Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 5.7e-135 484.2 234 100.0
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 4.3e-122 441.4 226 92.9
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 5.6e-122 441.0 224 92.9
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 3.7e-118 428.3 226 90.7
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 2.7e-116 422.2 228 85.5
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 2.3e-115 419.1 221 87.3
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 3.0e-115 418.7 223 86.5
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 3.9e-115 418.3 229 85.2
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 5.0e-115 417.9 222 86.9
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 5.0e-115 417.9 222 86.9
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 1.1e-114 416.8 223 85.7
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 1.5e-114 416.4 221 86.9
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 2.5e-114 415.6 221 86.9
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 3.3e-114 415.2 221 86.9
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 2.1e-113 412.5 221 85.5
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 2.8e-113 412.1 222 85.6
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 3.6e-113 411.8 226 83.2
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 6.2e-113 411.0 230 82.6
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 8.0e-113 410.6 223 83.9
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 1.4e-112 409.8 222 85.1
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 1.4e-112 409.8 221 86.4
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 1.4e-112 409.8 226 85.0
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.4e-112 409.8 223 84.3
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 1.4e-112 409.8 222 84.2
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 3.1e-112 408.7 226 83.6
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 3.1e-112 408.7 222 84.2
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 5.2e-112 407.9 222 84.7
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 5.2e-112 407.9 223 84.3
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 5.2e-112 407.9 224 83.5
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 6.8e-112 407.5 223 83.4
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 6.8e-112 407.5 222 84.2
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 8.9e-112 407.1 222 85.6
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.2e-111 406.8 223 83.9
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 1.5e-111 406.4 221 85.5
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 1.5e-111 406.4 221 84.6
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.5e-111 406.4 222 83.3
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.5e-111 406.4 235 81.3
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 3.4e-111 405.2 226 83.6
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 4.4e-111 404.8 222 85.6
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 5.8e-111 404.4 222 82.9
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 5.8e-111 404.4 217 86.6
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 5.8e-111 404.4 223 83.9
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 7.5e-111 404.1 226 82.3
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 9.8e-111 403.7 221 84.2
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 1.3e-110 403.3 227 81.9
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 2.9e-110 402.1 221 83.3
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 3.7e-110 401.7 223 83.0
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 4.9e-110 401.4 223 83.4
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 6.4e-110 401.0 221 83.3
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 6.4e-110 401.0 226 82.7
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 8.3e-110 400.6 226 81.4
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.1e-109 400.2 226 81.9
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.1e-109 400.2 222 82.9
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 1.1e-109 400.2 223 83.0
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.4e-109 399.8 223 81.6
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.9e-109 399.4 222 82.0
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 1.9e-109 399.4 221 81.9
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 1.9e-109 399.4 223 83.9
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 1.9e-109 399.4 222 83.3
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.9e-109 399.4 222 82.0
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 3.2e-109 398.7 228 81.6
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 5.4e-109 397.9 221 83.3
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 5.4e-109 397.9 226 81.9
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 7.0e-109 397.5 242 78.5
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 7.0e-109 397.5 223 81.6
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 9.2e-109 397.1 219 84.0
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 9.2e-109 397.1 220 83.6
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.2e-108 396.7 223 82.5
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 1.2e-108 396.7 226 82.7
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.0e-108 396.0 220 83.6
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 2.7e-108 395.6 222 81.1
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 3.5e-108 395.2 225 80.9
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 6.0e-108 394.4 221 84.2
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 6.0e-108 394.4 225 81.8
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 6.0e-108 394.4 225 80.4
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 7.8e-108 394.0 221 82.4
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.0e-107 393.7 221 81.9
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 1.0e-107 393.7 223 81.6
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 1.0e-107 393.7 225 81.3
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 1.7e-107 392.9 222 82.9
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 1.7e-107 392.9 223 80.7
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 1.7e-107 392.9 248 75.8
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.3e-107 392.5 218 83.5
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 3.0e-107 392.1 222 82.9
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 3.0e-107 392.1 220 84.1
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 3.9e-107 391.7 221 83.7
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 5.0e-107 391.3 220 82.3
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.0e-107 391.3 221 81.4
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 6.6e-107 391.0 220 83.6
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 6.6e-107 391.0 220 83.6
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 6.6e-107 391.0 220 83.6
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 6.6e-107 391.0 223 81.2
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 6.6e-107 391.0 219 82.2
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 8.6e-107 390.6 220 83.6
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 1.1e-106 390.2 220 83.6
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 2.5e-106 389.0 221 83.3
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 2.5e-106 389.0 220 83.2
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 3.3e-106 388.7 215 83.3
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 7.3e-106 387.5 221 82.8
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 2.8e-105 385.6 220 81.4
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 2.8e-105 385.6 220 82.7
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 2.8e-105 385.6 223 78.9
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 4.7e-105 384.8 220 83.2
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 4.7e-105 384.8 222 81.1
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 6.2e-105 384.4 220 79.5
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 1.8e-104 382.9 220 82.7
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 1.8e-104 382.9 220 82.7
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 2.3e-104 382.5 212 83.5
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.3e-104 382.5 221 78.7
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 5.2e-104 381.3 221 82.4
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 5.2e-104 381.3 218 80.3
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.2e-103 380.2 212 83.0
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 2.0e-103 379.4 222 79.7
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.3e-102 376.7 276 67.0
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 4.1e-101 371.7 218 78.9
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 3.5e-100 368.6 223 78.5
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.2e-97 360.1 221 72.4
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 4.7e-97 358.2 208 82.7
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.2e-95 353.6 228 74.6
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 4.6e-92 341.7 219 71.7
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 1.2e-89 333.6 219 68.9
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 2.8e-89 332.4 213 69.5
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 2.4e-85 319.3 223 65.5
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 4.0e-80 302.0 161 89.4
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 3.4e-79 298.9 164 89.0
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.5e-74 283.5 159 81.1
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 9.6e-74 280.8 152 83.6
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 2.8e-73 279.3 169 74.0
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 1.9e-69 266.5 215 58.6
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 1.1e-66 257.3 133 91.7
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 2.0e-63 246.5 130 83.8
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 7.6e-63 244.6 158 72.8
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 5.1e-59 231.9 214 51.9
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 4.8e-57 225.3 209 53.1
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 9.0e-56 221.1 150 75.3
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 1.9e-53 213.4 209 47.8
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 6.1e-52 208.4 111 87.4
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.7e-49 199.1 114 76.3
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 4.1e-48 195.7 114 76.3
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 7.9e-44 181.4 130 60.8
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 1.1e-37 161.0 103 83.5
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 9.4e-37 157.9 87 77.0
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 4.7e-36 155.6 102 74.5
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.4e-35 154.1 216 38.4
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 7.2e-29 131.7 133 50.4
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 7.2e-29 131.7 75 84.0
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.7e-27 125.2 65 84.6
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.3e-26 122.9 78 75.6
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 4.4e-26 122.5 60 90.0
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 9.7e-26 121.3 108 55.6
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 3.5e-23 112.8 54 92.6
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 9.4e-21 104.8 61 83.6
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.3e-19 100.1 58 81.0
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 5.2e-19 99.0 61 80.3
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.2e-18 97.8 57 68.4
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.4e-18 96.3 64 71.9
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 9.8e-18 94.7 64 75.0
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.9e-15 85.5 128 44.5
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 5.9e-15 85.5 54 77.8
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 5.0e-14 82.4 100 46.0
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 4.7e-12 75.9 51 70.6
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 1.7e-09 67.4 39 74.4
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.6e-07 60.8 35 82.9
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 5.9e-07 58.9 43 69.8


User provided reference genes

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