Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.0e-134 483.4 245 100.0
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.2e-74 283.9 255 63.1
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 2.8e-60 236.1 246 56.9
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 8.3e-52 208.0 332 41.6
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 3.4e-29 132.9 287 35.2
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 7.5e-29 131.7 296 36.1
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 2.1e-26 123.6 287 34.5
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 6.0e-26 122.1 291 34.4
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.3e-25 120.9 301 35.2
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 2.3e-25 120.2 291 35.7
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 3.0e-25 119.8 303 33.7
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 8.6e-25 118.2 291 34.4
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.1e-24 117.9 260 39.2
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.1e-24 117.9 273 38.1
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.1e-24 117.9 283 32.9
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.5e-24 117.5 272 36.0
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 3.3e-24 116.3 283 32.5
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.6e-23 114.0 286 33.9
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 2.1e-23 113.6 296 31.8
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 2.8e-23 113.2 245 38.8
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 2.4e-22 110.2 291 32.0
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 8.9e-22 108.2 256 31.6
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 2.6e-21 106.7 287 34.1
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 2.9e-20 103.2 101 57.4
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.9e-20 103.2 94 57.4
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 6.4e-20 102.1 292 29.5
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 3.2e-19 99.8 294 31.3
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 5.4e-19 99.0 284 31.3
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 2.1e-18 97.1 292 29.8
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 4.6e-18 95.9 284 31.0
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 2.3e-17 93.6 260 30.8
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 3.0e-17 93.2 277 30.0
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 3.9e-17 92.8 279 30.8
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.1e-16 91.3 230 34.3
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 1.5e-16 90.9 264 30.3
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 1.5e-16 90.9 259 31.3
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 1.9e-16 90.5 278 32.0
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 9.6e-16 88.2 284 30.6
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 1.2e-15 87.8 257 30.7
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 2.1e-15 87.0 293 29.7
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 4.7e-15 85.9 303 29.0
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 6.2e-15 85.5 282 28.4
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.1e-14 84.7 264 31.4
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 1.8e-14 84.0 260 31.2
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.8e-14 84.0 258 30.2
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 4.0e-14 82.8 261 29.5
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 4.0e-14 82.8 236 31.4
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 5.2e-14 82.4 66 65.2
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 9.0e-14 81.6 276 29.0
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 9.0e-14 81.6 273 31.9
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 9.0e-14 81.6 257 29.6
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 9.0e-14 81.6 261 29.1
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.2e-13 81.3 254 30.3
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 1.2e-13 81.3 265 29.4
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 2.6e-13 80.1 254 29.5
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 3.4e-13 79.7 274 31.0
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 4.4e-13 79.3 93 46.2
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 9.9e-13 78.2 90 46.7
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 9.9e-13 78.2 256 29.7
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.3e-12 77.8 272 29.8
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.2e-12 77.0 249 29.3
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 2.2e-12 77.0 253 30.4
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 2.9e-12 76.6 103 43.7
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.8e-12 76.3 247 29.1
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 3.8e-12 76.3 80 48.8
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 4.9e-12 75.9 269 30.1
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.9e-12 75.9 264 28.4
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 6.4e-12 75.5 254 27.2
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 6.4e-12 75.5 68 55.9
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 1.4e-11 74.3 95 47.4
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.4e-11 74.3 270 28.1
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.4e-11 74.3 280 28.2
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 1.4e-11 74.3 241 27.0
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.9e-11 73.9 106 39.6
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.4e-11 73.6 277 26.4
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 3.2e-11 73.2 82 48.8
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 4.2e-11 72.8 237 30.0
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.2e-11 72.8 277 27.1
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.2e-11 72.8 280 27.1
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 5.4e-11 72.4 255 28.2
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 9.3e-11 71.6 67 50.7
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 9.3e-11 71.6 78 52.6
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 9.3e-11 71.6 265 27.5
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.2e-10 71.2 67 50.7
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 1.2e-10 71.2 252 28.6
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.2e-10 71.2 114 39.5
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 1.2e-10 71.2 75 49.3
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.6e-10 70.9 262 27.9
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.6e-10 70.9 133 36.8
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.1e-10 70.5 67 50.7
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 2.1e-10 70.5 77 51.9
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 2.1e-10 70.5 114 39.5
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.1e-10 70.5 66 54.5
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 2.7e-10 70.1 68 55.9
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 3.5e-10 69.7 85 43.5
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 3.5e-10 69.7 67 52.2
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 4.6e-10 69.3 63 55.6
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.6e-10 69.3 263 27.4
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 4.6e-10 69.3 229 30.6
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 6.0e-10 68.9 66 51.5
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.0e-10 68.9 66 51.5
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.0e-10 68.9 66 51.5
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.0e-10 68.9 66 51.5
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 6.0e-10 68.9 100 39.0
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 6.0e-10 68.9 75 48.0
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 7.8e-10 68.6 243 25.5
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.0e-09 68.2 243 29.6
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.0e-09 68.2 228 27.2
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.0e-09 68.2 67 50.7
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 1.0e-09 68.2 251 28.7
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.3e-09 67.8 96 39.6
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 1.3e-09 67.8 67 50.7
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.3e-09 67.8 263 26.2
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.3e-09 67.8 145 33.8
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.3e-09 67.8 221 28.5
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 1.3e-09 67.8 83 44.6
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 2.3e-09 67.0 71 50.7
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.0e-09 66.6 67 47.8
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 3.0e-09 66.6 67 47.8
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 3.0e-09 66.6 255 27.1
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 3.9e-09 66.2 73 49.3
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 3.9e-09 66.2 66 53.0
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.9e-09 66.2 75 45.3
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 3.9e-09 66.2 99 38.4
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 5.1e-09 65.9 93 44.1
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 5.1e-09 65.9 70 51.4
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 5.1e-09 65.9 70 51.4
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 5.1e-09 65.9 108 35.2
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 6.6e-09 65.5 73 49.3
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 6.6e-09 65.5 66 51.5
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 8.7e-09 65.1 280 25.7
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.1e-08 64.7 191 28.8
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 1.5e-08 64.3 241 29.0
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 1.5e-08 64.3 135 34.8
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.9e-08 63.9 70 50.0
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 2.5e-08 63.5 82 46.3
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 3.3e-08 63.2 74 47.3
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 3.3e-08 63.2 67 47.8
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 4.3e-08 62.8 70 50.0
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 4.3e-08 62.8 258 25.6
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 5.6e-08 62.4 68 48.5
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 5.6e-08 62.4 73 47.9
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 5.6e-08 62.4 71 45.1
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 5.6e-08 62.4 67 46.3
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 7.3e-08 62.0 100 38.0
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 7.3e-08 62.0 71 46.5
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 1.3e-07 61.2 270 27.8
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.8e-07 60.1 119 31.9
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 6.2e-07 58.9 243 27.2
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 6.2e-07 58.9 76 42.1
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 8.1e-07 58.5 75 41.3
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.1e-06 58.2 255 27.5
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 1.1e-06 58.2 66 48.5
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 1.4e-06 57.8 300 26.7
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 1.8e-06 57.4 75 42.7
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.0e-06 56.2 178 29.8
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 5.3e-06 55.8 114 31.6
Mapoly0074s0020 Marchantia polymorpha HOM05D003937 ORTHO05D004583 9.0e-06 55.1 65 46.2


User provided reference genes

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