Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 3.2e-170 601.7 301 100.0
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 1.5e-127 459.9 271 83.4
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 9.6e-127 457.2 272 82.0
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 6.2e-126 454.5 269 82.5
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.5e-124 449.9 276 79.0
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 6.1e-113 411.4 246 78.9
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 1.4e-112 410.2 244 79.5
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.9e-112 408.7 242 79.8
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 6.7e-112 407.9 246 78.5
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 6.7e-112 407.9 242 79.8
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.9e-111 406.4 242 79.3
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 9.7e-111 404.1 241 79.3
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.3e-110 403.7 260 74.6
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.3e-110 403.7 242 79.3
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 1.7e-110 403.3 243 77.4
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 2.8e-110 402.5 254 75.6
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 3.7e-110 402.1 245 76.3
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.7e-110 402.1 244 77.5
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 8.2e-110 401.0 243 77.8
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 8.2e-110 401.0 271 71.6
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.4e-109 400.2 249 75.9
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 1.4e-109 400.2 242 78.9
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.4e-109 400.2 242 78.9
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.8e-109 399.8 272 69.5
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.2e-108 397.1 256 75.0
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.5e-108 396.7 241 76.8
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.5e-108 396.7 242 76.9
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 2.0e-108 396.4 242 77.3
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 2.6e-108 396.0 242 77.7
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 2.6e-108 396.0 243 76.5
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 3.4e-108 395.6 246 76.4
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 7.7e-108 394.4 242 76.9
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.7e-107 393.3 250 74.4
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 2.2e-107 392.9 251 74.5
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 2.9e-107 392.5 243 76.1
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 2.9e-107 392.5 243 75.7
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 6.5e-107 391.3 244 75.8
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.1e-106 390.6 250 75.2
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.4e-106 390.2 261 73.2
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 1.9e-106 389.8 267 68.5
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 2.5e-106 389.4 270 70.0
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 2.5e-106 389.4 245 74.7
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.5e-106 389.4 243 75.3
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 2.5e-106 389.4 289 66.4
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 3.2e-106 389.0 248 71.4
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 3.2e-106 389.0 245 73.1
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.2e-106 389.0 242 74.8
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.2e-106 389.0 242 74.8
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 3.2e-106 389.0 273 68.1
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 4.2e-106 388.7 278 67.3
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 4.2e-106 388.7 248 71.8
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 5.5e-106 388.3 245 72.2
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 5.5e-106 388.3 270 68.9
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 7.2e-106 387.9 244 73.0
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 9.4e-106 387.5 245 73.1
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.4e-106 387.5 242 74.4
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.2e-105 387.1 244 73.8
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 1.6e-105 386.7 252 72.6
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 2.1e-105 386.3 248 73.0
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 2.7e-105 386.0 245 74.7
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 2.7e-105 386.0 244 73.8
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 3.6e-105 385.6 244 73.0
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 3.6e-105 385.6 244 74.6
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 4.7e-105 385.2 244 74.2
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 6.1e-105 384.8 243 73.3
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 6.1e-105 384.8 242 75.2
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 1.0e-104 384.0 254 72.8
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 1.0e-104 384.0 250 72.0
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 1.0e-104 384.0 248 71.4
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.4e-104 383.6 243 74.9
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 2.3e-104 382.9 250 71.6
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 3.0e-104 382.5 247 71.7
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 6.7e-104 381.3 285 64.9
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 8.8e-104 380.9 248 73.8
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 1.1e-103 380.6 248 72.6
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 3.3e-103 379.0 243 73.7
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 7.4e-103 377.9 245 73.1
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 9.7e-103 377.5 247 72.1
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 2.2e-102 376.3 245 72.2
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 2.8e-102 375.9 246 71.1
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 3.7e-102 375.6 246 71.1
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.8e-101 373.2 243 71.6
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 3.1e-101 372.5 275 65.8
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 4.1e-101 372.1 246 70.7
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 6.9e-101 371.3 244 68.9
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 6.9e-101 371.3 244 69.3
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 3.4e-100 369.0 249 71.1
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 2.2e-99 366.3 243 72.0
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 3.8e-99 365.5 242 71.1
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 5.5e-98 361.7 242 69.0
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.0e-96 357.5 234 74.8
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.8e-96 356.7 256 68.8
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 3.0e-96 355.9 274 63.9
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 2.0e-95 353.2 348 54.0
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 1.8e-93 346.7 212 77.4
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 6.5e-91 338.2 273 60.4
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 6.5e-91 338.2 217 74.7
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 1.9e-90 336.7 245 65.3
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 4.2e-90 335.5 251 67.7
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.0e-88 330.9 371 50.1
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 7.5e-87 324.7 241 66.0
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.2e-86 323.2 212 70.3
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.4e-85 320.5 278 56.8
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 7.0e-85 318.2 255 58.4
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 9.1e-85 317.8 249 65.5
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 2.7e-84 316.2 213 72.8
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 3.8e-83 312.4 212 72.2
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 8.0e-81 304.7 250 56.4
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.0e-80 304.3 188 77.1
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.8e-80 303.5 247 61.5
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 1.3e-70 270.8 250 52.4
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.7e-70 270.4 228 60.5
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 2.8e-70 269.6 214 59.8
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.5e-68 262.7 167 76.6
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 4.4e-63 245.7 178 68.0
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 9.8e-63 244.6 244 47.1
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 2.9e-62 243.0 166 69.9
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 7.0e-61 238.4 229 55.9
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 4.6e-60 235.7 159 69.8
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 8.6e-59 231.5 248 50.0
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 8.0e-57 224.9 142 75.4
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 2.6e-55 219.9 206 58.3
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 2.2e-54 216.9 243 41.6
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 2.1e-52 210.3 192 58.3
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 7.8e-52 208.4 248 48.4
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 7.3e-50 201.8 238 45.8
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.8e-49 199.9 136 70.6
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 8.1e-49 198.4 132 70.5
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.1e-48 198.0 136 70.6
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.1e-45 188.0 125 69.6
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.4e-45 186.8 167 55.7
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 3.2e-45 186.4 127 71.7
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.7e-43 180.6 118 71.2
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 4.3e-42 176.0 110 77.3
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.8e-41 173.3 111 71.2
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.1e-40 171.4 110 70.0
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 5.2e-40 169.1 101 74.3
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.5e-39 167.5 136 60.3
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.5e-39 167.5 136 60.3
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 4.9e-38 162.5 237 37.6
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 2.4e-37 160.2 277 36.5
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 5.1e-35 152.5 164 50.0
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 8.7e-35 151.8 99 67.7
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 7.3e-34 148.7 92 73.9
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 8.1e-33 145.2 212 39.2
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.8e-32 144.1 82 76.8
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 2.2e-30 137.1 79 74.7
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 4.6e-28 129.4 78 73.1
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 3.0e-27 126.7 76 71.1
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 2.1e-25 120.6 76 68.4
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 2.0e-23 114.0 64 76.6
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.8e-23 112.5 56 87.5
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 2.9e-22 110.2 93 61.3
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 4.9e-22 109.4 246 29.7
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 6.0e-20 102.4 58 72.4
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.1e-18 98.2 60 70.0
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 5.6e-18 95.9 70 68.6
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 4.8e-17 92.8 59 66.1
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 2.6e-15 87.0 54 68.5
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 7.6e-15 85.5 47 78.7
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.8e-14 83.2 114 41.2
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 4.2e-13 79.7 59 54.2
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 1.9e-10 70.9 100 39.0
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 1.3e-06 58.2 45 60.0
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 1.7e-06 57.8 76 40.8


User provided reference genes

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