Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0367261 Helianthus annuus HOM05D000231 ORTHO05D000132 7.6e-39 163.3 80 100.0
HanXRQChr15g0491681 Helianthus annuus HOM05D000231 ORTHO05D000132 7.2e-21 103.6 66 81.8
ECA232G1297 Erigeron canadensis HOM05D000231 ORTHO05D000132 1.1e-16 89.7 66 71.2
Lsat_1_v5_gn_4_163661 Lactuca sativa HOM05D000231 ORTHO05D000132 4.1e-16 87.8 65 69.2
HanXRQChr14g0460401 Helianthus annuus HOM05D000231 ORTHO05D000132 5.9e-15 84.0 66 68.2
CANSAT25G0814 Cannabis sativa HOM05D000231 ORTHO05D000132 3.0e-11 71.6 62 56.5
arahy.Tifrunner.gnm1.ann1.9Z0920 Arachis hypogaea HOM05D000231 ORTHO05D000132 3.3e-10 68.2 63 54.0
MD02G1178200 Malus domestica HOM05D000231 ORTHO05D000132 5.7e-10 67.4 62 54.8
arahy.Tifrunner.gnm1.ann1.69JDQK Arachis hypogaea HOM05D000231 ORTHO05D000132 9.7e-10 66.6 62 53.2
arahy.Tifrunner.gnm1.ann1.SV5QUW Arachis hypogaea HOM05D000231 ORTHO05D000132 9.7e-10 66.6 62 53.2
CiPaw.02G006300 Carya illinoinensis HOM05D000231 ORTHO05D000132 9.7e-10 66.6 62 50.0
arahy.Tifrunner.gnm1.ann1.HR0HK5 Arachis hypogaea HOM05D000231 ORTHO05D000132 1.3e-09 66.2 62 53.2
Dinv26861 Davidia involucrata HOM05D000231 ORTHO05D000132 1.3e-09 66.2 62 56.5
Potri.007G048300 Populus trichocarpa HOM05D000231 ORTHO05D000132 1.7e-09 65.9 62 50.0
Sabra05G0113300 Salix brachista HOM05D000231 ORTHO05D000132 1.7e-09 65.9 62 51.6
Hma1.2p1_0239F.1_g100090 Hydrangea macrophylla HOM05D000231 ORTHO05D000132 2.2e-09 65.5 62 54.8
Hund06326 Selenicereus undatus HOM05D000231 ORTHO05D000132 2.8e-09 65.1 62 50.0
MD15G1288100 Malus domestica HOM05D000231 ORTHO05D000132 3.7e-09 64.7 62 54.8
Potri.005G141900 Populus trichocarpa HOM05D000231 ORTHO05D000132 3.7e-09 64.7 62 48.4
Sabra07G0043200 Salix brachista HOM05D000231 ORTHO05D000132 3.7e-09 64.7 62 48.4
Prupe.6G229700 Prunus persica HOM05D000231 ORTHO05D000132 4.8e-09 64.3 62 50.0
AUR62010271 Chenopodium quinoa HOM05D000231 ORTHO05D000132 8.2e-09 63.5 62 50.0
AUR62013251 Chenopodium quinoa HOM05D000231 ORTHO05D000132 8.2e-09 63.5 62 50.0
Lj7A76T77 Lonicera japonica HOM05D000231 ORTHO05D000132 1.1e-08 63.2 62 53.2
Nitab4.5_0002543g0120 Nicotiana tabacum HOM05D000231 ORTHO05D000132 1.1e-08 63.2 62 51.6
Oeu009923.1 Olea europaea HOM05D000231 ORTHO05D000132 1.1e-08 63.2 63 50.8
Hund00141 Selenicereus undatus HOM05D000231 ORTHO05D000132 1.1e-08 63.2 63 50.8
Aqoxy5G01160 Aquilegia oxysepala HOM05D000231 ORTHO05D000132 1.4e-08 62.8 62 51.6
Lj4g0022118 Lotus japonicus HOM05D000231 ORTHO05D000132 1.4e-08 62.8 62 51.6
RcHm_v2.0_Chr2g0106601 Rosa chinensis HOM05D000231 ORTHO05D000132 1.4e-08 62.8 62 53.2
QL11p034257 Quercus lobata HOM05D000231 ORTHO05D000132 1.8e-08 62.4 62 46.8
Ciclev10025890m.g Citrus clementina HOM05D000231 ORTHO05D000132 2.4e-08 62.0 62 48.4
Lj4A156T47 Lonicera japonica HOM05D000231 ORTHO05D000132 2.4e-08 62.0 61 55.7
Lj4P154T16 Lonicera japonica HOM05D000231 ORTHO05D000132 2.4e-08 62.0 61 55.7
Nitab4.5_0003771g0030 Nicotiana tabacum HOM05D000231 ORTHO05D000132 2.4e-08 62.0 62 50.0
Oeu028248.1 Olea europaea HOM05D000231 ORTHO05D000132 2.4e-08 62.0 63 44.4
Manes.12G108100 Manihot esculenta HOM05D000231 ORTHO05D000132 3.1e-08 61.6 62 48.4
Oeu007924.1 Olea europaea HOM05D000231 ORTHO05D000132 3.1e-08 61.6 63 50.8
TWI73G1206 Tripterygium wilfordii HOM05D000231 ORTHO05D000132 3.1e-08 61.6 62 50.0
Haze_15354 Corylus avellana HOM05D000231 ORTHO05D000132 4.1e-08 61.2 62 45.2
MD10G1095900 Malus domestica HOM05D000231 ORTHO05D000132 4.1e-08 61.2 62 50.0
Prupe.8G131900 Prunus persica HOM05D000231 ORTHO05D000132 4.1e-08 61.2 62 48.4
Cfa004058 Carpinus fangiana HOM05D000231 ORTHO05D000132 5.3e-08 60.8 67 44.8
Solyc01g107730.3 Solanum lycopersicum HOM05D000231 ORTHO05D000132 5.3e-08 60.8 66 45.5
CSS0007207 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 7.0e-08 60.5 61 45.9
FAN23G1002 Fragaria x ananassa HOM05D000231 ORTHO05D000132 7.0e-08 60.5 62 50.0
FAN26G0311 Fragaria x ananassa HOM05D000231 ORTHO05D000132 7.0e-08 60.5 62 50.0
Peaxi162Scf00003g02442 Petunia axillaris HOM05D000231 ORTHO05D000132 7.0e-08 60.5 66 45.5
Peaxi162Scf00016g02250 Petunia axillaris HOM05D000231 ORTHO05D000132 7.0e-08 60.5 66 42.4
ECA246G3479 Erigeron canadensis HOM05D000231 ORTHO05D000132 9.1e-08 60.1 66 47.0
FAN28G0494 Fragaria x ananassa HOM05D000231 ORTHO05D000132 9.1e-08 60.1 62 48.4
MD05G1087300 Malus domestica HOM05D000231 ORTHO05D000132 9.1e-08 60.1 62 48.4
TAR376G1149 Trochodendron aralioides HOM05D000231 ORTHO05D000132 9.1e-08 60.1 62 48.4
TAR381G1292 Trochodendron aralioides HOM05D000231 ORTHO05D000132 9.1e-08 60.1 62 48.4
VMungo1215G0445 Vigna mungo HOM05D000231 ORTHO05D000132 9.1e-08 60.1 66 47.0
Duzib132G1045 Durio zibethinus HOM05D000231 ORTHO05D000132 1.2e-07 59.7 62 46.8
FAN28G0680 Fragaria x ananassa HOM05D000231 ORTHO05D000132 1.2e-07 59.7 62 48.4
PSO170G3388 Papaver somniferum HOM05D000231 ORTHO05D000132 1.6e-07 59.3 65 41.5
PSO210G2832 Papaver somniferum HOM05D000231 ORTHO05D000132 1.6e-07 59.3 65 41.5
GSVIVG01000226001 Vitis vinifera HOM05D000231 ORTHO05D000132 1.6e-07 59.3 62 48.4
CAN.G1231.17 Capsicum annuum HOM05D000231 ORTHO05D000132 2.0e-07 58.9 66 42.4
Dinv30030 Davidia involucrata HOM05D000231 ORTHO05D000132 2.0e-07 58.9 59 49.2
Dinv42182 Davidia involucrata HOM05D000231 ORTHO05D000132 2.0e-07 58.9 63 46.0
FvH4_1g16680 Fragaria vesca HOM05D000231 ORTHO05D000132 2.0e-07 58.9 62 48.4
FAN19G2160 Fragaria x ananassa HOM05D000231 ORTHO05D000132 2.0e-07 58.9 62 48.4
Lalb_Chr09g0333881 Lupinus albus HOM05D000231 ORTHO05D000132 2.0e-07 58.9 62 50.0
Atru.chr5.2595 Acer truncatum HOM05D000231 ORTHO05D000132 2.7e-07 58.5 66 37.9
Atru.chr9.456 Acer truncatum HOM05D000231 ORTHO05D000132 2.7e-07 58.5 66 37.9
Haze_10155 Corylus avellana HOM05D000231 ORTHO05D000132 2.7e-07 58.5 66 47.0
Glyma.17G167700 Glycine max HOM05D000231 ORTHO05D000132 2.7e-07 58.5 62 48.4
Lalb_Chr05g0226311 Lupinus albus HOM05D000231 ORTHO05D000132 2.7e-07 58.5 62 45.2
Phvul.002G015500 Phaseolus vulgaris HOM05D000231 ORTHO05D000132 2.7e-07 58.5 62 51.6
MSTRG.20177 Avicennia marina HOM05D000231 ORTHO05D000132 3.5e-07 58.2 62 50.0
CiPaw.05G009800 Carya illinoinensis HOM05D000231 ORTHO05D000132 3.5e-07 58.2 62 46.8
Ciclev10028675m.g Citrus clementina HOM05D000231 ORTHO05D000132 3.5e-07 58.2 63 42.9
Glyma.05G097300 Glycine max HOM05D000231 ORTHO05D000132 3.5e-07 58.2 62 46.8
Medtr1g107535 Medicago truncatula HOM05D000231 ORTHO05D000132 3.5e-07 58.2 65 47.7
Nn1g04722 Nelumbo nucifera HOM05D000231 ORTHO05D000132 3.5e-07 58.2 62 46.8
Sopen01g049910 Solanum pennellii HOM05D000231 ORTHO05D000132 3.5e-07 58.2 66 43.9
PGSC0003DMG400025868 Solanum tuberosum HOM05D000231 ORTHO05D000132 3.5e-07 58.2 66 42.4
Ah.01g018030 Amaranthus hybridus HOM05D000231 ORTHO05D000132 4.5e-07 57.8 56 50.0
arahy.Tifrunner.gnm1.ann1.E7ZF1G Arachis hypogaea HOM05D000231 ORTHO05D000132 4.5e-07 57.8 62 46.8
arahy.Tifrunner.gnm1.ann1.Q54IZ9 Arachis hypogaea HOM05D000231 ORTHO05D000132 4.5e-07 57.8 62 46.8
CiPaw.01G013500 Carya illinoinensis HOM05D000231 ORTHO05D000132 4.5e-07 57.8 65 44.6
Duzib052G1137 Durio zibethinus HOM05D000231 ORTHO05D000132 4.5e-07 57.8 62 48.4
Eucgr.I00802 Eucalyptus grandis HOM05D000231 ORTHO05D000132 4.5e-07 57.8 66 43.9
Oeu013252.1 Olea europaea HOM05D000231 ORTHO05D000132 4.5e-07 57.8 63 47.6
Nn5g30399 Nelumbo nucifera HOM05D000231 ORTHO05D000132 5.9e-07 57.4 62 48.4
Nitab4.5_0002815g0160 Nicotiana tabacum HOM05D000231 ORTHO05D000132 5.9e-07 57.4 66 39.4
Actinidia00420 Actinidia chinensis HOM05D000231 ORTHO05D000132 7.7e-07 57.0 63 42.9
BraA01t00417Z Brassica rapa HOM05D000231 ORTHO05D000132 7.7e-07 57.0 96 34.4
CiPaw.16G037600 Carya illinoinensis HOM05D000231 ORTHO05D000132 7.7e-07 57.0 62 46.8
Lj9A321T78 Lonicera japonica HOM05D000231 ORTHO05D000132 7.7e-07 57.0 65 46.2
Lalb_Chr05g0213431 Lupinus albus HOM05D000231 ORTHO05D000132 7.7e-07 57.0 66 43.9
Thecc.02G105900 Theobroma cacao HOM05D000231 ORTHO05D000132 7.7e-07 57.0 62 45.2
TWI09G1483 Tripterygium wilfordii HOM05D000231 ORTHO05D000132 7.7e-07 57.0 62 45.2
Cc00_g24520 Coffea canephora HOM05D000231 ORTHO05D000132 1.0e-06 56.6 62 43.5
Glyma.01G189700 Glycine max HOM05D000231 ORTHO05D000132 1.0e-06 56.6 66 47.0
Glyma.11G052500 Glycine max HOM05D000231 ORTHO05D000132 1.0e-06 56.6 66 48.5
HanXRQChr15g0472561 Helianthus annuus HOM05D000231 ORTHO05D000132 1.0e-06 56.6 59 47.5
PSO541G4797 Papaver somniferum HOM05D000231 ORTHO05D000132 1.0e-06 56.6 63 44.4
PSO675G6727 Papaver somniferum HOM05D000231 ORTHO05D000132 1.0e-06 56.6 63 44.4
Psat4g084120 Pisum sativum HOM05D000231 ORTHO05D000132 1.0e-06 56.6 63 47.6
VMungo0720G1505 Vigna mungo HOM05D000231 ORTHO05D000132 1.0e-06 56.6 62 46.8
MSTRG.5349 Avicennia marina HOM05D000231 ORTHO05D000132 1.3e-06 56.2 77 41.6
Ca_11087_v3 Cicer arietinum L. HOM05D000231 ORTHO05D000132 1.3e-06 56.2 64 42.2
Phvul.007G038400 Phaseolus vulgaris HOM05D000231 ORTHO05D000132 1.3e-06 56.2 62 46.8
Psat6g220000 Pisum sativum HOM05D000231 ORTHO05D000132 1.3e-06 56.2 65 46.2
A01p04280 Brassica napus HOM05D000231 ORTHO05D000132 1.7e-06 55.8 96 34.4
COL.COLO4_32615 Corchorus olitorius HOM05D000231 ORTHO05D000132 1.7e-06 55.8 62 43.5
TPR.G28428 Trifolium pratense HOM05D000231 ORTHO05D000132 1.7e-06 55.8 63 47.6
Ca_22126_v3 Cicer arietinum L. HOM05D000231 ORTHO05D000132 2.2e-06 55.5 63 47.6
Glyma.20G126700 Glycine max HOM05D000231 ORTHO05D000132 2.2e-06 55.5 62 45.2
Lalb_Chr02g0145361 Lupinus albus HOM05D000231 ORTHO05D000132 2.2e-06 55.5 63 46.0
Rhsim11G0161000 Rhododendron simsii HOM05D000231 ORTHO05D000132 2.2e-06 55.5 61 45.9
TWI75G1099 Tripterygium wilfordii HOM05D000231 ORTHO05D000132 2.2e-06 55.5 65 40.0
TAR625G0220 Trochodendron aralioides HOM05D000231 ORTHO05D000132 2.2e-06 55.5 62 46.8
TAR625G0938 Trochodendron aralioides HOM05D000231 ORTHO05D000132 2.2e-06 55.5 62 46.8
Lalb_Chr21g0308421 Lupinus albus HOM05D000231 ORTHO05D000132 2.9e-06 55.1 63 42.9
Medtr4g094942 Medicago truncatula HOM05D000231 ORTHO05D000132 2.9e-06 55.1 63 47.6
Phvul.003G240500 Phaseolus vulgaris HOM05D000231 ORTHO05D000132 2.9e-06 55.1 62 46.8
PGSC0003DMG400024984 Solanum tuberosum HOM05D000231 ORTHO05D000132 2.9e-06 55.1 61 42.6
TAR628G0595 Trochodendron aralioides HOM05D000231 ORTHO05D000132 2.9e-06 55.1 62 45.2
VMungo0251G2760 Vigna mungo HOM05D000231 ORTHO05D000132 2.9e-06 55.1 62 46.8
GSVIVG01003175001 Vitis vinifera HOM05D000231 ORTHO05D000132 2.9e-06 55.1 62 46.8
MSTRG.16722 Avicennia marina HOM05D000231 ORTHO05D000132 3.8e-06 54.7 62 46.8
CSS0039817 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 3.8e-06 54.7 60 48.3
Hma1.2p1_0796F.1_g219050 Hydrangea macrophylla HOM05D000231 ORTHO05D000132 3.8e-06 54.7 62 45.2
Potri.001G301800 Populus trichocarpa HOM05D000231 ORTHO05D000132 3.8e-06 54.7 62 41.9
Sp7g31910 Schrenkiella parvula HOM05D000231 ORTHO05D000132 3.8e-06 54.7 66 39.4
Sopen02g037540 Solanum pennellii HOM05D000231 ORTHO05D000132 3.8e-06 54.7 61 42.6
TWI79G0954 Tripterygium wilfordii HOM05D000231 ORTHO05D000132 3.8e-06 54.7 59 44.1
Cpa.g.sc200.13 Carica papaya HOM05D000231 ORTHO05D000132 5.0e-06 54.3 63 41.3
Oeu049889.1 Olea europaea HOM05D000231 ORTHO05D000132 5.0e-06 54.3 61 47.5
PGSC0003DMG400012007 Solanum tuberosum HOM05D000231 ORTHO05D000132 5.0e-06 54.3 61 42.6
vmacro02011 Vaccinium macrocarpon HOM05D000231 ORTHO05D000132 5.0e-06 54.3 61 44.3
Aqoxy6G02892 Aquilegia oxysepala HOM05D000231 ORTHO05D000132 6.5e-06 53.9 63 46.0
MSTRG.3441 Avicennia marina HOM05D000231 ORTHO05D000132 6.5e-06 53.9 66 45.5
COL.COLO4_10114 Corchorus olitorius HOM05D000231 ORTHO05D000132 6.5e-06 53.9 63 46.0
Nitab4.5_0001373g0060 Nicotiana tabacum HOM05D000231 ORTHO05D000132 6.5e-06 53.9 63 41.3
Oeu010391.1 Olea europaea HOM05D000231 ORTHO05D000132 6.5e-06 53.9 63 42.9
RcHm_v2.0_Chr6g0255741 Rosa chinensis HOM05D000231 ORTHO05D000132 6.5e-06 53.9 63 44.4
THA.LOC104807251 Tarenaya hassleriana HOM05D000231 ORTHO05D000132 6.5e-06 53.9 66 37.9
TPR.G13859 Trifolium pratense HOM05D000231 ORTHO05D000132 6.5e-06 53.9 65 44.6
C01p04680 Brassica napus HOM05D000231 ORTHO05D000132 8.5e-06 53.5 66 37.9
BolC1t00452H Brassica oleracea HOM05D000231 ORTHO05D000132 8.5e-06 53.5 66 37.9
DCAR_025754 Daucus carota HOM05D000231 ORTHO05D000132 8.5e-06 53.5 61 42.6
Duzib248G0578 Durio zibethinus HOM05D000231 ORTHO05D000132 8.5e-06 53.5 62 45.2
Gohir.D03G025500 Gossypium hirsutum HOM05D000231 ORTHO05D000132 8.5e-06 53.5 62 43.5
HanXRQChr12g0381821 Helianthus annuus HOM05D000231 ORTHO05D000132 8.5e-06 53.5 61 49.2
Lj5g0011581 Lotus japonicus HOM05D000231 ORTHO05D000132 8.5e-06 53.5 62 43.5
Manes.10G077365 Manihot esculenta HOM05D000231 ORTHO05D000132 8.5e-06 53.5 60 41.7
Peaxi162Scf00549g00427 Petunia axillaris HOM05D000231 ORTHO05D000132 8.5e-06 53.5 61 44.3
Solyc02g092980.3 Solanum lycopersicum HOM05D000231 ORTHO05D000132 8.5e-06 53.5 61 41.0
THA.LOC104827416 Tarenaya hassleriana HOM05D000231 ORTHO05D000132 8.5e-06 53.5 61 44.3


User provided reference genes

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