Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 4.4e-144 514.6 263 100.0
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 2.3e-31 140.2 76 96.1
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 2.3e-31 140.2 76 96.1
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 7.9e-16 88.6 81 65.4
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 5.8e-11 72.4 36 97.2
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.1e-09 68.2 36 88.9
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 1.1e-09 68.2 37 86.5
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 1.1e-09 68.2 36 88.9
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 1.1e-09 68.2 36 88.9
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.1e-09 68.2 36 88.9
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.1e-09 68.2 36 88.9
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 1.1e-09 68.2 36 88.9
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 1.9e-09 67.4 36 88.9
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.9e-09 67.4 36 88.9
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 1.9e-09 67.4 46 69.6
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 1.9e-09 67.4 36 91.7
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.4e-09 67.0 44 75.0
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 3.2e-09 66.6 36 86.1
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 3.2e-09 66.6 36 86.1
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 3.2e-09 66.6 36 86.1
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 3.2e-09 66.6 36 86.1
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 3.2e-09 66.6 36 86.1
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 3.2e-09 66.6 36 86.1
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 3.2e-09 66.6 36 86.1
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 3.2e-09 66.6 36 86.1
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 3.2e-09 66.6 36 86.1
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 3.2e-09 66.6 36 86.1
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 3.2e-09 66.6 36 86.1
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 3.2e-09 66.6 36 86.1
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.2e-09 66.6 36 86.1
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 3.2e-09 66.6 36 86.1
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 4.2e-09 66.2 36 83.3
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 4.2e-09 66.2 36 83.3
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 5.5e-09 65.9 36 86.1
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 5.5e-09 65.9 36 86.1
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 5.5e-09 65.9 44 72.7
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 5.5e-09 65.9 36 86.1
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 5.5e-09 65.9 36 86.1
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 5.5e-09 65.9 36 86.1
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 7.1e-09 65.5 36 83.3
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 7.1e-09 65.5 36 83.3
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 7.1e-09 65.5 36 83.3
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 7.1e-09 65.5 36 83.3
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 7.1e-09 65.5 36 83.3
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 7.1e-09 65.5 36 83.3
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 7.1e-09 65.5 36 83.3
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 7.1e-09 65.5 36 83.3
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 9.3e-09 65.1 36 83.3
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 9.3e-09 65.1 36 83.3
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 1.2e-08 64.7 36 83.3
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 1.2e-08 64.7 36 83.3
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 1.2e-08 64.7 36 83.3
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 1.6e-08 64.3 36 83.3
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 1.6e-08 64.3 36 80.6
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 1.6e-08 64.3 36 80.6
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 1.6e-08 64.3 36 83.3
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.1e-08 63.9 36 77.8
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 2.1e-08 63.9 36 83.3
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 2.1e-08 63.9 36 83.3
HanXRQChr14g0443761 Helianthus annuus HOM05D002867 ORTHO05D003336 2.1e-08 63.9 80 48.8
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 2.7e-08 63.5 36 83.3
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 2.7e-08 63.5 36 86.1
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 2.7e-08 63.5 36 80.6
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 3.5e-08 63.2 34 85.3
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 3.5e-08 63.2 36 80.6
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 3.5e-08 63.2 35 82.9
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 3.5e-08 63.2 36 80.6
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 4.6e-08 62.8 36 80.6
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.6e-08 62.8 36 75.0
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 4.6e-08 62.8 36 83.3
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.6e-08 62.8 36 83.3
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.6e-08 62.8 36 83.3
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.6e-08 62.8 36 83.3
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.6e-08 62.8 36 83.3
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 4.6e-08 62.8 36 80.6
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 4.6e-08 62.8 36 80.6
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 6.0e-08 62.4 36 77.8
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 6.0e-08 62.4 36 80.6
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 6.0e-08 62.4 36 83.3
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 7.9e-08 62.0 36 80.6
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 7.9e-08 62.0 36 77.8
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 1.0e-07 61.6 36 80.6
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 1.3e-07 61.2 36 75.0
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 1.3e-07 61.2 36 75.0
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 1.3e-07 61.2 37 75.7
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.8e-07 60.8 36 77.8
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 1.8e-07 60.8 35 82.9
Lsat_1_v5_gn_2_72940 Lactuca sativa HOM05D002867 ORTHO05D003336 1.8e-07 60.8 80 43.8
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 2.3e-07 60.5 36 77.8
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 2.3e-07 60.5 36 77.8
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 2.3e-07 60.5 36 72.2
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 3.0e-07 60.1 36 77.8
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 3.0e-07 60.1 36 77.8
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.9e-07 59.7 44 63.6
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 3.9e-07 59.7 36 77.8
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 5.1e-07 59.3 36 77.8
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 5.1e-07 59.3 36 80.6
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 5.1e-07 59.3 36 77.8
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.1e-07 59.3 44 65.9
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 6.7e-07 58.9 36 72.2
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 6.7e-07 58.9 36 77.8
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 8.7e-07 58.5 36 75.0
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 8.7e-07 58.5 36 75.0
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 8.7e-07 58.5 36 77.8
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 1.1e-06 58.2 36 75.0
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.5e-06 57.8 44 63.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.9e-06 57.4 36 77.8
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.9e-06 57.4 36 72.2
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.5e-06 57.0 36 75.0
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 3.3e-06 56.6 36 72.2
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 3.3e-06 56.6 36 69.4
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 3.3e-06 56.6 36 72.2
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 4.3e-06 56.2 36 69.4
HanXRQChr14g0443811 Helianthus annuus HOM05D002867 ORTHO05D003336 4.3e-06 56.2 79 44.3
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 7.4e-06 55.5 36 75.0


User provided reference genes

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