Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0365921 Helianthus annuus HOM05D000147 ORTHO05D022126 9.5e-107 390.2 198 100.0
HanXRQChr15g0465741 Helianthus annuus HOM05D000147 ORTHO05D001254 1.9e-86 322.8 168 94.6
Lsat_1_v5_gn_9_921 Lactuca sativa HOM05D000147 ORTHO05D001254 8.4e-71 270.8 168 80.4
ECA247G1106 Erigeron canadensis HOM05D000147 ORTHO05D001254 3.3e-59 232.3 176 72.2
Lsat_1_v5_gn_8_53420 Lactuca sativa HOM05D000147 ORTHO05D001254 1.6e-53 213.4 194 60.3
Dinv33035 Davidia involucrata HOM05D000147 ORTHO05D001254 1.1e-41 174.1 177 56.5
Dinv19709 Davidia involucrata HOM05D000147 ORTHO05D001254 1.2e-40 170.6 177 54.8
Solyc06g084530.3 Solanum lycopersicum HOM05D000147 ORTHO05D001254 2.2e-39 166.4 177 54.8
Sopen06g035910 Solanum pennellii HOM05D000147 ORTHO05D001254 1.9e-38 163.3 177 54.2
Lj2C1191G5 Lonicera japonica HOM05D000147 ORTHO05D001254 5.1e-36 155.2 153 56.2
Nitab4.5_0000619g0180 Nicotiana tabacum HOM05D000147 ORTHO05D001254 1.1e-35 154.1 174 51.7
Nitab4.5_0002469g0030 Nicotiana tabacum HOM05D000147 ORTHO05D001254 9.7e-35 151.0 174 52.3
Solyc09g074950.3 Solanum lycopersicum HOM05D000147 ORTHO05D001254 1.7e-34 150.2 159 54.1
CSS0010073 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D001254 4.8e-34 148.7 177 53.1
Sopen09g029770 Solanum pennellii HOM05D000147 ORTHO05D001254 8.2e-34 147.9 158 53.8
Rhsim01G0284000 Rhododendron simsii HOM05D000147 ORTHO05D001254 3.1e-33 146.0 164 53.0
CAN.G1209.29 Capsicum annuum HOM05D000147 ORTHO05D001254 4.1e-33 145.6 173 51.4
Cc01_g20700 Coffea canephora HOM05D000147 ORTHO05D001254 1.6e-32 143.7 171 52.0
Peaxi162Scf00001g04919 Petunia axillaris HOM05D000147 ORTHO05D001254 1.6e-32 143.7 129 58.9
CAN.G339.25 Capsicum annuum HOM05D000147 ORTHO05D001254 2.0e-32 143.3 190 45.8
DCAR_012389 Daucus carota HOM05D000147 ORTHO05D001254 3.2e-30 136.0 185 44.9
SalBow3G0612 Salvia bowleyana HOM05D000147 ORTHO05D001254 1.6e-29 133.7 109 59.6
Cfa005940 Carpinus fangiana HOM05D000147 ORTHO05D001254 2.3e-28 129.8 165 49.1
ClCG09G005990 Citrullus lanatus HOM05D000147 ORTHO05D001254 2.3e-28 129.8 171 43.9
Peaxi162Scf00140g01128 Petunia axillaris HOM05D000147 ORTHO05D001254 5.2e-28 128.6 229 38.0
MELO3C016015.2 Cucumis melo HOM05D000147 ORTHO05D001254 2.0e-27 126.7 171 44.4
CsaV3_7G029130 Cucumis sativus L. HOM05D000147 ORTHO05D001254 2.0e-27 126.7 171 44.4
Nn3g21450 Nelumbo nucifera HOM05D000147 ORTHO05D001254 3.3e-27 125.9 181 43.6
MSTRG.17411 Avicennia marina HOM05D000147 ORTHO05D001254 9.7e-27 124.4 104 59.6
Lalb_Chr06g0163411 Lupinus albus HOM05D000147 ORTHO05D001254 9.7e-27 124.4 169 46.7
DCAR_005802 Daucus carota HOM05D000147 ORTHO05D001254 1.3e-26 124.0 126 50.8
VMungo0720G1422 Vigna mungo HOM05D000147 ORTHO05D001254 1.3e-26 124.0 175 44.6
QL12p027230 Quercus lobata HOM05D000147 ORTHO05D001254 1.7e-26 123.6 162 45.1
TAR362G0636 Trochodendron aralioides HOM05D000147 ORTHO05D001254 1.7e-26 123.6 140 50.7
TAR633G1845 Trochodendron aralioides HOM05D000147 ORTHO05D001254 2.2e-26 123.2 176 42.0
Glyma.02G155100 Glycine max HOM05D000147 ORTHO05D001254 2.8e-26 122.9 171 45.6
CANSAT25G0997 Cannabis sativa HOM05D000147 ORTHO05D001254 4.8e-26 122.1 165 46.1
Glyma.10G019300 Glycine max HOM05D000147 ORTHO05D001254 1.1e-25 120.9 175 44.0
Phvul.007G106400 Phaseolus vulgaris HOM05D000147 ORTHO05D001254 4.1e-25 119.0 176 44.9
Nn4g25832 Nelumbo nucifera HOM05D000147 ORTHO05D001254 5.3e-25 118.6 169 43.2
SGA_v2.0_scaffold2G01403 Striga asiatica HOM05D000147 ORTHO05D001254 5.3e-25 118.6 124 51.6
TWI59G0815 Tripterygium wilfordii HOM05D000147 ORTHO05D001254 5.3e-25 118.6 179 43.0
HanXRQChr06g0163861 Helianthus annuus HOM05D000147 ORTHO05D001254 7.0e-25 118.2 172 43.6
SGA_v2.0_scaffold36G14347 Striga asiatica HOM05D000147 ORTHO05D001254 1.2e-24 117.5 174 43.1
Lj1C27G9 Lonicera japonica HOM05D000147 ORTHO05D001254 2.0e-24 116.7 205 41.0
Sed0001662 Sechium edule HOM05D000147 ORTHO05D001254 4.5e-24 115.5 167 42.5
CiPaw.07G106800 Carya illinoinensis HOM05D000147 ORTHO05D001254 5.0e-23 112.1 164 40.2
GSVIVG01027983001 Vitis vinifera HOM05D000147 ORTHO05D001254 5.0e-23 112.1 175 42.3
Duzib138G0484 Durio zibethinus HOM05D000147 ORTHO05D001254 8.5e-23 111.3 178 41.6
SalBow2G0470 Salvia bowleyana HOM05D000147 ORTHO05D001254 1.1e-22 110.9 109 54.1
ECA236G4431 Erigeron canadensis HOM05D000147 ORTHO05D001254 1.5e-22 110.5 178 37.6
Sed0027983 Sechium edule HOM05D000147 ORTHO05D001254 1.5e-22 110.5 152 40.1
Lalb_Chr02g0143221 Lupinus albus HOM05D000147 ORTHO05D001254 4.2e-22 109.0 159 43.4
Prupe.8G259000 Prunus persica HOM05D000147 ORTHO05D001254 4.2e-22 109.0 164 42.1
Cpa.g.sc9.217 Carica papaya HOM05D000147 ORTHO05D001254 9.4e-22 107.8 173 40.5
COL.COLO4_23369 Corchorus olitorius HOM05D000147 ORTHO05D001254 9.4e-22 107.8 162 45.1
Potri.002G205900 Populus trichocarpa HOM05D000147 ORTHO05D001254 1.2e-21 107.5 105 50.5
Gohir.A11G115000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 1.6e-21 107.1 180 41.7
TWI14G0377 Tripterygium wilfordii HOM05D000147 ORTHO05D001254 1.6e-21 107.1 162 45.7
Gohir.D11G120000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 2.7e-21 106.3 159 43.4
Gorai.007G128700 Gossypium raimondii HOM05D000147 ORTHO05D001254 2.7e-21 106.3 159 43.4
Sabra14G0097500 Salix brachista HOM05D000147 ORTHO05D001254 3.6e-21 105.9 131 47.3
Glyma.10G019400 Glycine max HOM05D000147 ORTHO05D001254 8.0e-21 104.8 174 42.0
Gohir.A12G131700 Gossypium hirsutum HOM05D000147 ORTHO05D001254 8.0e-21 104.8 183 39.3
Duzib211G0232 Durio zibethinus HOM05D000147 ORTHO05D001254 1.0e-20 104.4 159 41.5
Ciclev10018538m.g Citrus clementina HOM05D000147 ORTHO05D001254 2.3e-20 103.2 165 40.0
Gohir.A08G101000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 2.3e-20 103.2 161 41.6
Potri.014G131000 Populus trichocarpa HOM05D000147 ORTHO05D001254 2.3e-20 103.2 131 43.5
Lj5g0001900 Lotus japonicus HOM05D000147 ORTHO05D001254 6.8e-20 101.7 178 38.8
Actinidia24832 Actinidia chinensis HOM05D000147 ORTHO05D001254 8.8e-20 101.3 107 53.3
Migut.D00200 Erythranthe guttata HOM05D000147 ORTHO05D001254 1.2e-19 100.9 117 46.2
Gorai.004G089000 Gossypium raimondii HOM05D000147 ORTHO05D001254 1.2e-19 100.9 161 41.6
Aqoxy2G02977 Aquilegia oxysepala HOM05D000147 ORTHO05D001254 1.5e-19 100.5 162 40.7
Gohir.D08G084600 Gossypium hirsutum HOM05D000147 ORTHO05D001254 3.4e-19 99.4 161 41.6
Gohir.D12G135433 Gossypium hirsutum HOM05D000147 ORTHO05D001254 7.5e-19 98.2 184 38.6
Gorai.008G146500 Gossypium raimondii HOM05D000147 ORTHO05D001254 7.5e-19 98.2 184 38.6
AUR62008660 Chenopodium quinoa HOM05D000147 ORTHO05D001254 1.3e-18 97.4 139 43.9
Lj5g0023933 Lotus japonicus HOM05D000147 ORTHO05D001254 1.3e-18 97.4 176 40.3
Medtr1g088730 Medicago truncatula HOM05D000147 ORTHO05D001254 1.3e-18 97.4 146 40.4
MD11G1305200 Malus domestica HOM05D000147 ORTHO05D001254 1.7e-18 97.1 164 40.2
MD03G1285800 Malus domestica HOM05D000147 ORTHO05D001254 2.8e-18 96.3 162 38.3
Psat6g165720 Pisum sativum HOM05D000147 ORTHO05D001254 2.8e-18 96.3 180 39.4
TPR.G34000 Trifolium pratense HOM05D000147 ORTHO05D001254 2.8e-18 96.3 163 38.0
arahy.Tifrunner.gnm1.ann1.ALLS5L Arachis hypogaea HOM05D000147 ORTHO05D001254 3.7e-18 95.9 179 37.4
Migut.N01500 Erythranthe guttata HOM05D000147 ORTHO05D001254 3.7e-18 95.9 185 34.6
EL10Ac7g17476 Beta vulgaris HOM05D000147 ORTHO05D001254 1.8e-17 93.6 168 36.3
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 1.8e-17 93.6 135 41.5
Manes.01G217300 Manihot esculenta HOM05D000147 ORTHO05D001254 1.8e-17 93.6 131 43.5
RcHm_v2.0_Chr6g0293701 Rosa chinensis HOM05D000147 ORTHO05D001254 1.8e-17 93.6 175 38.9
Ca_10351_v3 Cicer arietinum L. HOM05D000147 ORTHO05D001254 2.4e-17 93.2 195 35.4
Medtr1g088750 Medicago truncatula HOM05D000147 ORTHO05D001254 4.1e-17 92.4 70 57.1
PSO210G7088 Papaver somniferum HOM05D000147 ORTHO05D001254 4.1e-17 92.4 168 33.9
Thecc.01G297700 Theobroma cacao HOM05D000147 ORTHO05D001254 5.4e-17 92.0 101 48.5
PSO170G5647 Papaver somniferum HOM05D000147 ORTHO05D001254 7.0e-17 91.7 155 35.5
Oeu047446.1 Olea europaea HOM05D000147 ORTHO05D001254 9.1e-17 91.3 60 66.7
Ca_10350_v3 Cicer arietinum L. HOM05D000147 ORTHO05D001254 1.6e-16 90.5 156 38.5
PGR119G0716 Punica granatum HOM05D000147 ORTHO05D001254 1.6e-16 90.5 156 41.0
Sc05g0004160 Simmondsia chinensis HOM05D000147 ORTHO05D001254 1.6e-16 90.5 183 34.4
vmacro14996 Vaccinium macrocarpon HOM05D000147 ORTHO05D001254 5.9e-16 88.6 179 40.2
Eucgr.H01157 Eucalyptus grandis HOM05D000147 ORTHO05D001254 1.0e-15 87.8 176 36.9
FvH4_2g25490 Fragaria vesca HOM05D000147 ORTHO05D001254 3.8e-15 85.9 176 37.5
FAN15G2396 Fragaria x ananassa HOM05D000147 ORTHO05D001254 3.8e-15 85.9 176 37.5
Hund18134 Selenicereus undatus HOM05D000147 ORTHO05D001254 8.5e-15 84.7 182 33.5
arahy.Tifrunner.gnm1.ann1.KU25FL Arachis hypogaea HOM05D000147 ORTHO05D001254 1.5e-14 84.0 216 33.8
Haze_04906 Corylus avellana HOM05D000147 ORTHO05D001254 1.5e-14 84.0 272 29.4
FAN24G0028 Fragaria x ananassa HOM05D000147 ORTHO05D001254 1.5e-14 84.0 176 36.9
AL1G12330 Arabidopsis lyrata HOM05D000147 ORTHO05D001254 2.5e-14 83.2 167 39.5
CSS0009819 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D022126 4.2e-14 82.4 59 62.7
AT1G02890 Arabidopsis thaliana HOM05D000147 ORTHO05D001254 1.2e-13 80.9 149 38.9
arahy.Tifrunner.gnm1.ann1.PHSJ1F Arachis hypogaea HOM05D000147 ORTHO05D001254 1.2e-13 80.9 227 32.2
Sp6g02380 Schrenkiella parvula HOM05D000147 ORTHO05D001254 1.2e-13 80.9 169 38.5
FAN27G2296 Fragaria x ananassa HOM05D000147 ORTHO05D001254 1.6e-13 80.5 176 36.9
Thhalv10028366m.g Eutrema salsugineum HOM05D000147 ORTHO05D001254 2.7e-13 79.7 170 39.4
Glyma.02G155000 Glycine max HOM05D000147 ORTHO05D001254 2.7e-13 79.7 181 32.0
Thhalv10006579m.g Eutrema salsugineum HOM05D000147 ORTHO05D001254 3.6e-13 79.3 169 38.5
A09p01930 Brassica napus HOM05D000147 ORTHO05D001254 4.7e-13 79.0 172 39.0
C09p02020 Brassica napus HOM05D000147 ORTHO05D001254 4.7e-13 79.0 172 38.4
CARHR250770 Cardamine hirsuta HOM05D000147 ORTHO05D001254 4.7e-13 79.0 171 39.2
BcaB01g02037 Brassica carinata HOM05D000147 ORTHO05D001254 6.1e-13 78.6 168 38.7
BcaNung04060 Brassica carinata HOM05D000147 ORTHO05D001254 6.1e-13 78.6 168 38.7
BcaNung04057 Brassica carinata HOM05D000147 ORTHO05D001254 1.0e-12 77.8 172 38.4
BolC9t53132H Brassica oleracea HOM05D000147 ORTHO05D001254 1.0e-12 77.8 172 38.4
AT4G02480 Arabidopsis thaliana HOM05D000147 ORTHO05D001254 1.4e-12 77.4 169 37.3
Psat6g165800 Pisum sativum HOM05D000147 ORTHO05D001254 1.4e-12 77.4 152 34.9
THA.LOC104815931 Tarenaya hassleriana HOM05D000147 ORTHO05D001254 4.0e-12 75.9 116 44.0
arahy.Tifrunner.gnm1.ann1.9V0IYD Arachis hypogaea HOM05D000147 ORTHO05D001254 5.2e-12 75.5 66 53.0
FAN20G1806 Fragaria x ananassa HOM05D000147 ORTHO05D001254 5.2e-12 75.5 176 36.4
BraA09t35843Z Brassica rapa HOM05D000147 ORTHO05D001254 8.8e-12 74.7 172 37.8
THA.LOC104801270 Tarenaya hassleriana HOM05D000147 ORTHO05D001254 8.8e-12 74.7 176 38.1
Carub.0006s3466 Capsella rubella HOM05D000147 ORTHO05D001254 1.5e-11 73.9 170 38.2
Ah.08g213180 Amaranthus hybridus HOM05D000147 ORTHO05D001254 3.4e-11 72.8 186 30.6
Nn4g21994 Nelumbo nucifera HOM05D000147 ORTHO05D001254 3.4e-11 72.8 170 28.8
Nn4g22355 Nelumbo nucifera HOM05D000147 ORTHO05D001254 3.4e-11 72.8 170 28.8
TAR622G1241 Trochodendron aralioides HOM05D000147 ORTHO05D001254 4.4e-11 72.4 112 35.7
Aa31LG5G2110 Aethionema arabicum HOM05D000147 ORTHO05D001254 5.7e-11 72.0 169 36.1
Sc11g0003270 Simmondsia chinensis HOM05D000147 ORTHO05D001254 7.5e-11 71.6 59 54.2
HPP92_017219 Vanilla planifolia HOM05D000147 ORTHO05D037833 7.5e-11 71.6 179 31.3
Nitab4.5_0015806g0010 Nicotiana tabacum HOM05D000147 ORTHO05D022126 1.3e-10 70.9 115 40.9
Lalb_Chr18g0047091 Lupinus albus HOM05D000147 ORTHO05D001254 1.7e-10 70.5 74 44.6
Sp1g01890 Schrenkiella parvula HOM05D000147 ORTHO05D001254 1.7e-10 70.5 168 36.9
BcaC05g24630 Brassica carinata HOM05D000147 ORTHO05D001254 2.2e-10 70.1 108 41.7
Nitab4.5_0024335g0010 Nicotiana tabacum HOM05D000147 ORTHO05D022126 3.7e-10 69.3 99 45.5
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 4.9e-10 68.9 176 33.0
A09p68470 Brassica napus HOM05D000147 ORTHO05D001254 6.3e-10 68.6 78 52.6
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 6.3e-10 68.6 172 33.1
BolC5t28934H Brassica oleracea HOM05D000147 ORTHO05D001254 6.3e-10 68.6 172 33.1
Nitab4.5_0009558g0020 Nicotiana tabacum HOM05D000147 ORTHO05D001254 1.1e-09 67.8 54 59.3
BraA09t42190Z Brassica rapa HOM05D000147 ORTHO05D001254 1.4e-09 67.4 78 51.3
CSS0006683 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D022126 1.4e-09 67.4 109 43.1
Lalb_Chr07g0183371 Lupinus albus HOM05D000147 ORTHO05D001254 1.4e-09 67.4 203 25.1
BcaB03g15754 Brassica carinata HOM05D000147 ORTHO05D014960 1.8e-09 67.0 64 54.7
BcaC07g42297 Brassica carinata HOM05D000147 ORTHO05D001254 1.8e-09 67.0 169 34.9
CARHR002240 Cardamine hirsuta HOM05D000147 ORTHO05D001254 1.8e-09 67.0 167 34.7
Atru.chr5.1173 Acer truncatum HOM05D000147 ORTHO05D001254 2.4e-09 66.6 159 34.0
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.4e-09 66.6 176 32.4
Zm00001eb165420 Zea mays HOM05D000147 ORTHO05D001254 2.4e-09 66.6 71 45.1
Gohir.D07G056000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 3.1e-09 66.2 136 29.4
SEGI_02336 Sequoiadendron giganteum HOM05D000147 ORTHO05D001254 4.1e-09 65.9 115 34.8
PSO832G1024 Papaver somniferum HOM05D000147 ORTHO05D001254 5.4e-09 65.5 86 37.2
BcaB01g02461 Brassica carinata HOM05D000147 ORTHO05D001254 9.2e-09 64.7 64 50.0
THA.LOC104825975 Tarenaya hassleriana HOM05D000147 ORTHO05D001254 9.2e-09 64.7 176 38.1
Zm00001eb115830 Zea mays HOM05D000147 ORTHO05D001254 9.2e-09 64.7 69 46.4
ATR0561G066 Amborella trichopoda HOM05D000147 ORTHO05D001254 1.6e-08 63.9 138 32.6
PSO210G5323 Papaver somniferum HOM05D000147 ORTHO05D001254 1.6e-08 63.9 86 36.0
BcaC01g06754 Brassica carinata HOM05D000147 ORTHO05D001254 2.7e-08 63.2 181 34.3
A03p31040 Brassica napus HOM05D000147 ORTHO05D001254 2.7e-08 63.2 167 34.7
BolC3t16072H Brassica oleracea HOM05D000147 ORTHO05D001254 2.7e-08 63.2 181 34.3
BraA03t12281Z Brassica rapa HOM05D000147 ORTHO05D001254 2.7e-08 63.2 167 34.7
Aqoxy5G00728 Aquilegia oxysepala HOM05D000147 ORTHO05D001254 3.5e-08 62.8 143 30.1
C03p37830 Brassica napus HOM05D000147 ORTHO05D001254 3.5e-08 62.8 181 34.3
BraA02t07462Z Brassica rapa HOM05D000147 ORTHO05D001254 4.5e-08 62.4 167 34.1
Dinv11160 Davidia involucrata HOM05D000147 ORTHO05D001254 5.9e-08 62.0 111 33.3
Sed0024140 Sechium edule HOM05D000147 ORTHO05D001254 5.9e-08 62.0 188 30.3
Dinv04876 Davidia involucrata HOM05D000147 ORTHO05D001254 7.7e-08 61.6 111 33.3
Mapoly0024s0066 Marchantia polymorpha HOM05D000147 ORTHO05D001254 7.7e-08 61.6 147 29.3
BcaC03g16129 Brassica carinata HOM05D000147 ORTHO05D001254 1.0e-07 61.2 64 50.0
BolC2t09916H Brassica oleracea HOM05D000147 ORTHO05D001254 1.0e-07 61.2 64 50.0
Gohir.A12G188766 Gossypium hirsutum HOM05D000147 ORTHO05D022764 1.3e-07 60.8 82 32.9
Lalb_Chr13g0297301 Lupinus albus HOM05D000147 ORTHO05D001254 8.6e-07 58.2 155 27.1
Ah.11g045410 Amaranthus hybridus HOM05D000147 ORTHO05D001254 1.1e-06 57.8 155 29.0
BcaC05g24573 Brassica carinata HOM05D000147 ORTHO05D014960 1.1e-06 57.8 157 31.2
Sc04g0000710 Simmondsia chinensis HOM05D000147 ORTHO05D001254 1.5e-06 57.4 69 39.1
AL1G56440 Arabidopsis lyrata HOM05D000147 ORTHO05D001254 1.9e-06 57.0 126 34.1
CDE05G3034 Ceratophyllum demersum HOM05D000147 ORTHO05D001254 2.5e-06 56.6 80 35.0
Oeu047447.1 Olea europaea HOM05D059011 ORTHO05D022126 7.3e-06 55.1 114 39.5


User provided reference genes

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