Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 1.1e-274 949.5 525 100.0
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 8.0e-137 491.5 626 55.1
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 3.9e-123 446.0 627 51.7
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 6.9e-112 408.7 633 49.8
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 5.7e-82 309.3 541 46.0
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 1.5e-79 301.2 709 39.2
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.9e-78 297.0 629 43.6
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 9.3e-77 292.0 682 41.1
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.1e-74 285.0 721 38.1
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.9e-74 284.3 642 42.7
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 2.6e-71 273.9 688 40.6
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 8.5e-70 268.9 661 40.2
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 5.5e-69 266.2 612 40.2
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 3.6e-68 263.5 701 36.5
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 2.3e-67 260.8 631 38.7
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 3.9e-67 260.0 606 38.6
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 5.7e-66 256.1 644 39.9
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.3e-65 255.0 627 39.4
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 4.8e-65 253.1 723 36.7
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.8e-64 251.1 647 40.2
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 4.5e-63 246.5 576 38.7
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 5.9e-63 246.1 614 38.1
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 1.3e-62 245.0 677 36.8
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 3.8e-62 243.4 637 39.6
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 5.0e-62 243.0 727 34.9
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.1e-60 237.7 628 37.6
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 8.8e-59 232.3 608 37.0
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 2.0e-58 231.1 631 39.1
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 5.7e-58 229.6 575 37.4
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.7e-57 228.0 608 37.0
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.7e-57 228.0 608 37.0
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 2.2e-57 227.6 545 40.2
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.8e-57 227.3 608 36.8
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 3.7e-57 226.9 680 37.5
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 3.7e-57 226.9 594 37.0
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 2.4e-56 224.2 614 38.4
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 3.5e-55 220.3 624 35.4
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 3.5e-55 220.3 631 36.5
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 1.3e-54 218.4 576 37.0
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 6.5e-54 216.1 685 35.2
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 5.5e-53 213.0 651 35.0
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 1.2e-52 211.8 760 33.3
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.2e-52 211.8 627 36.0
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.6e-52 211.5 669 34.4
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 1.6e-52 211.5 650 35.5
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 6.1e-52 209.5 688 37.4
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 6.1e-52 209.5 728 32.6
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.5e-50 204.9 731 32.7
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.0e-50 204.5 746 33.2
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 2.6e-50 204.1 612 35.9
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 4.4e-50 203.4 683 35.0
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 5.7e-50 203.0 674 34.6
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 9.7e-50 202.2 638 35.7
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.7e-49 201.4 673 32.4
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.7e-49 201.4 600 36.3
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 1.7e-49 201.4 611 35.5
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.2e-49 201.1 580 35.2
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 3.7e-49 200.3 620 34.7
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.4e-48 197.6 712 32.0
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 3.1e-48 197.2 583 35.3
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 2.9e-46 190.7 614 33.9
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 6.5e-46 189.5 497 38.8
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.5e-45 188.3 660 32.7
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 3.2e-45 187.2 574 36.6
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 4.2e-45 186.8 598 37.1
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 2.7e-44 184.1 751 32.0
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 2.7e-44 184.1 616 34.9
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.8e-43 181.4 571 35.9
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 3.0e-43 180.6 684 32.3
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 5.2e-43 179.9 556 36.0
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.0e-42 177.9 504 36.3
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 2.0e-42 177.9 605 34.0
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 3.4e-42 177.2 656 32.5
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 4.4e-42 176.8 610 34.6
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 4.4e-42 176.8 664 32.4
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 5.7e-42 176.4 663 32.6
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 7.0e-40 169.5 591 35.5
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 9.1e-40 169.1 637 32.5
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 9.1e-40 169.1 607 32.9
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.6e-39 168.3 588 34.0
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 2.7e-39 167.5 666 31.5
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.5e-39 167.2 512 35.2
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 5.9e-39 166.4 486 36.2
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 3.8e-38 163.7 659 33.1
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 6.5e-38 162.9 514 37.4
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 6.5e-38 162.9 584 33.0
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.1e-37 162.2 415 38.6
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.5e-37 161.0 667 31.6
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 2.5e-37 161.0 558 36.9
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.5e-37 161.0 604 34.4
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 4.2e-37 160.2 491 36.0
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 2.1e-36 157.9 662 31.9
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 6.1e-36 156.4 538 36.2
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.4e-35 155.2 487 35.3
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 2.3e-35 154.5 568 34.5
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.0e-35 154.1 533 34.5
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 5.2e-35 153.3 643 32.8
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 5.2e-35 153.3 500 33.6
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 6.8e-35 152.9 371 38.3
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.7e-33 148.3 635 31.2
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 2.2e-33 147.9 527 34.2
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.2e-33 147.9 601 32.3
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 3.7e-33 147.1 735 30.5
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 3.7e-33 147.1 543 32.8
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.9e-33 146.7 600 32.5
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 1.4e-32 145.2 569 32.9
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 4.1e-32 143.7 616 31.0
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 4.5e-31 140.2 623 31.6
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 5.9e-31 139.8 606 32.3
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 1.0e-30 139.0 583 32.6
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 1.7e-30 138.3 591 30.5
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.3e-30 137.9 608 31.2
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 6.6e-30 136.3 588 30.6
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 1.9e-29 134.8 615 31.5
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 9.5e-29 132.5 611 30.0
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.6e-28 131.7 597 31.5
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.6e-28 130.6 645 30.7
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 6.1e-28 129.8 503 33.2
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.0e-27 129.0 652 29.6
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.3e-27 127.9 603 31.0
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 3.0e-27 127.5 266 39.5
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.2e-26 125.6 408 34.6
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.5e-26 125.2 610 30.7
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 2.0e-26 124.8 617 31.4
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 2.6e-26 124.4 500 32.6
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 3.4e-26 124.0 527 30.0
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 4.4e-26 123.6 603 31.2
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 4.4e-26 123.6 384 33.1
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 9.8e-26 122.5 657 29.7
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.1e-24 119.0 488 32.2
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 1.4e-24 118.6 365 37.5
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 1.4e-24 118.6 721 29.5
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 2.4e-24 117.9 363 34.2
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 4.6e-23 113.6 596 29.9
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 1.0e-22 112.5 625 30.1
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.7e-22 111.7 239 41.4
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 8.6e-22 109.4 630 29.8
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.5e-21 108.6 615 27.8
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 4.3e-21 107.1 391 34.8
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 5.2e-19 100.1 596 28.0
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 2.0e-18 98.2 643 28.8
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 4.4e-18 97.1 375 33.9
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 7.5e-18 96.3 399 31.8
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 7.5e-18 96.3 399 31.8
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 1.1e-16 92.4 279 36.9
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 2.4e-16 91.3 398 33.2
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 9.2e-16 89.4 422 32.2
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 7.8e-15 86.3 217 35.9
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 2.3e-14 84.7 516 31.0
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 3.0e-14 84.3 384 32.3
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.5e-13 82.0 94 56.4
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 2.1e-12 78.2 386 32.1
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 5.2e-11 73.6 102 51.0
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.0e-10 71.6 168 38.7
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.6e-10 71.2 356 30.6
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 4.4e-10 70.5 77 61.0
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 1.7e-09 68.6 248 33.5
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 3.7e-09 67.4 535 28.8
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 6.4e-09 66.6 138 39.1
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.1e-08 65.9 310 28.4
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 1.9e-08 65.1 122 42.6
BcaB04g20778 Brassica carinata HOM05D011073 ORTHO05D013800 7.1e-08 63.2 176 36.9
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.6e-07 62.0 485 28.2
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 4.6e-07 60.5 78 50.0
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 7.8e-07 59.7 102 42.2
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 6.6e-06 56.6 58 60.3


User provided reference genes

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