Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 1.6e-188 662.5 328 100.0
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 7.7e-146 520.8 330 79.1
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 1.5e-133 479.9 332 72.0
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 1.7e-116 423.3 325 65.2
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 8.9e-110 401.0 331 61.0
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 2.9e-108 396.0 327 61.8
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.2e-106 390.6 329 59.6
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 2.1e-106 389.8 332 60.2
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 5.1e-105 385.2 327 58.7
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 1.9e-104 383.3 330 60.9
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 3.3e-104 382.5 327 59.3
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 1.2e-103 380.6 330 60.3
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 1.2e-103 380.6 327 58.4
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 1.6e-103 380.2 327 59.6
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 2.1e-103 379.8 329 58.7
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.1e-103 379.8 327 60.6
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 2.8e-103 379.4 329 58.1
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.1e-102 375.9 329 57.1
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 3.1e-102 375.9 329 57.1
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 3.1e-102 375.9 331 58.6
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 6.8e-102 374.8 329 59.0
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 8.9e-102 374.4 339 56.0
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 8.9e-102 374.4 330 59.1
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.0e-101 373.2 329 57.8
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.6e-101 372.9 329 56.8
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 5.8e-101 371.7 329 56.8
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 7.6e-101 371.3 327 57.8
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.3e-100 370.5 329 56.5
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.7e-100 370.2 334 58.4
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 2.2e-100 369.8 328 56.7
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 6.4e-100 368.2 330 58.8
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 3.2e-99 365.9 325 57.8
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 5.4e-99 365.2 334 58.1
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 9.3e-99 364.4 329 56.8
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.1e-98 363.2 329 55.0
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 2.1e-98 363.2 330 57.0
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 2.7e-98 362.8 326 57.7
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 2.7e-98 362.8 327 57.2
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 4.6e-98 362.1 331 56.5
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 7.8e-98 361.3 328 56.4
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 2.3e-97 359.8 328 57.0
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 3.9e-97 359.0 329 55.3
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 5.1e-97 358.6 329 56.5
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 5.1e-97 358.6 331 57.1
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 8.7e-97 357.8 277 63.9
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 2.5e-96 356.3 302 57.6
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 9.6e-96 354.4 293 60.4
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 2.4e-94 349.7 329 54.4
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 3.1e-94 349.4 328 58.2
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 3.1e-94 349.4 325 56.6
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 9.0e-94 347.8 341 55.4
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 3.4e-93 345.9 335 56.1
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 7.6e-93 344.7 328 54.6
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 9.9e-93 344.4 326 57.7
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.3e-92 344.0 330 55.8
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.3e-92 344.0 327 53.5
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 3.8e-92 342.4 319 57.1
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 3.2e-91 339.3 327 53.2
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 5.4e-91 338.6 356 52.5
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 7.1e-91 338.2 310 58.1
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 4.6e-90 335.5 333 52.6
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 6.0e-90 335.1 331 54.7
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.3e-89 334.0 327 54.1
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 2.5e-88 329.7 331 53.5
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.3e-88 329.3 296 56.8
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 9.6e-88 327.8 331 55.6
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 2.1e-87 326.6 330 52.1
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 2.8e-87 326.2 327 50.8
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 3.6e-87 325.9 332 51.2
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 6.2e-87 325.1 327 50.8
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 1.1e-86 324.3 331 53.2
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 1.1e-86 324.3 310 56.5
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.8e-86 323.6 331 51.7
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 6.9e-86 321.6 306 55.9
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 2.0e-85 320.1 338 51.2
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.7e-84 317.0 320 50.6
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 2.2e-84 316.6 332 50.0
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 4.9e-84 315.5 345 50.4
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 6.4e-84 315.1 341 51.9
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.1e-83 314.3 317 50.5
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 1.1e-83 314.3 296 56.8
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 1.9e-83 313.5 329 50.2
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.6e-82 310.5 298 54.7
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 1.3e-81 307.4 235 61.7
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.1e-80 304.3 215 67.0
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 1.9e-80 303.5 298 55.7
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.4e-78 297.4 294 54.8
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 2.4e-78 296.6 299 51.5
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.0e-78 295.8 328 49.4
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 2.0e-77 293.5 289 55.0
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 3.4e-77 292.7 359 48.7
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.4e-77 292.7 350 48.6
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 7.6e-77 291.6 325 50.2
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 1.1e-75 287.7 347 45.8
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 3.2e-75 286.2 337 47.5
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 4.6e-74 282.3 251 59.8
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 6.3e-71 271.9 317 47.9
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 2.4e-70 270.0 344 46.2
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 2.6e-69 266.5 344 45.3
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 4.5e-69 265.8 344 45.1
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 1.1e-67 261.2 353 43.1
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 7.2e-67 258.5 329 45.9
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 9.3e-67 258.1 261 52.9
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 1.0e-65 254.6 301 47.5
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 5.1e-65 252.3 275 48.4
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.9e-64 250.4 229 55.5
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.9e-64 250.4 229 55.5
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 5.7e-64 248.8 265 48.3
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.8e-63 245.7 217 54.8
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 5.9e-61 238.8 174 65.5
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 5.9e-61 238.8 290 42.8
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 7.7e-61 238.4 277 48.7
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 1.7e-60 237.3 357 41.7
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.4e-59 234.2 226 55.3
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 7.4e-56 221.9 243 44.9
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.8e-55 219.2 292 43.5
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 6.3e-55 218.8 329 41.0
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 2.4e-54 216.9 208 53.8
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.1e-51 208.0 331 40.8
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.9e-51 207.2 247 46.6
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 2.2e-47 193.7 213 49.8
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 1.8e-46 190.7 268 42.5
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 1.8e-46 190.7 179 53.6
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 1.0e-44 184.9 122 63.9
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 8.5e-44 181.8 247 42.9
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 1.5e-43 181.0 148 58.1
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.2e-40 171.4 161 55.3
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 2.6e-40 170.2 251 40.2
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 4.4e-40 169.5 166 53.0
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 9.7e-40 168.3 274 38.7
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 6.3e-39 165.6 143 53.1
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 3.6e-34 149.8 158 53.8
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 5.2e-33 146.0 278 31.7
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 2.2e-31 140.6 148 49.3
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 9.1e-30 135.2 163 43.6
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.2e-26 124.8 154 45.5
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.6e-26 124.4 223 37.7
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.0e-25 121.7 71 78.9
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 3.1e-22 110.2 162 40.7
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 3.3e-19 100.1 184 35.9
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 1.4e-17 94.7 174 29.3
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.1e-14 85.1 58 70.7
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 1.9e-11 74.3 49 63.3
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 6.8e-09 65.9 69 49.3
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 1.9e-06 57.8 31 80.6


User provided reference genes

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