Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 6.6e-193 677.2 338 100.0
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 1.3e-143 513.5 284 87.7
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 6.3e-127 458.0 292 77.1
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 5.6e-123 444.9 284 76.4
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 4.9e-119 431.8 293 71.7
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 1.3e-116 423.7 299 67.2
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 2.8e-114 416.0 293 66.2
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 3.6e-114 415.6 291 67.7
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 6.8e-113 411.4 312 63.8
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 6.8e-113 411.4 309 64.1
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 1.2e-112 410.6 290 65.9
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 2.0e-112 409.8 309 63.8
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 3.7e-111 405.6 283 69.3
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 6.4e-111 404.8 308 63.6
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 1.9e-110 403.3 295 67.5
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 3.2e-110 402.5 291 66.3
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 3.2e-110 402.5 304 63.5
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 3.2e-110 402.5 308 63.0
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 9.2e-110 401.0 289 65.4
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 9.2e-110 401.0 302 63.6
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.0e-109 399.8 307 63.8
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.8e-109 397.9 305 63.0
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 1.3e-108 397.1 309 64.1
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 1.3e-108 397.1 306 63.7
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 3.0e-108 396.0 308 62.3
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 3.0e-108 396.0 293 66.6
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 5.0e-108 395.2 312 62.8
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 5.6e-107 391.7 308 64.0
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 2.8e-106 389.4 307 61.2
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 2.8e-106 389.4 296 65.2
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 6.2e-106 388.3 310 61.0
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 1.4e-105 387.1 309 61.2
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 2.3e-105 386.3 279 66.7
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 4.0e-105 385.6 312 60.9
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 8.9e-105 384.4 309 60.2
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 2.6e-104 382.9 301 62.1
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 3.4e-104 382.5 303 61.4
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 3.4e-104 382.5 312 59.6
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 4.4e-104 382.1 306 60.1
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 5.8e-104 381.7 309 59.2
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 7.5e-104 381.3 289 64.0
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 2.2e-103 379.8 309 59.2
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 3.7e-103 379.0 311 60.5
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 4.9e-103 378.6 309 60.2
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 4.9e-103 378.6 316 58.5
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 6.4e-103 378.3 318 59.7
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 8.3e-103 377.9 304 60.9
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 1.4e-102 377.1 309 60.5
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 1.4e-102 377.1 300 61.7
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.9e-102 376.7 303 60.1
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.4e-102 376.3 274 67.9
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 3.2e-102 375.9 300 61.3
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 3.2e-102 375.9 281 65.8
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.2e-102 375.9 274 67.9
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 3.2e-102 375.9 295 63.1
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 9.2e-102 374.4 303 60.1
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 9.2e-102 374.4 309 59.9
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 9.2e-102 374.4 274 67.9
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 1.2e-101 374.0 311 59.5
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 2.7e-101 372.9 305 60.0
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 2.7e-101 372.9 303 59.4
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.7e-101 372.9 274 67.5
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 4.6e-101 372.1 328 57.0
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 4.6e-101 372.1 323 58.2
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 6.0e-101 371.7 305 61.0
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 7.8e-101 371.3 299 61.2
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.8e-101 371.3 273 67.4
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.8e-101 371.3 273 67.4
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 1.0e-100 370.9 298 60.7
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.0e-100 370.9 308 60.4
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 1.7e-100 370.2 296 63.5
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.7e-100 370.2 301 63.1
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 2.3e-100 369.8 312 58.7
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 5.1e-100 368.6 274 66.8
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.6e-100 367.9 274 66.8
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.6e-100 367.9 274 66.8
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 8.6e-100 367.9 303 60.4
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-99 367.5 274 66.8
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 1.9e-99 366.7 296 61.1
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 7.3e-99 364.8 302 58.6
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 7.3e-99 364.8 305 58.7
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 9.5e-99 364.4 281 61.2
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 2.1e-98 363.2 305 57.7
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 2.8e-98 362.8 303 57.8
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.8e-98 362.8 308 58.4
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 8.1e-98 361.3 288 60.4
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.1e-97 360.9 288 62.2
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 3.1e-97 359.4 303 60.7
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 8.9e-97 357.8 291 60.5
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 4.4e-96 355.5 283 59.0
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.8e-96 355.1 275 65.8
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 5.8e-96 355.1 305 55.7
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 1.7e-95 353.6 288 60.8
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 5.4e-94 348.6 280 60.0
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.2e-93 347.4 296 56.1
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 1.6e-93 347.1 292 58.9
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 7.8e-93 344.7 351 50.7
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 7.8e-93 344.7 289 59.9
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 3.0e-92 342.8 289 59.9
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 6.6e-92 341.7 279 60.2
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.5e-91 340.5 295 54.9
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 4.7e-90 335.5 274 59.9
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.1e-89 334.3 279 59.1
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 5.2e-89 332.0 289 58.5
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 1.2e-88 330.9 275 58.5
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 3.8e-87 325.9 279 57.7
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 3.8e-87 325.9 279 57.7
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 6.4e-87 325.1 332 50.0
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 8.4e-87 324.7 281 57.7
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.9e-86 323.6 279 55.9
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 3.2e-86 322.8 309 54.0
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 9.3e-86 321.2 280 57.5
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 9.3e-86 321.2 280 57.5
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 1.2e-85 320.9 281 57.3
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 1.2e-85 320.9 258 61.2
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 3.5e-85 319.3 228 64.9
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 1.0e-84 317.8 307 55.4
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 1.4e-81 307.4 289 51.6
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.2e-80 304.3 215 65.1
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.6e-80 301.6 305 53.1
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.6e-80 301.6 208 69.2
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 6.4e-79 298.5 277 50.9
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 5.4e-78 295.4 310 45.5
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 9.3e-78 294.7 316 50.3
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 2.3e-76 290.0 293 50.9
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 2.8e-74 283.1 311 46.6
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 3.7e-74 282.7 183 70.5
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 6.0e-69 265.4 310 45.5
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 8.7e-68 261.5 230 56.5
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 4.3e-67 259.2 196 61.7
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 6.9e-65 251.9 225 54.7
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 6.7e-60 235.3 150 70.7
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 4.8e-50 202.6 144 63.2
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 6.3e-50 202.2 316 40.2
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 1.2e-48 198.0 171 50.9
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 2.6e-40 170.2 132 66.7
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 1.3e-39 167.9 158 58.9
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 4.7e-37 159.5 224 40.2
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 1.2e-29 134.8 203 39.9
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 1.3e-26 124.8 262 32.1
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 9.1e-25 118.6 306 30.1
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 1.1e-22 111.7 228 32.5
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.6e-21 106.7 77 55.8
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 6.8e-20 102.4 293 26.6
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 1.5e-19 101.3 106 53.8
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 7.0e-17 92.4 298 25.5
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 7.7e-16 89.0 51 72.5
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.9e-14 84.3 71 54.9
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 4.0e-12 76.6 202 34.2
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 6.8e-12 75.9 52 67.3
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.2e-11 75.1 55 67.3
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 6.3e-10 69.3 283 25.4
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 8.3e-10 68.9 271 24.7
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.8e-09 67.8 60 58.3
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 1.8e-09 67.8 191 30.9
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 2.4e-09 67.4 164 31.7
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 9.2e-09 65.5 50 52.0
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 9.2e-09 65.5 78 44.9
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 1.6e-08 64.7 281 23.5
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 2.7e-08 63.9 282 24.1
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 5.9e-08 62.8 195 27.7
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 5.9e-08 62.8 269 23.8
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 7.8e-08 62.4 285 24.9
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 7.8e-08 62.4 270 23.7
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 1.3e-07 61.6 269 24.2
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 3.8e-07 60.1 192 28.6
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 6.6e-07 59.3 192 31.8
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 6.6e-07 59.3 211 26.1
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 6.6e-07 59.3 213 26.8
Glyma.09G113200 Glycine max HOM05D004773 ORTHO05D005943 8.6e-07 58.9 49 51.0
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 1.1e-06 58.5 213 26.8
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 1.9e-06 57.8 275 25.5
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 2.5e-06 57.4 283 24.4
Cfa027142 Carpinus fangiana HOM05D004773 ORTHO05D005943 2.5e-06 57.4 203 25.1
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 7.3e-06 55.8 53 47.2


User provided reference genes

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