Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 3.2e-164 581.6 285 100.0
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 1.5e-124 449.9 280 77.9
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 5.9e-118 427.9 283 75.6
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 3.1e-90 335.9 279 62.7
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 2.1e-86 323.2 299 57.2
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 7.8e-86 321.2 292 58.9
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 7.3e-84 314.7 296 56.1
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 3.1e-82 309.3 286 58.7
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 1.2e-81 307.4 282 56.0
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 1.2e-81 307.4 295 58.0
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 1.5e-81 307.0 300 57.3
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 2.6e-81 306.2 291 56.7
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 3.4e-81 305.8 293 56.0
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 3.4e-81 305.8 289 56.4
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 5.8e-81 305.1 288 55.6
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 5.8e-81 305.1 301 57.1
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 1.3e-80 303.9 289 55.0
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 2.2e-80 303.1 297 53.9
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 2.9e-80 302.8 289 56.1
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 2.9e-80 302.8 289 55.7
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 3.8e-80 302.4 290 57.2
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 8.4e-80 301.2 282 54.6
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 1.1e-79 300.8 284 56.0
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 1.4e-79 300.4 282 54.6
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 1.4e-79 300.4 296 57.1
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 1.9e-79 300.1 281 55.2
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 2.4e-79 299.7 293 56.3
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 4.2e-79 298.9 282 55.0
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 1.2e-78 297.4 295 54.2
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 2.7e-78 296.2 294 55.1
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 3.5e-78 295.8 283 55.8
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 4.6e-78 295.4 289 55.0
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 4.6e-78 295.4 285 54.7
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 6.0e-78 295.0 316 53.5
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 1.0e-77 294.3 297 55.2
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 1.0e-77 294.3 297 54.2
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 1.3e-77 293.9 294 53.7
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 1.7e-77 293.5 282 54.3
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 3.9e-77 292.4 293 53.9
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 3.9e-77 292.4 282 54.6
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 5.1e-77 292.0 292 54.5
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 6.6e-77 291.6 295 53.2
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 1.5e-76 290.4 290 53.4
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.3e-76 289.3 292 53.1
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 7.3e-76 288.1 296 53.4
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.2e-75 287.3 295 55.3
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 1.2e-75 287.3 283 54.4
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 1.2e-75 287.3 295 52.5
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 1.6e-75 287.0 296 52.4
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 1.6e-75 287.0 302 53.6
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 1.6e-75 287.0 281 52.7
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 1.6e-75 287.0 295 52.5
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 2.1e-75 286.6 284 54.2
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 3.6e-75 285.8 299 53.5
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 6.2e-75 285.0 285 52.6
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 6.2e-75 285.0 294 53.1
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 8.1e-75 284.6 296 54.1
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 1.1e-74 284.3 298 52.3
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 1.4e-74 283.9 283 53.7
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 1.8e-74 283.5 302 51.0
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 1.8e-74 283.5 290 54.5
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 3.1e-74 282.7 296 51.7
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 4.0e-74 282.3 293 54.3
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 2.0e-73 280.0 285 53.7
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 3.4e-73 279.3 297 50.8
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 5.8e-73 278.5 283 53.0
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 9.9e-73 277.7 287 52.6
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 1.3e-72 277.3 294 52.7
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.3e-72 277.3 308 52.6
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 6.4e-72 275.0 287 51.2
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 1.1e-71 274.2 291 51.9
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 2.7e-70 269.6 295 52.2
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 7.8e-70 268.1 217 62.2
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 1.1e-68 264.2 273 54.6
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 1.5e-68 263.8 318 49.4
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 4.3e-68 262.3 295 50.5
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 4.3e-68 262.3 275 52.7
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 5.6e-68 261.9 264 53.0
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 7.3e-68 261.5 292 49.7
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 9.6e-68 261.2 292 50.3
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 1.1e-66 257.7 283 51.6
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 2.0e-65 253.4 273 50.9
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 4.5e-65 252.3 276 52.2
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 5.8e-65 251.9 287 49.5
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 5.6e-60 235.3 335 43.3
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 9.6e-60 234.6 232 55.6
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 1.3e-56 224.2 302 45.0
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 2.5e-55 219.9 280 44.6
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 1.3e-53 214.2 289 43.9
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.3e-53 214.2 175 60.0
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.3e-52 209.1 289 40.8
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 9.6e-52 208.0 247 46.6
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 1.3e-51 207.6 290 44.8
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 2.1e-51 206.8 173 59.5
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 1.8e-50 203.8 161 64.0
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 5.3e-50 202.2 297 42.8
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 4.2e-47 192.6 277 39.7
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 5.5e-47 192.2 280 39.3
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.1e-45 185.7 160 56.2
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.3e-44 183.0 118 72.0
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.3e-44 183.0 118 72.0
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 2.2e-43 180.3 274 41.6
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 5.9e-41 172.2 288 36.1
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 1.0e-40 171.4 277 41.5
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 2.2e-40 170.2 151 58.3
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 8.5e-40 168.3 287 36.9
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 1.4e-39 167.5 271 41.0
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 7.9e-38 161.8 275 38.5
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 3.9e-37 159.5 103 71.8
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 5.1e-37 159.1 102 74.5
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.1e-36 157.9 110 66.4
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 1.5e-36 157.5 302 37.4
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 8.2e-35 151.8 284 37.0
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.1e-34 151.4 291 38.8
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.4e-34 151.0 285 35.1
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 3.1e-34 149.8 95 73.7
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 9.1e-34 148.3 286 35.0
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 9.1e-34 148.3 309 36.2
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 5.9e-33 145.6 286 35.7
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 5.5e-31 139.0 190 45.3
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 4.4e-28 129.4 219 41.1
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 2.2e-27 127.1 173 45.1
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.8e-26 124.0 102 59.8
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.9e-25 119.0 206 35.9
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 1.2e-22 111.3 140 42.9
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 6.7e-21 105.5 161 40.4
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 5.7e-20 102.4 122 51.6
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 6.3e-19 99.0 143 39.9
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.4e-18 97.8 144 41.0
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 3.2e-15 86.7 50 76.0
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.6e-14 84.3 54 75.9
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 2.1e-14 84.0 196 32.7
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 5.7e-12 75.9 50 68.0
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.4e-10 71.2 119 37.0
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 8.0e-06 55.5 71 43.7


User provided reference genes

Program Settings