Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0368091 Helianthus annuus HOM05D003456 ORTHO05D004082 5.0e-41 170.6 84 100.0
ECA233G4183 Erigeron canadensis HOM05D003456 ORTHO05D004082 4.6e-34 147.5 77 93.5
HanXRQChr08g0217241 Helianthus annuus HOM05D003456 ORTHO05D004082 1.0e-33 146.4 77 93.5
Cpa.g.sc56.14 Carica papaya HOM05D003456 ORTHO05D004082 8.6e-33 143.3 75 89.3
CiPaw.13G039000 Carya illinoinensis HOM05D003456 ORTHO05D004082 8.6e-33 143.3 75 90.7
PGR031G3484 Punica granatum HOM05D003456 ORTHO05D004082 1.1e-32 142.9 82 85.4
PGR044G1450 Punica granatum HOM05D003456 ORTHO05D004082 1.5e-32 142.5 75 92.0
Actinidia34723 Actinidia chinensis HOM05D003456 ORTHO05D004082 2.5e-32 141.7 74 93.2
Lsat_1_v5_gn_8_24141 Lactuca sativa HOM05D003456 ORTHO05D004082 5.6e-32 140.6 72 93.1
Sabra08G0013700 Salix brachista HOM05D003456 ORTHO05D004082 5.6e-32 140.6 75 86.7
Sc09g0005350 Simmondsia chinensis HOM05D003456 ORTHO05D004082 5.6e-32 140.6 73 91.8
Atru.chr8.1550 Acer truncatum HOM05D003456 ORTHO05D004082 7.3e-32 140.2 71 93.0
MSTRG.27572 Avicennia marina HOM05D003456 ORTHO05D004082 7.3e-32 140.2 76 88.2
Cfa016601 Carpinus fangiana HOM05D003456 ORTHO05D004082 7.3e-32 140.2 73 90.4
Haze_19603 Corylus avellana HOM05D003456 ORTHO05D004082 7.3e-32 140.2 73 90.4
AUR62013762 Chenopodium quinoa HOM05D003456 ORTHO05D004082 9.5e-32 139.8 73 91.8
AUR62023392 Chenopodium quinoa HOM05D003456 ORTHO05D004082 9.5e-32 139.8 73 91.8
EL10Ac1g00743 Beta vulgaris HOM05D003456 ORTHO05D004082 1.2e-31 139.4 73 90.4
SalBow6G0063 Salvia bowleyana HOM05D003456 ORTHO05D004082 1.2e-31 139.4 77 85.7
SGA_v2.0_scaffold62G21335 Striga asiatica HOM05D003456 ORTHO05D004082 1.2e-31 139.4 76 86.8
SGA_v2.0_scaffold85G26612 Striga asiatica HOM05D003456 ORTHO05D004082 1.2e-31 139.4 76 86.8
Lalb_Chr25g0288351 Lupinus albus HOM05D003456 ORTHO05D004082 1.6e-31 139.0 72 91.7
Potri.010G238800 Populus trichocarpa HOM05D003456 ORTHO05D004082 1.6e-31 139.0 75 88.0
QL07p039199 Quercus lobata HOM05D003456 ORTHO05D004082 1.6e-31 139.0 71 91.5
TAR636G2922 Trochodendron aralioides HOM05D003456 ORTHO05D004082 1.6e-31 139.0 71 94.4
Ciclev10017146m.g Citrus clementina HOM05D003456 ORTHO05D004082 2.1e-31 138.7 73 89.0
Thecc.09G106900 Theobroma cacao HOM05D003456 ORTHO05D004082 2.1e-31 138.7 75 90.7
CANSAT56G3878 Cannabis sativa HOM05D003456 ORTHO05D004082 2.8e-31 138.3 75 86.7
Ca_08885_v3 Cicer arietinum L. HOM05D003456 ORTHO05D004082 3.6e-31 137.9 73 89.0
Migut.F01607 Erythranthe guttata HOM05D003456 ORTHO05D004082 3.6e-31 137.9 76 84.2
Potri.008G020400 Populus trichocarpa HOM05D003456 ORTHO05D004082 3.6e-31 137.9 75 85.3
Aqoxy3G02826 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 4.7e-31 137.5 77 84.4
CANSAT56G1853 Cannabis sativa HOM05D003456 ORTHO05D004082 4.7e-31 137.5 75 85.3
Eucgr.J00259 Eucalyptus grandis HOM05D003456 ORTHO05D004082 4.7e-31 137.5 73 86.3
Gohir.D09G011800 Gossypium hirsutum HOM05D003456 ORTHO05D004082 4.7e-31 137.5 73 89.0
Gorai.006G013800 Gossypium raimondii HOM05D003456 ORTHO05D004082 4.7e-31 137.5 73 89.0
Sabra10G0187000 Salix brachista HOM05D003456 ORTHO05D004082 4.7e-31 137.5 75 84.0
Atru.chr12.1024 Acer truncatum HOM05D003456 ORTHO05D004082 6.2e-31 137.1 73 87.7
Aqoxy1G03742 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 6.2e-31 137.1 77 84.4
Cpa.g.sc5.27 Carica papaya HOM05D003456 ORTHO05D004082 6.2e-31 137.1 75 85.3
Gohir.A04G063300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 6.2e-31 137.1 69 92.8
Gohir.D04G100300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 6.2e-31 137.1 69 92.8
Gorai.009G403300 Gossypium raimondii HOM05D003456 ORTHO05D004082 6.2e-31 137.1 69 92.8
Lalb_Chr20g0111761 Lupinus albus HOM05D003456 ORTHO05D004082 6.2e-31 137.1 72 87.5
Cc02_g09640 Coffea canephora HOM05D003456 ORTHO05D004082 8.0e-31 136.7 76 85.5
FAN09G3852 Fragaria x ananassa HOM05D003456 ORTHO05D004082 8.0e-31 136.7 71 91.5
Oeu026593.1 Olea europaea HOM05D003456 ORTHO05D004082 8.0e-31 136.7 76 85.5
FvH4_6g18590 Fragaria vesca HOM05D003456 ORTHO05D004082 1.1e-30 136.3 71 90.1
FAN05G2371 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.1e-30 136.3 71 90.1
FAN14G1410 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.1e-30 136.3 71 90.1
MD12G1035500 Malus domestica HOM05D003456 ORTHO05D004082 1.1e-30 136.3 71 87.3
Psat4g110960 Pisum sativum HOM05D003456 ORTHO05D004082 1.1e-30 136.3 73 87.7
QL04p044862 Quercus lobata HOM05D003456 ORTHO05D004082 1.1e-30 136.3 75 82.7
Rhsim03G0097900 Rhododendron simsii HOM05D003456 ORTHO05D004082 1.1e-30 136.3 76 85.5
RcHm_v2.0_Chr3g0473171 Rosa chinensis HOM05D003456 ORTHO05D004082 1.1e-30 136.3 71 90.1
Sc20g0001150 Simmondsia chinensis HOM05D003456 ORTHO05D004082 1.1e-30 136.3 77 83.1
THA.LOC104804331 Tarenaya hassleriana HOM05D003456 ORTHO05D004082 1.1e-30 136.3 75 84.0
Dinv21215 Davidia involucrata HOM05D003456 ORTHO05D004082 1.4e-30 136.0 74 86.5
Duzib128G1248 Durio zibethinus HOM05D003456 ORTHO05D004082 1.4e-30 136.0 77 85.7
FAN05G5536 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.4e-30 136.0 71 88.7
Oeu054399.2 Olea europaea HOM05D003456 ORTHO05D004082 1.4e-30 136.0 72 88.9
TAR633G0109 Trochodendron aralioides HOM05D003456 ORTHO05D004082 1.4e-30 136.0 77 84.4
COL.COLO4_29759 Corchorus olitorius HOM05D003456 ORTHO05D004082 1.8e-30 135.6 75 89.3
Lj1g0011692 Lotus japonicus HOM05D003456 ORTHO05D004082 1.8e-30 135.6 71 88.7
GSVIVG01033834001 Vitis vinifera HOM05D003456 ORTHO05D004082 1.8e-30 135.6 71 90.1
Aqoxy2G01205 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 2.3e-30 135.2 75 84.0
MELO3C012350.2 Cucumis melo HOM05D003456 ORTHO05D004082 2.3e-30 135.2 71 90.1
Hma1.2p1_0232F.1_g097840 Hydrangea macrophylla HOM05D003456 ORTHO05D004082 2.3e-30 135.2 74 86.5
RcHm_v2.0_Chr6g0270521 Rosa chinensis HOM05D003456 ORTHO05D004082 2.3e-30 135.2 71 88.7
Solyc11g006920.2 Solanum lycopersicum HOM05D003456 ORTHO05D004082 2.3e-30 135.2 76 84.2
Sopen11g002830 Solanum pennellii HOM05D003456 ORTHO05D004082 2.3e-30 135.2 76 84.2
PGSC0003DMG400023972 Solanum tuberosum HOM05D003456 ORTHO05D004082 2.3e-30 135.2 76 84.2
unitig_0.g1020 Utricularia gibba HOM05D003456 ORTHO05D004082 2.3e-30 135.2 78 84.6
Glyma.03G195000 Glycine max HOM05D003456 ORTHO05D004082 3.1e-30 134.8 71 87.3
Ciclev10013682m.g Citrus clementina HOM05D003456 ORTHO05D004082 4.0e-30 134.4 73 86.3
Nitab4.5_0011538g0030 Nicotiana tabacum HOM05D003456 ORTHO05D004082 4.0e-30 134.4 76 82.9
SalBow6G0069 Salvia bowleyana HOM05D003456 ORTHO05D004082 4.0e-30 134.4 76 86.8
TWI53G1385 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 4.0e-30 134.4 66 93.9
MD14G1022300 Malus domestica HOM05D003456 ORTHO05D004082 5.2e-30 134.0 71 85.9
Sopen09g004180 Solanum pennellii HOM05D003456 ORTHO05D004082 5.2e-30 134.0 71 90.1
CSS0039541 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 6.8e-30 133.7 75 86.7
ClCG05G018420 Citrullus lanatus HOM05D003456 ORTHO05D004082 6.8e-30 133.7 71 88.7
ClCG05G021780 Citrullus lanatus HOM05D003456 ORTHO05D004082 6.8e-30 133.7 71 88.7
CsaV3_5G035380 Cucumis sativus L. HOM05D003456 ORTHO05D004082 6.8e-30 133.7 71 88.7
Gohir.A09G013133 Gossypium hirsutum HOM05D003456 ORTHO05D004082 6.8e-30 133.7 73 86.3
Phvul.001G189600 Phaseolus vulgaris HOM05D003456 ORTHO05D004082 6.8e-30 133.7 72 84.7
arahy.Tifrunner.gnm1.ann1.KEI5RC Arachis hypogaea HOM05D003456 ORTHO05D004082 8.9e-30 133.3 71 85.9
CiPaw.09G013300 Carya illinoinensis HOM05D003456 ORTHO05D004082 8.9e-30 133.3 68 92.6
Manes.09G055901 Manihot esculenta HOM05D003456 ORTHO05D004082 8.9e-30 133.3 73 86.3
Prupe.7G111000 Prunus persica HOM05D003456 ORTHO05D004082 8.9e-30 133.3 71 87.3
Rhsim09G0141900 Rhododendron simsii HOM05D003456 ORTHO05D004082 8.9e-30 133.3 76 86.8
Solyc09g009460.4 Solanum lycopersicum HOM05D003456 ORTHO05D004082 8.9e-30 133.3 70 91.4
vmacro10309 Vaccinium macrocarpon HOM05D003456 ORTHO05D004082 8.9e-30 133.3 81 81.5
Dinv09618 Davidia involucrata HOM05D003456 ORTHO05D004082 1.2e-29 132.9 76 82.9
FvH4_2g10490 Fragaria vesca HOM05D003456 ORTHO05D004082 1.2e-29 132.9 71 87.3
TWI74G0284 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 1.2e-29 132.9 69 87.0
arahy.Tifrunner.gnm1.ann1.C03M9B Arachis hypogaea HOM05D003456 ORTHO05D004082 1.5e-29 132.5 65 93.8
arahy.Tifrunner.gnm1.ann1.VF2KJZ Arachis hypogaea HOM05D003456 ORTHO05D004082 1.5e-29 132.5 65 93.8
Glyma.19G194700 Glycine max HOM05D003456 ORTHO05D004082 1.5e-29 132.5 71 85.9
BraA03t13724Z Brassica rapa HOM05D003456 ORTHO05D004082 2.0e-29 132.1 71 83.1
CAN.G397.10 Capsicum annuum HOM05D003456 ORTHO05D004082 2.0e-29 132.1 71 87.3
arahy.Tifrunner.gnm1.ann1.P2449T Arachis hypogaea HOM05D003456 ORTHO05D004082 2.6e-29 131.7 71 84.5
BcaB07g31755 Brassica carinata HOM05D003456 ORTHO05D004082 2.6e-29 131.7 74 79.7
A09p11090 Brassica napus HOM05D003456 ORTHO05D004082 2.6e-29 131.7 74 79.7
BraA09t36751Z Brassica rapa HOM05D003456 ORTHO05D004082 2.6e-29 131.7 74 79.7
Sed0026028 Sechium edule HOM05D003456 ORTHO05D004082 2.6e-29 131.7 71 87.3
FAN24G1424 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.4e-29 131.3 71 85.9
TPR.G9901 Trifolium pratense HOM05D003456 ORTHO05D004082 3.4e-29 131.3 70 88.6
BcaC01g02994 Brassica carinata HOM05D003456 ORTHO05D004082 4.4e-29 131.0 71 81.7
A03p45960 Brassica napus HOM05D003456 ORTHO05D004082 4.4e-29 131.0 71 81.7
C03p57360 Brassica napus HOM05D003456 ORTHO05D004082 4.4e-29 131.0 71 81.7
Medtr1g060070 Medicago truncatula HOM05D003456 ORTHO05D004082 4.4e-29 131.0 73 83.6
BcaB08g34660 Brassica carinata HOM05D003456 ORTHO05D004082 5.8e-29 130.6 73 79.5
Thhalv10022903m.g Eutrema salsugineum HOM05D003456 ORTHO05D004082 5.8e-29 130.6 73 79.5
Sp3g30040 Schrenkiella parvula HOM05D003456 ORTHO05D004082 7.5e-29 130.2 73 80.8
ATR0789G023 Amborella trichopoda HOM05D003456 ORTHO05D004082 9.8e-29 129.8 77 84.4
Migut.F00877 Erythranthe guttata HOM05D003456 ORTHO05D004082 9.8e-29 129.8 88 77.3
PSO170G1366 Papaver somniferum HOM05D003456 ORTHO05D004082 9.8e-29 129.8 71 83.1
PSO151G0153 Papaver somniferum HOM05D003456 ORTHO05D004082 1.3e-28 129.4 71 83.1
Thecc.05G088300 Theobroma cacao HOM05D003456 ORTHO05D004082 1.3e-28 129.4 79 83.5
AL3G49380 Arabidopsis lyrata HOM05D003456 ORTHO05D004082 1.7e-28 129.0 72 80.6
AT2G16710 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 1.7e-28 129.0 72 80.6
Carub.0001s3604 Capsella rubella HOM05D003456 ORTHO05D004082 1.7e-28 129.0 75 77.3
Carub.0003s3046 Capsella rubella HOM05D003456 ORTHO05D004082 1.7e-28 129.0 74 78.4
Aa31LG8G13940 Aethionema arabicum HOM05D003456 ORTHO05D004082 2.2e-28 128.6 70 80.0
CDE02G3384 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 2.2e-28 128.6 71 83.1
DCAR_020755 Daucus carota HOM05D003456 ORTHO05D004082 2.2e-28 128.6 70 84.3
PSO407G0116 Papaver somniferum HOM05D003456 ORTHO05D004082 2.2e-28 128.6 71 81.7
CARHR106940 Cardamine hirsuta HOM05D003456 ORTHO05D004082 2.9e-28 128.3 73 78.1
Os01g0105800 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 3.7e-28 127.9 65 87.7
PGR142G0161 Punica granatum HOM05D003456 ORTHO05D004082 4.9e-28 127.5 73 82.2
BolC3t18012H Brassica oleracea HOM05D003456 ORTHO05D004082 1.1e-27 126.3 68 82.4
Os12g0485500 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 1.1e-27 126.3 65 86.2
BcaC04g23009 Brassica carinata HOM05D003456 ORTHO05D004082 1.4e-27 125.9 72 79.2
C09p13080 Brassica napus HOM05D003456 ORTHO05D004082 1.4e-27 125.9 72 79.2
Peaxi162Scf00290g00816 Petunia axillaris HOM05D003456 ORTHO05D004082 1.4e-27 125.9 65 92.3
Zm00001eb126830 Zea mays HOM05D003456 ORTHO05D004082 1.4e-27 125.9 64 87.5
Zm00001eb334200 Zea mays HOM05D003456 ORTHO05D004082 4.1e-27 124.4 64 84.4
SEGI_09582 Sequoiadendron giganteum HOM05D003456 ORTHO05D004082 7.8e-26 120.2 62 85.5
PSO339G3466 Papaver somniferum HOM05D003456 ORTHO05D004082 1.7e-25 119.0 71 78.9
FAN02G4247 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.0e-25 118.2 107 59.8
Mapoly0089s0049 Marchantia polymorpha HOM05D003456 ORTHO05D004082 3.9e-25 117.9 63 77.8
Pp3c18_19580 Physcomitrium patens HOM05D003456 ORTHO05D004082 5.0e-25 117.5 63 77.8
PGSC0003DMG402002701 Solanum tuberosum HOM05D003456 ORTHO05D004082 5.0e-25 117.5 56 98.2
AagrBONN_evm.TU.Sc2ySwM_362.959 Anthoceros agrestis HOM05D003456 ORTHO05D004082 8.6e-25 116.7 63 79.4
CBR_g4764 Chara braunii HOM05D003456 ORTHO05D004082 2.5e-24 115.2 61 78.7
Nitab4.5_0005483g0040 Nicotiana tabacum HOM05D003456 ORTHO05D004082 3.6e-23 111.3 59 88.1
Gohir.D09G135500 Gossypium hirsutum HOM05D003456 ORTHO05D004082 4.7e-23 110.9 76 73.7
Gorai.006G155500 Gossypium raimondii HOM05D003456 ORTHO05D004082 4.7e-23 110.9 76 73.7
AT2G36260 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 8.1e-23 110.2 64 76.6
RcHm_v2.0_Chr7g0219151 Rosa chinensis HOM05D003456 ORTHO05D004082 4.0e-22 107.8 56 91.1
Cc00_g28380 Coffea canephora HOM05D003456 ORTHO05D004082 3.4e-21 104.8 53 92.5
Cc05_g02390 Coffea canephora HOM05D003456 ORTHO05D004082 3.4e-21 104.8 53 92.5
VMungo1383G3423 Vigna mungo HOM05D003456 ORTHO05D004082 4.4e-21 104.4 52 92.3
TPR.G4681 Trifolium pratense HOM05D003456 ORTHO05D004082 1.3e-20 102.8 63 77.8
Aa31LG5G21390 Aethionema arabicum HOM05D003456 ORTHO05D004082 2.9e-20 101.7 64 65.6
Nitab4.5_0001437g0010 Nicotiana tabacum HOM05D003456 ORTHO05D004082 2.9e-20 101.7 58 81.0
SMO147G0221 Selaginella moellendorffii HOM05D003456 ORTHO05D004082 8.3e-20 100.1 61 67.2
MCO14G517 Micromonas commoda HOM05D003456 ORTHO05D004082 1.9e-19 99.0 61 72.1
Oeu024811.2 Olea europaea HOM05D003456 ORTHO05D004082 1.2e-18 96.3 108 51.9
PGSC0003DMG400023988 Solanum tuberosum HOM05D003456 ORTHO05D004082 4.3e-16 87.8 51 78.4
Hund30565 Selenicereus undatus HOM05D003456 ORTHO05D004082 9.5e-16 86.7 48 87.5
Hund30410 Selenicereus undatus HOM05D003456 ORTHO05D004082 2.8e-15 85.1 39 97.4
QL07p038879 Quercus lobata HOM05D003456 ORTHO05D004082 3.6e-15 84.7 41 97.6
Psat6g013760 Pisum sativum HOM05D003456 ORTHO05D004082 8.1e-15 83.6 41 95.1
QL04p047329 Quercus lobata HOM05D003456 ORTHO05D001557 1.1e-14 83.2 45 86.7
Actinidia31104 Actinidia chinensis HOM05D003456 ORTHO05D004082 4.0e-14 81.3 42 92.9
Hund22272 Selenicereus undatus HOM05D003456 ORTHO05D004082 4.0e-14 81.3 41 92.7
Nn2g14150 Nelumbo nucifera HOM05D003456 ORTHO05D004082 8.9e-14 80.1 41 90.2
CAN.G645.14 Capsicum annuum HOM05D000043 ORTHO05D001371 1.5e-13 79.3 40 90.0
C03p57390 Brassica napus HOM05D003456 ORTHO05D004082 2.0e-13 79.0 51 72.5
BolC3t18015H Brassica oleracea HOM05D003456 ORTHO05D004082 2.0e-13 79.0 51 72.5
DCAR_009160 Daucus carota HOM05D003456 ORTHO05D004082 4.4e-13 77.8 41 82.9
Cre09.g400775 Chlamydomonas reinhardtii HOM05D003456 ORTHO05D004082 1.2e-10 69.7 48 64.6
Haze_26136 Corylus avellana HOM05D003456 ORTHO05D004082 1.2e-10 69.7 59 54.2
Haze_27704 Corylus avellana HOM05D003456 ORTHO05D004082 1.3e-09 66.2 59 47.5
CSS0000169 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 5.1e-09 64.3 46 71.7
Nn6g34911 Nelumbo nucifera HOM05D003456 ORTHO05D004082 2.5e-08 62.0 33 84.8
Cfa025191 Carpinus fangiana HOM05D003456 ORTHO05D124956 7.3e-08 60.5 49 51.0
Zm00001eb270460 Zea mays HOM05D002293 ORTHO05D006850 7.3e-08 60.5 63 42.9
RcHm_v2.0_Chr6g0245041 Rosa chinensis HOM05D003456 ORTHO05D004082 2.1e-07 58.9 52 57.7
Nitab4.5_0001725g0170 Nicotiana tabacum HOM05D003456 ORTHO05D004082 6.2e-07 57.4 32 78.1
Zm00001eb377130 Zea mays HOM05D002293 ORTHO05D006850 2.4e-06 55.5 63 39.7
Mapoly0063s0067 Marchantia polymorpha HOM05D002293 ORTHO05D006850 3.1e-06 55.1 64 37.5
AagrBONN_evm.TU.Sc2ySwM_228.4176 Anthoceros agrestis HOM05D005004 ORTHO05D006097 9.0e-06 53.5 59 39.0
Haze_26850 Corylus avellana HOM05D003456 ORTHO05D004082 9.0e-06 53.5 49 44.9


User provided reference genes

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