Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 1.0e-172 610.1 338 100.0
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.0e-92 344.4 331 62.5
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 1.7e-84 317.0 327 62.1
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 2.3e-52 210.3 341 47.2
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.1e-51 208.0 349 43.3
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 5.0e-39 166.0 328 40.9
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 3.0e-36 156.8 331 44.1
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 1.1e-35 154.8 331 43.8
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.5e-35 154.5 325 41.5
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 4.8e-34 149.4 338 43.2
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 1.4e-33 147.9 326 41.4
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 2.4e-33 147.1 333 36.9
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 5.3e-33 146.0 326 39.3
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.6e-32 144.4 334 38.6
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.6e-32 143.7 349 43.8
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 3.5e-32 143.3 322 43.8
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.5e-32 142.9 322 43.8
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.3e-31 141.4 337 44.8
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 2.9e-31 140.2 333 43.2
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 3.8e-31 139.8 327 44.3
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 6.5e-31 139.0 323 42.4
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 6.5e-31 139.0 323 42.4
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 6.5e-31 139.0 340 42.1
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 8.5e-31 138.7 334 41.0
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 1.5e-30 137.9 328 42.4
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 2.5e-30 137.1 330 40.6
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.2e-30 136.7 326 41.4
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 3.2e-30 136.7 326 41.4
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 4.2e-30 136.3 310 37.7
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 5.5e-30 136.0 332 42.5
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 9.4e-30 135.2 326 42.0
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 9.4e-30 135.2 320 38.8
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 1.0e-28 131.7 342 38.6
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 2.3e-28 130.6 320 41.9
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.3e-28 130.6 282 40.4
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 2.3e-28 130.6 323 41.8
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 6.7e-28 129.0 314 40.1
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 8.8e-28 128.6 335 39.7
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.0e-27 127.5 325 43.7
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 3.3e-27 126.7 322 39.4
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 4.4e-27 126.3 325 42.2
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 5.7e-27 125.9 320 39.7
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 7.5e-27 125.6 331 36.0
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 9.7e-27 125.2 319 37.6
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 2.2e-26 124.0 341 41.1
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 2.2e-26 124.0 325 41.2
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.2e-26 124.0 271 39.9
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 8.2e-26 122.1 340 41.5
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 8.2e-26 122.1 329 41.0
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 1.4e-25 121.3 320 40.9
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 2.4e-25 120.6 344 43.0
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 2.4e-25 120.6 340 37.4
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 2.4e-25 120.6 328 40.9
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.1e-25 120.2 316 40.5
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.1e-25 120.2 317 40.1
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 4.1e-25 119.8 331 33.8
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 9.1e-25 118.6 346 40.5
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.2e-24 118.2 324 41.0
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 1.6e-24 117.9 331 41.4
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.7e-24 117.1 317 41.0
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 4.5e-24 116.3 307 41.4
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 4.5e-24 116.3 331 38.4
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 1.0e-23 115.2 324 41.4
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 1.0e-23 115.2 324 41.4
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.3e-23 114.8 356 32.9
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 1.3e-23 114.8 349 38.1
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.7e-23 114.4 316 39.2
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 5.0e-23 112.8 334 36.8
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 6.5e-23 112.5 347 32.0
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 8.5e-23 112.1 330 40.6
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.1e-22 111.7 368 30.7
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 1.5e-22 111.3 317 39.1
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 2.5e-22 110.5 319 38.9
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 3.2e-22 110.2 334 41.3
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 4.2e-22 109.8 323 39.0
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.2e-21 108.2 318 39.9
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 1.2e-21 108.2 336 36.6
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 8.0e-21 105.5 343 37.6
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 8.0e-21 105.5 316 36.1
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.0e-20 105.1 262 42.4
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 1.0e-20 105.1 351 34.5
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 1.8e-20 104.4 318 35.2
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 1.8e-20 104.4 330 38.5
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.8e-20 104.4 330 38.5
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 6.8e-20 102.4 338 36.4
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 8.8e-20 102.1 339 39.8
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 8.8e-20 102.1 345 34.2
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 1.5e-19 101.3 343 31.2
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 2.6e-19 100.5 311 36.3
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.6e-19 100.5 339 39.5
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 3.4e-19 100.1 357 38.9
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 4.4e-19 99.8 315 43.2
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 9.8e-19 98.6 207 39.6
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.3e-18 98.2 338 39.1
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 1.7e-18 97.8 357 38.9
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 4.8e-18 96.3 305 34.4
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 2.4e-17 94.0 238 37.8
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 4.1e-17 93.2 336 34.2
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 9.1e-17 92.0 323 34.4
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 1.2e-16 91.7 332 35.8
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 1.6e-16 91.3 337 36.8
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.6e-16 91.3 338 37.0
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.6e-16 91.3 338 37.0
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.6e-16 91.3 338 37.0
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 2.7e-16 90.5 337 31.8
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 3.5e-16 90.1 342 36.5
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 3.5e-16 90.1 335 30.7
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 5.9e-16 89.4 349 33.0
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 5.9e-16 89.4 245 44.1
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.0e-15 88.6 328 30.5
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 1.7e-15 87.8 336 31.8
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 2.3e-15 87.4 333 35.7
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 3.8e-15 86.7 346 32.9
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 3.8e-15 86.7 315 33.0
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 6.5e-15 85.9 330 30.6
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 1.1e-14 85.1 327 33.6
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 1.9e-14 84.3 354 33.1
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 4.7e-13 79.7 321 37.4
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.4e-12 78.2 342 30.1
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 3.0e-12 77.0 344 33.7
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 6.8e-12 75.9 323 32.2
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 8.9e-12 75.5 344 33.4
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 8.9e-12 75.5 118 50.0
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.2e-11 75.1 239 36.4
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 1.2e-11 75.1 326 34.4
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 1.5e-11 74.7 316 30.1
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 2.0e-11 74.3 319 34.2
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 3.4e-11 73.6 313 35.1
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 3.4e-11 73.6 323 29.7
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 5.7e-11 72.8 348 33.3
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 5.7e-11 72.8 324 33.6
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 7.5e-11 72.4 322 33.2
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 7.5e-11 72.4 322 33.9
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 7.5e-11 72.4 322 33.2
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 9.8e-11 72.0 360 32.8
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 1.7e-10 71.2 318 33.3
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.7e-10 71.2 347 34.3
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 3.7e-10 70.1 347 31.7
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 8.3e-10 68.9 347 33.7
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 1.4e-09 68.2 354 32.8
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 7.0e-09 65.9 306 36.6
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 7.0e-09 65.9 340 31.8
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 1.5e-06 58.2 330 31.5
Nitab4.5_0002879g0080 Nicotiana tabacum HOM05D001488 ORTHO05D001456 5.6e-06 56.2 232 26.3


User provided reference genes

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