Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0364191 Helianthus annuus HOM05D002373 ORTHO05D005805 4.5e-180 634.4 309 100.0
ECA240G3893 Erigeron canadensis HOM05D002373 ORTHO05D005805 1.9e-101 373.2 403 52.9
CSS0014083 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 6.7e-91 338.2 419 50.8
CSS0015785 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 6.7e-91 338.2 419 50.8
vmacro09528 Vaccinium macrocarpon HOM05D002373 ORTHO05D005805 1.1e-90 337.4 423 50.6
ECA234G1789 Erigeron canadensis HOM05D002373 ORTHO05D005805 1.8e-88 330.1 419 48.7
HanXRQChr12g0361121 Helianthus annuus HOM05D002373 ORTHO05D005805 9.0e-88 327.8 396 50.3
Lj8A155T98 Lonicera japonica HOM05D002373 ORTHO05D005805 1.1e-85 320.9 420 47.9
Nitab4.5_0001241g0050 Nicotiana tabacum HOM05D002373 ORTHO05D005805 1.1e-85 320.9 420 47.4
Peaxi162Scf00069g00161 Petunia axillaris HOM05D002373 ORTHO05D005805 7.2e-85 318.2 409 48.7
Manes.15G087600 Manihot esculenta HOM05D002373 ORTHO05D005805 2.7e-84 316.2 434 47.7
Migut.M00800 Erythranthe guttata HOM05D002373 ORTHO05D005805 7.9e-84 314.7 417 47.5
Sabra11G0103400 Salix brachista HOM05D002373 ORTHO05D005805 2.3e-83 313.2 435 45.7
Dinv00353 Davidia involucrata HOM05D002373 ORTHO05D005805 3.9e-83 312.4 433 46.7
Dinv14923 Davidia involucrata HOM05D002373 ORTHO05D005805 3.9e-83 312.4 433 46.7
Potri.011G118500 Populus trichocarpa HOM05D002373 ORTHO05D005805 8.8e-83 311.2 434 45.9
PGSC0003DMG400012444 Solanum tuberosum HOM05D002373 ORTHO05D005805 8.8e-83 311.2 417 46.5
DCAR_013112 Daucus carota HOM05D002373 ORTHO05D005805 1.1e-82 310.8 422 47.2
SalBow6G5097 Salvia bowleyana HOM05D002373 ORTHO05D005805 1.1e-82 310.8 406 46.6
Medtr8g463270 Medicago truncatula HOM05D002373 ORTHO05D005805 1.5e-82 310.5 418 47.1
CSS0025198 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 2.0e-82 310.1 424 46.9
Sopen07g031270 Solanum pennellii HOM05D002373 ORTHO05D005805 2.0e-82 310.1 417 46.3
Atru.chr2.2485 Acer truncatum HOM05D002373 ORTHO05D005805 2.5e-82 309.7 433 45.7
CSS0013354 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D005805 3.3e-82 309.3 424 46.5
Ciclev10007467m.g Citrus clementina HOM05D002373 ORTHO05D005805 3.3e-82 309.3 419 47.5
Lsat_1_v5_gn_5_128020 Lactuca sativa HOM05D002373 ORTHO05D005805 3.3e-82 309.3 391 50.4
Hma1.2p1_0458F.1_g157050 Hydrangea macrophylla HOM05D002373 ORTHO05D005805 4.3e-82 308.9 399 48.9
Solyc07g063080.4 Solanum lycopersicum HOM05D002373 ORTHO05D005805 4.3e-82 308.9 423 46.6
CAN.G162.52 Capsicum annuum HOM05D002373 ORTHO05D005805 5.7e-82 308.5 419 46.3
Eucgr.F03311 Eucalyptus grandis HOM05D002373 ORTHO05D005805 7.4e-82 308.1 421 45.8
Glyma.12G152100 Glycine max HOM05D002373 ORTHO05D005805 1.3e-81 307.4 408 47.1
COL.COLO4_27181 Corchorus olitorius HOM05D002373 ORTHO05D005805 2.2e-81 306.6 422 46.4
TPR.G22533 Trifolium pratense HOM05D002373 ORTHO05D005805 2.2e-81 306.6 418 46.4
Oeu024908.1 Olea europaea HOM05D002373 ORTHO05D005805 2.8e-81 306.2 419 46.8
Nitab4.5_0001336g0070 Nicotiana tabacum HOM05D002373 ORTHO05D005805 3.7e-81 305.8 424 46.0
SalBow6G1433 Salvia bowleyana HOM05D002373 ORTHO05D005805 1.1e-80 304.3 427 44.3
Actinidia18767 Actinidia chinensis HOM05D002373 ORTHO05D005805 1.4e-80 303.9 409 48.2
Cc05_g11960 Coffea canephora HOM05D002373 ORTHO05D005805 1.4e-80 303.9 432 44.7
TWI38G2145 Tripterygium wilfordii HOM05D002373 ORTHO05D005805 1.8e-80 303.5 422 46.4
Psat4g163960 Pisum sativum HOM05D002373 ORTHO05D005805 2.4e-80 303.1 414 46.1
Thecc.07G091400 Theobroma cacao HOM05D002373 ORTHO05D005805 3.1e-80 302.8 422 47.2
Duzib213G0111 Durio zibethinus HOM05D002373 ORTHO05D005805 4.1e-80 302.4 434 44.9
Lalb_Chr03g0030661 Lupinus albus HOM05D002373 ORTHO05D005805 6.9e-80 301.6 417 44.8
QL08p022123 Quercus lobata HOM05D002373 ORTHO05D005805 6.9e-80 301.6 416 46.2
Ca_23054_v3 Cicer arietinum L. HOM05D002373 ORTHO05D005805 9.1e-80 301.2 419 46.3
Nn1g04126 Nelumbo nucifera HOM05D002373 ORTHO05D005805 9.1e-80 301.2 437 44.4
Phvul.011G158800 Phaseolus vulgaris HOM05D002373 ORTHO05D005805 1.2e-79 300.8 411 46.0
TAR627G0461 Trochodendron aralioides HOM05D002373 ORTHO05D005805 5.9e-79 298.5 427 45.9
Gohir.A01G063200 Gossypium hirsutum HOM05D002373 ORTHO05D005805 1.0e-78 297.7 434 44.5
Aqoxy4G00738 Aquilegia oxysepala HOM05D002373 ORTHO05D005805 1.7e-78 297.0 431 44.3
MSTRG.15235 Avicennia marina HOM05D002373 ORTHO05D005805 1.7e-78 297.0 431 43.2
Cfa020575 Carpinus fangiana HOM05D002373 ORTHO05D005805 1.7e-78 297.0 420 45.5
AL1G61500 Arabidopsis lyrata HOM05D002373 ORTHO05D005805 2.2e-78 296.6 415 45.3
Gohir.D01G049600 Gossypium hirsutum HOM05D002373 ORTHO05D005805 2.2e-78 296.6 434 45.2
Gorai.002G069500 Gossypium raimondii HOM05D002373 ORTHO05D005805 2.2e-78 296.6 434 45.2
RcHm_v2.0_Chr5g0033231 Rosa chinensis HOM05D002373 ORTHO05D005805 2.2e-78 296.6 415 45.5
Lj3g0007605 Lotus japonicus HOM05D002373 ORTHO05D005805 3.8e-78 295.8 414 45.7
PGR031G0335 Punica granatum HOM05D002373 ORTHO05D005805 6.5e-78 295.0 422 44.5
BcaC08g44046 Brassica carinata HOM05D002373 ORTHO05D005805 8.5e-78 294.7 419 44.9
FvH4_3g19810 Fragaria vesca HOM05D002373 ORTHO05D005805 1.1e-77 294.3 414 45.2
FAN11G0806 Fragaria x ananassa HOM05D002373 ORTHO05D005805 1.9e-77 293.5 414 45.2
VMungo1127G0771 Vigna mungo HOM05D002373 ORTHO05D005805 2.5e-77 293.1 411 46.0
Sp1g39690 Schrenkiella parvula HOM05D002373 ORTHO05D005805 3.2e-77 292.7 419 44.9
Glyma.06G240400 Glycine max HOM05D002373 ORTHO05D005805 4.2e-77 292.4 398 46.0
Aa31LG10G1990 Aethionema arabicum HOM05D002373 ORTHO05D005805 5.5e-77 292.0 416 45.7
arahy.Tifrunner.gnm1.ann1.YQ4YNY Arachis hypogaea HOM05D002373 ORTHO05D005805 5.5e-77 292.0 428 44.9
CiPaw.12G118900 Carya illinoinensis HOM05D002373 ORTHO05D005805 5.5e-77 292.0 432 44.4
BcaB02g10929 Brassica carinata HOM05D002373 ORTHO05D005805 7.2e-77 291.6 427 44.3
PSO832G3381 Papaver somniferum HOM05D002373 ORTHO05D005805 7.2e-77 291.6 425 45.4
Haze_09436 Corylus avellana HOM05D002373 ORTHO05D005805 9.4e-77 291.2 431 43.4
MD03G1228500 Malus domestica HOM05D002373 ORTHO05D005805 9.4e-77 291.2 416 45.4
Sc01g0008920 Simmondsia chinensis HOM05D002373 ORTHO05D005805 9.4e-77 291.2 399 45.6
HanXRQChr10g0305641 Helianthus annuus HOM05D002373 ORTHO05D005805 1.2e-76 290.8 393 46.3
arahy.Tifrunner.gnm1.ann1.7QC79Z Arachis hypogaea HOM05D002373 ORTHO05D005805 1.6e-76 290.4 420 44.5
Prupe.4G180200 Prunus persica HOM05D002373 ORTHO05D005805 1.6e-76 290.4 417 44.4
MSTRG.12902 Avicennia marina HOM05D002373 ORTHO05D005805 2.7e-76 289.7 419 43.7
C06p14470 Brassica napus HOM05D002373 ORTHO05D005805 3.6e-76 289.3 443 43.1
Carub.0001s4230 Capsella rubella HOM05D002373 ORTHO05D005805 4.7e-76 288.9 414 44.4
PSO210G2728 Papaver somniferum HOM05D002373 ORTHO05D005805 4.7e-76 288.9 425 44.9
AT1G53140 Arabidopsis thaliana HOM05D002373 ORTHO05D005805 6.1e-76 288.5 415 44.6
Thhalv10011245m.g Eutrema salsugineum HOM05D002373 ORTHO05D005805 6.1e-76 288.5 415 44.1
Gohir.A04G032200 Gossypium hirsutum HOM05D002373 ORTHO05D005805 6.1e-76 288.5 420 45.0
BolC6t36627H Brassica oleracea HOM05D002373 ORTHO05D005805 7.9e-76 288.1 443 43.8
Gohir.D05G352400 Gossypium hirsutum HOM05D002373 ORTHO05D005805 1.0e-75 287.7 420 45.7
Gorai.009G384500 Gossypium raimondii HOM05D002373 ORTHO05D005805 1.4e-75 287.3 420 45.5
AUR62019435 Chenopodium quinoa HOM05D002373 ORTHO05D005805 3.9e-75 285.8 421 43.9
AUR62039199 Chenopodium quinoa HOM05D002373 ORTHO05D005805 3.9e-75 285.8 420 43.3
A05p18610 Brassica napus HOM05D002373 ORTHO05D005805 8.8e-75 284.6 443 43.6
BraA05t20752Z Brassica rapa HOM05D002373 ORTHO05D005805 8.8e-75 284.6 443 43.6
CARHR043360 Cardamine hirsuta HOM05D002373 ORTHO05D005805 2.0e-74 283.5 408 44.6
Sed0011872 Sechium edule HOM05D002373 ORTHO05D005805 2.0e-74 283.5 410 45.4
CiPaw.11G170300 Carya illinoinensis HOM05D002373 ORTHO05D005805 2.6e-74 283.1 423 44.0
ATR0737G089 Amborella trichopoda HOM05D002373 ORTHO05D005805 5.7e-74 282.0 405 43.7
Hund22839 Selenicereus undatus HOM05D002373 ORTHO05D005805 4.8e-73 278.9 421 42.0
THA.LOC104818083 Tarenaya hassleriana HOM05D002373 ORTHO05D005805 1.1e-72 277.7 415 43.6
Zm00001eb153090 Zea mays HOM05D002373 ORTHO05D005805 1.4e-72 277.3 411 43.8
CANSAT56G0489 Cannabis sativa HOM05D002373 ORTHO05D005805 1.8e-72 276.9 423 43.7
FAN21G3426 Fragaria x ananassa HOM05D002373 ORTHO05D005805 1.8e-72 276.9 414 45.4
Os01g0748000 Oryza sativa ssp. japonica HOM05D002373 ORTHO05D005805 2.4e-72 276.6 411 43.1
HanXRQChr10g0302701 Helianthus annuus HOM05D002373 ORTHO05D005805 5.3e-72 275.4 381 44.6
Sed0015726 Sechium edule HOM05D002373 ORTHO05D005805 5.3e-72 275.4 418 44.3
MELO3C016695.2 Cucumis melo HOM05D002373 ORTHO05D005805 1.0e-70 271.2 443 42.0
Ah.04g164800 Amaranthus hybridus HOM05D002373 ORTHO05D005805 1.3e-70 270.8 409 43.0
SGA_v2.0_scaffold73G24259 Striga asiatica HOM05D002373 ORTHO05D005805 1.7e-70 270.4 410 43.4
CDE10G0260 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 2.2e-70 270.0 385 43.9
CDE10G1360 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 2.9e-70 269.6 315 49.5
FAN16G1089 Fragaria x ananassa HOM05D002373 ORTHO05D005805 6.5e-70 268.5 426 42.5
PSO782G4223 Papaver somniferum HOM05D002373 ORTHO05D005805 1.6e-68 263.8 420 42.9
SHI19230 Sapria himalayana HOM05D002373 ORTHO05D005805 1.6e-68 263.8 425 40.0
ClCG11G018040 Citrullus lanatus HOM05D002373 ORTHO05D005805 3.6e-68 262.7 443 41.8
Ah.06g184400 Amaranthus hybridus HOM05D002373 ORTHO05D005805 6.1e-68 261.9 411 42.3
BraA01t02609Z Brassica rapa HOM05D002373 ORTHO05D005805 8.0e-68 261.5 416 43.5
Zm00001eb371030 Zea mays HOM05D002373 ORTHO05D005805 1.0e-67 261.2 411 41.1
FAN25G1482 Fragaria x ananassa HOM05D002373 ORTHO05D005805 1.4e-67 260.8 417 42.7
CDE10G0423 Ceratophyllum demersum HOM05D002373 ORTHO05D005805 5.2e-67 258.8 331 47.1
EL10Ac4g08196 Beta vulgaris HOM05D002373 ORTHO05D005805 2.6e-66 256.5 396 44.4
A01p26800 Brassica napus HOM05D002373 ORTHO05D005805 7.5e-66 255.0 440 40.7
unitig_26.g9526 Utricularia gibba HOM05D002373 ORTHO05D005805 3.7e-65 252.7 410 42.0
BcaB02g10931 Brassica carinata HOM05D002373 ORTHO05D005805 5.3e-64 248.8 402 43.5
Lalb_Chr01g0016821 Lupinus albus HOM05D002373 ORTHO05D005805 9.4e-61 238.0 394 40.6
BcaB02g10932 Brassica carinata HOM05D002373 ORTHO05D005805 3.6e-60 236.1 359 44.8
CsaV3_4G033660 Cucumis sativus L. HOM05D002373 ORTHO05D005805 1.4e-59 234.2 402 41.5
SEGI_09406 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 2.2e-57 226.9 391 37.3
HanXRQChr08g0223271 Helianthus annuus HOM05D002373 ORTHO05D005805 1.1e-53 214.5 156 71.8
Lsat_1_v5_gn_9_97921 Lactuca sativa HOM05D002373 ORTHO05D005805 7.2e-53 211.8 319 43.9
HPP92_006380 Vanilla planifolia HOM05D002373 ORTHO05D005805 5.7e-50 202.2 178 60.7
Cpa.g.sc80.74 Carica papaya HOM05D002373 ORTHO05D005805 7.5e-50 201.8 355 40.6
SMO364G0144 Selaginella moellendorffii HOM05D002373 ORTHO05D005805 4.9e-49 199.1 389 35.0
BcaC06g33075 Brassica carinata HOM05D002373 ORTHO05D005805 2.4e-48 196.8 238 48.3
HanXRQChr10g0302211 Helianthus annuus HOM05D002373 ORTHO05D005805 8.9e-43 178.3 218 49.1
GSVIVG01014318001 Vitis vinifera HOM05D002373 ORTHO05D005805 1.5e-42 177.6 149 64.4
AagrBONN_evm.TU.Sc2ySwM_368.419 Anthoceros agrestis HOM05D002373 ORTHO05D005805 7.0e-40 168.7 449 30.7
Mapoly0084s0004 Marchantia polymorpha HOM05D002373 ORTHO05D005805 1.8e-35 154.1 433 29.3
MD11G1249600 Malus domestica HOM05D002373 ORTHO05D005805 2.3e-30 137.1 294 37.4
Pp3c13_12110 Physcomitrium patens HOM05D002373 ORTHO05D005805 8.1e-28 128.6 423 25.8
Rhsim04G0021600 Rhododendron simsii HOM05D002373 ORTHO05D005805 5.8e-26 122.5 63 85.7
Dinv20180 Davidia involucrata HOM05D002373 ORTHO05D005805 1.3e-25 121.3 63 84.1
GSVIVG01014319001 Vitis vinifera HOM05D002373 ORTHO05D005805 2.9e-25 120.2 63 84.1
SEGI_27326 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 9.2e-24 115.2 158 45.6
Aqoxy1G02769 Aquilegia oxysepala HOM05D002373 ORTHO05D005805 2.1e-20 104.0 63 74.6
SEGI_30818 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 2.8e-20 103.6 103 51.5
SEGI_17099 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 4.1e-16 89.7 258 29.1
SEGI_11294 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 5.1e-14 82.8 63 52.4
arahy.Tifrunner.gnm1.ann1.B0SKQG Arachis hypogaea HOM05D000980 ORTHO05D000649 6.2e-12 75.9 37 86.5
SEGI_01502 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 6.4e-09 65.9 43 62.8
Actinidia35247 Actinidia chinensis HOM05D002373 ORTHO05D005805 2.7e-07 60.5 69 44.9
SEGI_17365 Sequoiadendron giganteum HOM05D002373 ORTHO05D005805 3.5e-07 60.1 39 61.5
Os12g0178700 Oryza sativa ssp. japonica HOM05D005078 ORTHO05D007574 3.9e-06 56.6 76 40.8
HPP92_016129 Vanilla planifolia HOM05D005078 ORTHO05D007574 5.1e-06 56.2 95 35.8
COL.COLO4_20871 Corchorus olitorius HOM05D005078 ORTHO05D007574 6.6e-06 55.8 64 42.2


User provided reference genes

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