e-31 137.5 89 75.3
Manes.15G050400 Manihot esculenta HOM05D004941 ORTHO05D005624 7.0e-31 137.1 89 75.3
Solyc12g098150.2 Solanum lycopersicum HOM05D004941 ORTHO05D005624 7.0e-31 137.1 89 74.2
Sopen12g032980 Solanum pennellii HOM05D004941 ORTHO05D005624 7.0e-31 137.1 89 74.2
Medtr1g047250 Medicago truncatula HOM05D004941 ORTHO05D005624 9.2e-31 136.7 89 75.3
ClCG05G003570 Citrullus lanatus HOM05D004941 ORTHO05D005624 1.2e-30 136.3 89 71.9
Dinv29557 Davidia involucrata HOM05D004941 ORTHO05D005624 1.2e-30 136.3 89 73.0
Lalb_Chr01g0010801 Lupinus albus HOM05D004941 ORTHO05D005624 1.2e-30 136.3 89 74.2
Potri.001G052100 Populus trichocarpa HOM05D004941 ORTHO05D005624 1.2e-30 136.3 89 75.3
PGSC0003DMG400016870 Solanum tuberosum HOM05D004941 ORTHO05D005624 1.2e-30 136.3 89 74.2
THA.LOC104826109 Tarenaya hassleriana HOM05D004941 ORTHO05D005624 1.2e-30 136.3 89 73.0
TAR636G2508 Trochodendron aralioides HOM05D004941 ORTHO05D005624 1.2e-30 136.3 89 71.9
Atru.chr4.1786 Acer truncatum HOM05D004941 ORTHO05D005624 1.6e-30 136.0 89 74.2
ATR0787G155 Amborella trichopoda HOM05D004941 ORTHO05D005624 1.6e-30 136.0 89 73.0
Glyma.20G077200 Glycine max HOM05D004941 ORTHO05D005624 1.6e-30 136.0 89 75.3
Glyma.10G124800 Glycine max HOM05D004941 ORTHO05D005624 2.0e-30 135.6 89 75.3
SalBow2G0113 Salvia bowleyana HOM05D004941 ORTHO05D005624 2.0e-30 135.6 89 73.0
unitig_748.g7345 Utricularia gibba HOM05D004941 ORTHO05D005624 2.0e-30 135.6 88 76.1
CDE06G1864 Ceratophyllum demersum HOM05D004941 ORTHO05D005624 2.7e-30 135.2 89 73.0
MBI07_g19562_MAGBIO Magnolia biondii HOM05D004941 ORTHO05D005624 2.7e-30 135.2 89 75.3
PSO170G0276 Papaver somniferum HOM05D004941 ORTHO05D005624 2.7e-30 135.2 89 74.2
PSO764G0052 Papaver somniferum HOM05D004941 ORTHO05D005624 2.7e-30 135.2 89 74.2
TAR362G1130 Trochodendron aralioides HOM05D004941 ORTHO05D005624 3.5e-30 134.8 89 75.3
Aa31LG1G20190 Aethionema arabicum HOM05D004941 ORTHO05D005624 4.6e-30 134.4 89 74.2
CAN.G706.24 Capsicum annuum HOM05D004941 ORTHO05D005624 4.6e-30 134.4 89 73.0
Gohir.A09G052900 Gossypium hirsutum HOM05D004941 ORTHO05D005624 4.6e-30 134.4 89 71.9
Gohir.D09G052984 Gossypium hirsutum HOM05D004941 ORTHO05D005624 4.6e-30 134.4 89 71.9
Gorai.006G055700 Gossypium raimondii HOM05D004941 ORTHO05D005624 4.6e-30 134.4 89 71.9
Nn3g19897 Nelumbo nucifera HOM05D004941 ORTHO05D005624 4.6e-30 134.4 89 71.9
A10p03120 Brassica napus HOM05D004941 ORTHO05D005624 6.0e-30 134.0 89 73.0
C05p02890 Brassica napus HOM05D004941 ORTHO05D005624 6.0e-30 134.0 89 73.0
BolC5t29070H Brassica oleracea HOM05D004941 ORTHO05D005624 6.0e-30 134.0 89 73.0
BraA10t42585Z Brassica rapa HOM05D004941 ORTHO05D005624 6.0e-30 134.0 89 73.0
CiPaw.02G068500 Carya illinoinensis HOM05D004941 ORTHO05D005624 6.0e-30 134.0 89 73.0
Duzib151G0226 Durio zibethinus HOM05D004941 ORTHO05D005624 6.0e-30 134.0 89 71.9
Lsat_1_v5_gn_1_72461 Lactuca sativa HOM05D004941 ORTHO05D005624 6.0e-30 134.0 108 63.0
Oeu006717.1 Olea europaea HOM05D004941 ORTHO05D005624 6.0e-30 134.0 88 72.7
Cfa021915 Carpinus fangiana HOM05D004941 ORTHO05D005624 7.8e-30 133.7 89 74.2
COL.COLO4_34078 Corchorus olitorius HOM05D004941 ORTHO05D005624 7.8e-30 133.7 89 71.9
Lalb_Chr03g0036651 Lupinus albus HOM05D004941 ORTHO05D005624 7.8e-30 133.7 89 73.0
Peaxi162Scf00817g00217 Petunia axillaris HOM05D004941 ORTHO05D005624 7.8e-30 133.7 89 73.0
DCAR_024319 Daucus carota HOM05D004941 ORTHO05D005624 1.0e-29 133.3 89 73.0
THA.LOC104801049 Tarenaya hassleriana HOM05D004941 ORTHO05D005624 1.0e-29 133.3 89 71.9
Aqoxy2G03791 Aquilegia oxysepala HOM05D004941 ORTHO05D005624 1.3e-29 132.9 89 71.9
EL10Ac2g02402 Beta vulgaris HOM05D004941 ORTHO05D005624 1.3e-29 132.9 89 73.0
BcaC07g36888 Brassica carinata HOM05D004941 ORTHO05D005624 1.3e-29 132.9 89 71.9
A08p36750 Brassica napus HOM05D004941 ORTHO05D005624 1.3e-29 132.9 89 71.9
C08p01390 Brassica napus HOM05D004941 ORTHO05D005624 1.3e-29 132.9 89 71.9
BolC8t46947H Brassica oleracea HOM05D004941 ORTHO05D005624 1.3e-29 132.9 89 71.9
BraA08t35577Z Brassica rapa HOM05D004941 ORTHO05D005624 1.3e-29 132.9 89 71.9
Carub.0001s0394 Capsella rubella HOM05D004941 ORTHO05D005624 1.3e-29 132.9 89 71.9
CARHR004070 Cardamine hirsuta HOM05D004941 ORTHO05D005624 1.3e-29 132.9 89 71.9
Thhalv10008181m.g Eutrema salsugineum HOM05D004941 ORTHO05D005624 1.3e-29 132.9 89 71.9
Sp1g03530 Schrenkiella parvula HOM05D004941 ORTHO05D005624 1.3e-29 132.9 89 71.9
TPR.G10093 Trifolium pratense HOM05D004941 ORTHO05D005624 1.3e-29 132.9 89 71.9
Migut.G00623 Erythranthe guttata HOM05D004941 ORTHO05D005624 1.7e-29 132.5 89 71.9
Lj3A584G54 Lonicera japonica HOM05D004941 ORTHO05D005624 1.7e-29 132.5 89 71.9
Nitab4.5_0009699g0010 Nicotiana tabacum HOM05D004941 ORTHO05D005624 1.7e-29 132.5 89 71.9
Thecc.04G211200 Theobroma cacao HOM05D004941 ORTHO05D005624 1.7e-29 132.5 89 70.8
Nitab4.5_0005337g0010 Nicotiana tabacum HOM05D004941 ORTHO05D005624 2.3e-29 132.1 88 72.7
AL1G14400 Arabidopsis lyrata HOM05D004941 ORTHO05D005624 3.0e-29 131.7 89 70.8
AT1G04690 Arabidopsis thaliana HOM05D004941 ORTHO05D005624 3.0e-29 131.7 89 70.8
BcaB03g13476 Brassica carinata HOM05D004941 ORTHO05D005624 3.0e-29 131.7 89 70.8
Duzib212G1033 Durio zibethinus HOM05D004941 ORTHO05D005624 3.0e-29 131.7 89 70.8
CiPaw.01G126300 Carya illinoinensis HOM05D004941 ORTHO05D005624 5.0e-29 131.0 89 73.0
Duzib212G0897 Durio zibethinus HOM05D004941 ORTHO05D005624 1.1e-28 129.8 89 69.7
Lj6g0004918 Lotus japonicus HOM05D004941 ORTHO05D005624 1.1e-28 129.8 89 70.8
Psat6g047760 Pisum sativum HOM05D004941 ORTHO05D005624 1.1e-28 129.8 89 70.8
QL06p023335 Quercus lobata HOM05D004941 ORTHO05D005624 1.5e-28 129.4 89 69.7
HPP92_020758 Vanilla planifolia HOM05D004941 ORTHO05D005624 1.9e-28 129.0 89 69.7
SEGI_23376 Sequoiadendron giganteum HOM05D004941 ORTHO05D005624 2.5e-28 128.6 89 69.7
Cc03_g07250 Coffea canephora HOM05D004941 ORTHO05D005624 3.3e-28 128.3 90 68.9
vmacro15503 Vaccinium macrocarpon HOM05D004941 ORTHO05D005624 4.3e-28 127.9 114 58.8
DCAR_027374 Daucus carota HOM05D004941 ORTHO05D005624 5.6e-28 127.5 89 68.5
SMO119G0453 Selaginella moellendorffii HOM05D004941 ORTHO05D005624 9.5e-28 126.7 89 67.4
MD13G1231200 Malus domestica HOM05D004941 ORTHO05D005624 2.8e-27 125.2 89 66.3
THA.LOC104816018 Tarenaya hassleriana HOM05D004941 ORTHO05D005624 4.7e-27 124.4 89 67.4
Os02g0817500 Oryza sativa ssp. japonica HOM05D004941 ORTHO05D005624 4.0e-26 121.3 89 65.2
Mapoly0072s0010 Marchantia polymorpha HOM05D004941 ORTHO05D005624 5.2e-26 120.9 89 64.0
Zm00001eb258940 Zea mays HOM05D004941 ORTHO05D005624 1.2e-25 119.8 89 64.0
Zm00001eb191380 Zea mays HOM05D004941 ORTHO05D005624 3.4e-25 118.2 89 62.9
Haze_11557 Corylus avellana HOM05D004941 ORTHO05D005624 7.5e-25 117.1 78 74.4
Pp3c15_3990 Physcomitrium patens HOM05D004941 ORTHO05D005624 3.5e-22 108.2 89 57.3
Oeu001462.1 Olea europaea HOM05D004941 ORTHO05D005624 1.7e-21 105.9 83 61.4
Pp3c9_7970 Physcomitrium patens HOM05D004941 ORTHO05D005624 2.3e-21 105.5 89 56.2
CSS0035383 Camellia sinensis var. sinensis HOM05D004941 ORTHO05D005624 1.2e-19 99.8 110 50.9
CBR_g12335 Chara braunii HOM05D004941 ORTHO05D005624 4.0e-18 94.7 89 52.8
unitig_32.g11683 Utricularia gibba HOM05D004941 ORTHO05D005624 1.4e-15 86.3 112 45.5
Sc04g0003020 Simmondsia chinensis HOM05D004941 ORTHO05D005624 6.0e-14 80.9 49 77.6
Hma1.2p1_0903F.1_g235180 Hydrangea macrophylla HOM05D004941 ORTHO05D005624 1.3e-13 79.7 48 77.1
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 3.0e-13 78.6 64 65.6
Cpa.g.c36552 Carica papaya HOM05D004941 ORTHO05D005624 1.5e-09 66.2 40 77.5
COL.COLO4_34077 Corchorus olitorius HOM05D004941 ORTHO05D005624 7.6e-09 63.9 40 72.5
Cre04.g217916 Chlamydomonas reinhardtii HOM05D000352 ORTHO05D005624 9.9e-09 63.5 95 41.1
Ca_28893_v3 Cicer arietinum L. HOM05D000352 ORTHO05D005624 3.5e-06 55.1 71 40.8


User provided reference genes

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