Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 8.7e-148 526.9 266 100.0
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 3.0e-116 422.2 266 80.5
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 8.8e-116 420.6 267 78.7
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 8.8e-116 420.6 267 80.9
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.2e-115 420.2 267 79.0
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 1.2e-115 420.2 267 80.9
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.5e-115 419.9 267 80.9
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 2.6e-115 419.1 267 79.4
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 5.7e-115 417.9 267 79.8
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 9.8e-115 417.2 267 78.7
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 9.8e-115 417.2 268 79.5
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.7e-114 416.4 267 78.7
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 3.7e-114 415.2 267 79.8
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 1.8e-113 412.9 266 78.2
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.8e-113 412.9 267 78.7
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.8e-113 412.9 266 78.2
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 2.4e-113 412.5 267 77.5
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 9.1e-113 410.6 267 79.4
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 9.1e-113 410.6 267 76.8
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.6e-112 409.8 264 78.0
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 2.0e-112 409.5 268 78.7
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 2.7e-112 409.1 264 78.4
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 4.5e-112 408.3 262 79.0
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 7.7e-112 407.5 267 79.0
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 7.7e-112 407.5 262 79.0
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 1.0e-111 407.1 267 77.2
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.2e-111 406.0 268 78.4
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 2.9e-111 405.6 266 77.4
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.9e-111 405.6 269 78.8
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 5.0e-111 404.8 259 77.6
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 8.5e-111 404.1 264 77.7
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 8.5e-111 404.1 267 77.9
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 8.5e-111 404.1 268 76.9
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 1.1e-110 403.7 266 77.8
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.1e-110 403.7 267 76.4
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.5e-110 403.3 264 77.3
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 1.9e-110 402.9 259 78.0
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 1.9e-110 402.9 267 77.9
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.5e-110 402.5 267 78.3
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 2.5e-110 402.5 268 77.2
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.5e-110 401.4 267 77.9
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 7.2e-110 401.0 267 77.5
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 9.5e-110 400.6 274 75.9
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 2.1e-109 399.4 266 77.8
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 2.8e-109 399.1 267 77.2
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 6.1e-109 397.9 267 75.3
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 6.1e-109 397.9 267 77.2
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 1.0e-108 397.1 267 75.7
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 1.4e-108 396.7 265 75.8
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.8e-108 396.4 267 77.9
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 2.3e-108 396.0 268 76.9
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 3.0e-108 395.6 267 74.2
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 3.0e-108 395.6 267 76.4
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 5.2e-108 394.8 270 75.6
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 1.2e-107 393.7 267 76.8
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.5e-107 393.3 267 77.2
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 1.5e-107 393.3 268 76.1
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 2.6e-107 392.5 266 76.7
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 2.6e-107 392.5 267 76.4
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 2.6e-107 392.5 267 77.2
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.6e-107 392.5 262 74.8
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 3.4e-107 392.1 268 75.7
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 9.8e-107 390.6 269 72.1
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.8e-106 389.0 265 75.5
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 4.9e-106 388.3 251 80.1
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 6.3e-106 387.9 261 77.0
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 8.3e-106 387.5 252 79.8
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 8.3e-106 387.5 264 76.1
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.1e-105 387.1 259 77.2
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 3.1e-105 385.6 252 77.8
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 4.1e-105 385.2 275 75.3
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 5.4e-105 384.8 261 75.1
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 1.6e-104 383.3 260 75.0
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 2.7e-104 382.5 268 76.1
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 4.5e-104 381.7 267 74.5
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 1.3e-103 380.2 267 74.5
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.3e-103 380.2 267 74.9
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 5.0e-103 378.3 267 72.7
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 6.6e-103 377.9 291 69.8
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.3e-102 375.6 294 69.4
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.3e-102 375.2 267 73.8
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 5.6e-102 374.8 264 73.1
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 5.6e-102 374.8 268 71.3
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 7.3e-102 374.4 267 73.8
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 7.3e-102 374.4 266 71.1
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 9.5e-102 374.0 264 73.1
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 2.8e-101 372.5 266 71.1
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 3.6e-101 372.1 250 74.8
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 3.6e-101 372.1 269 71.0
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.1e-101 371.3 250 76.0
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 8.0e-101 370.9 267 73.8
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 1.0e-100 370.5 266 75.2
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.8e-100 369.8 268 70.5
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.3e-100 369.4 264 72.0
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.0e-100 369.0 251 73.3
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 1.5e-99 366.7 238 78.2
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 1.5e-99 366.7 308 65.9
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.0e-99 366.3 264 71.6
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 3.4e-99 365.5 265 71.7
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 7.5e-99 364.4 284 69.7
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 9.8e-99 364.0 261 72.4
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.3e-98 363.6 257 73.9
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 2.2e-98 362.8 269 69.1
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 2.2e-98 362.8 254 72.8
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 4.9e-98 361.7 280 67.5
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 3.2e-97 359.0 263 71.1
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 1.3e-95 353.6 320 61.9
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.5e-94 350.1 250 73.2
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 9.5e-94 347.4 258 69.4
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 9.5e-94 347.4 258 69.4
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 2.1e-93 346.3 265 70.6
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 3.6e-93 345.5 252 70.2
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 2.3e-92 342.8 257 68.5
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 3.1e-92 342.4 263 69.2
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 3.1e-92 342.4 263 69.2
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 4.0e-92 342.0 275 68.4
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 8.9e-92 340.9 264 69.3
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 8.9e-92 340.9 256 69.5
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 2.6e-91 339.3 264 70.1
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 9.8e-91 337.4 263 68.1
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 1.7e-90 336.7 264 69.3
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 1.7e-90 336.7 264 69.3
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.7e-90 335.5 265 66.8
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 4.9e-90 335.1 263 68.1
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 6.4e-90 334.7 263 68.1
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 6.4e-90 334.7 263 67.3
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.1e-89 334.0 265 66.8
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 1.1e-89 334.0 257 68.1
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.9e-89 333.2 263 69.6
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.0e-88 329.7 265 67.5
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 2.0e-88 329.7 283 65.7
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.9e-87 325.5 263 68.4
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 6.6e-87 324.7 263 67.3
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.5e-86 323.6 261 67.4
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 4.3e-86 322.0 268 64.2
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 6.2e-85 318.2 224 74.6
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 1.1e-84 317.4 235 70.6
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 4.0e-84 315.5 205 78.0
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 4.4e-83 312.0 198 78.3
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.7e-82 310.1 259 64.1
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 2.1e-80 303.1 264 62.9
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.5e-80 302.4 261 62.5
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.9e-78 296.6 265 61.9
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 4.3e-78 295.4 262 62.2
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 7.6e-75 284.6 267 60.7
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 1.7e-74 283.5 198 73.7
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 2.9e-74 282.7 242 65.3
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 1.9e-73 280.0 264 60.6
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 4.1e-73 278.9 261 59.0
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.6e-70 268.5 144 91.7
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.8e-68 263.5 191 71.7
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.2e-57 226.1 174 68.4
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 6.5e-42 175.3 213 49.3
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 5.7e-38 162.2 148 58.1
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 3.7e-37 159.5 200 45.0
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.4e-36 156.8 240 43.8
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 8.5e-34 148.3 118 66.9
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.8e-31 138.3 74 94.6
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 7.4e-30 135.2 93 72.0
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 1.5e-27 127.5 117 59.8
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 8.5e-26 121.7 89 68.5
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-25 121.3 237 38.4
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 2.5e-17 93.6 194 34.5
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 9.4e-17 91.7 159 39.6
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 9.7e-14 81.6 102 49.0
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 7.7e-11 72.0 141 34.8
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 1.5e-09 67.8 41 75.6
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 1.9e-09 67.4 120 41.7
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 1.6e-08 64.3 43 65.1
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 8.0e-08 62.0 86 37.2
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.8e-07 60.8 41 68.3
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.3e-07 60.5 40 70.0
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 1.5e-06 57.8 32 90.6
BraA09t38747Z Brassica rapa HOM05D003984 ORTHO05D033849 3.3e-06 56.6 63 52.4
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 9.7e-06 55.1 35 71.4


User provided reference genes

Program Settings