Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 3.1e-243 844.7 431 100.0
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 2.3e-137 493.0 421 65.1
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 9.9e-109 397.9 439 56.7
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 3.4e-40 170.2 516 32.6
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 7.0e-38 162.5 468 34.8
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.1e-35 155.2 462 32.9
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 2.3e-28 131.0 520 30.2
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 2.8e-26 124.0 533 25.3
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 1.1e-25 122.1 559 27.0
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 4.0e-25 120.2 239 38.9
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 3.4e-24 117.1 537 27.9
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 4.4e-24 116.7 467 29.1
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 7.5e-24 115.9 199 41.7
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 9.8e-24 115.5 532 27.3
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 1.9e-22 111.3 293 36.5
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 7.1e-22 109.4 413 27.6
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 2.7e-21 107.5 197 38.6
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 3.5e-21 107.1 501 27.7
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 1.3e-20 105.1 565 25.8
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 1.7e-20 104.8 228 36.0
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 1.7e-20 104.8 212 38.7
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 6.6e-20 102.8 215 37.7
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 1.1e-19 102.1 431 27.6
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 1.1e-19 102.1 256 33.2
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 1.5e-19 101.7 427 28.3
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.9e-19 101.3 257 33.1
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.9e-19 101.3 257 32.7
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 2.5e-19 100.9 531 26.9
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 2.5e-19 100.9 316 32.6
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 3.3e-19 100.5 258 33.7
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 7.3e-19 99.4 504 26.8
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 1.2e-18 98.6 496 25.4
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 1.2e-18 98.6 319 29.8
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 1.6e-18 98.2 546 25.3
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.6e-18 98.2 246 33.3
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 1.6e-18 98.2 435 26.9
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 1.6e-18 98.2 194 39.2
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 2.1e-18 97.8 445 26.5
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 2.8e-18 97.4 341 32.6
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 2.8e-18 97.4 222 35.6
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 2.8e-18 97.4 215 34.9
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 2.8e-18 97.4 229 36.7
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 2.8e-18 97.4 224 31.7
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 3.6e-18 97.1 232 35.8
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 3.6e-18 97.1 331 30.2
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 4.7e-18 96.7 346 30.3
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 4.7e-18 96.7 348 30.2
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 6.2e-18 96.3 290 30.3
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 6.2e-18 96.3 311 30.2
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 6.2e-18 96.3 509 25.1
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 8.1e-18 95.9 568 25.5
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 8.1e-18 95.9 242 33.1
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 1.1e-17 95.5 390 26.4
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.1e-17 95.5 312 32.4
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 1.1e-17 95.5 194 36.6
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 1.4e-17 95.1 267 32.6
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 1.4e-17 95.1 510 25.7
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 1.4e-17 95.1 222 36.9
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 1.8e-17 94.7 442 29.0
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 1.8e-17 94.7 531 25.0
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.8e-17 94.7 531 25.0
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 1.8e-17 94.7 423 27.2
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 3.1e-17 94.0 290 30.0
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 3.1e-17 94.0 396 26.0
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 3.1e-17 94.0 299 31.4
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 3.1e-17 94.0 263 31.2
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 6.8e-17 92.8 292 30.5
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 6.8e-17 92.8 191 35.6
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 1.2e-16 92.0 235 34.5
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.5e-16 91.7 501 24.8
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 1.5e-16 91.7 232 33.6
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 1.5e-16 91.7 503 25.8
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 1.5e-16 91.7 193 34.7
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 2.0e-16 91.3 234 31.6
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 2.0e-16 91.3 468 27.4
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.0e-16 91.3 318 28.3
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 2.0e-16 91.3 246 32.1
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 2.0e-16 91.3 430 28.8
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 2.6e-16 90.9 216 34.3
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 2.6e-16 90.9 283 30.0
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 2.6e-16 90.9 215 31.6
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 2.6e-16 90.9 257 30.7
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.4e-16 90.5 306 28.1
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 3.4e-16 90.5 356 27.8
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 4.4e-16 90.1 453 24.5
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 4.4e-16 90.1 436 27.3
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 5.8e-16 89.7 380 27.6
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 7.6e-16 89.4 349 29.5
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 9.9e-16 89.0 550 25.1
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 9.9e-16 89.0 501 23.6
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 9.9e-16 89.0 546 24.2
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 9.9e-16 89.0 249 31.7
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 9.9e-16 89.0 523 25.0
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 1.3e-15 88.6 229 31.9
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 1.3e-15 88.6 246 34.6
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 1.7e-15 88.2 229 33.6
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 2.2e-15 87.8 420 26.7
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 2.2e-15 87.8 289 29.4
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 3.7e-15 87.0 505 24.8
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 4.9e-15 86.7 226 33.2
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 4.9e-15 86.7 232 33.2
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 4.9e-15 86.7 384 28.6
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 4.9e-15 86.7 541 24.4
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 6.4e-15 86.3 433 27.0
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 1.1e-14 85.5 288 29.2
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.1e-14 85.5 537 25.0
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 1.4e-14 85.1 494 26.5
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.4e-14 85.1 543 24.5
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 1.9e-14 84.7 247 31.6
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 1.9e-14 84.7 231 29.9
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 2.4e-14 84.3 229 33.6
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 4.1e-14 83.6 224 31.2
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 5.4e-14 83.2 434 26.0
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 7.1e-14 82.8 272 29.8
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 7.1e-14 82.8 190 37.9
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 7.1e-14 82.8 230 33.0
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 9.2e-14 82.4 277 30.3
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 9.2e-14 82.4 191 34.0
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 9.2e-14 82.4 337 29.4
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 9.2e-14 82.4 347 27.4
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 9.2e-14 82.4 230 33.5
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 9.2e-14 82.4 251 29.9
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 1.2e-13 82.0 243 30.0
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 1.2e-13 82.0 294 28.2
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 1.2e-13 82.0 229 33.6
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 1.2e-13 82.0 227 32.6
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 1.2e-13 82.0 297 31.3
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 2.1e-13 81.3 243 30.0
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 2.1e-13 81.3 248 31.5
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 2.1e-13 81.3 216 34.7
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 2.1e-13 81.3 373 27.1
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 2.1e-13 81.3 215 32.1
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 2.1e-13 81.3 512 26.6
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 2.7e-13 80.9 230 32.2
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 3.5e-13 80.5 232 33.2
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 3.5e-13 80.5 475 27.2
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 4.6e-13 80.1 412 26.0
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 4.6e-13 80.1 281 29.9
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 4.6e-13 80.1 495 25.9
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 4.6e-13 80.1 303 27.4
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 4.6e-13 80.1 216 34.3
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 4.6e-13 80.1 551 26.3
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 6.0e-13 79.7 252 30.6
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 7.8e-13 79.3 435 25.7
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 1.7e-12 78.2 409 25.9
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 3.0e-12 77.4 226 32.7
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 3.0e-12 77.4 227 31.3
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 3.9e-12 77.0 214 36.4
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 3.9e-12 77.0 569 25.5
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 6.6e-12 76.3 416 28.1
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 1.1e-11 75.5 405 26.2
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.1e-11 75.5 638 23.8
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 1.5e-11 75.1 222 33.8
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 2.5e-11 74.3 227 30.4
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 4.3e-11 73.6 209 29.7
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 5.6e-11 73.2 570 24.4
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 5.6e-11 73.2 218 31.7
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 7.3e-11 72.8 547 24.3
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 9.6e-11 72.4 214 30.4
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 1.2e-10 72.0 230 30.9
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 1.6e-10 71.6 297 27.3
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 1.6e-10 71.6 405 27.4
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 1.6e-10 71.6 494 24.7
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 2.1e-10 71.2 488 25.6
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 1.1e-09 68.9 501 25.3
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 3.1e-09 67.4 412 25.7
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 4.0e-09 67.0 230 30.9
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 5.2e-09 66.6 99 41.4
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 2.0e-08 64.7 402 26.1
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 2.0e-08 64.7 215 28.4
Actinidia19914 Actinidia chinensis HOM05D000020 ORTHO05D000156 5.8e-08 63.2 70 42.9
SGA_v2.0_scaffold36G14460 Striga asiatica HOM05D003672 ORTHO05D004121 9.9e-08 62.4 371 25.3
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 1.3e-07 62.0 416 26.4
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 1.7e-07 61.6 150 30.0
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 8.4e-07 59.3 309 24.3
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 1.9e-06 58.2 452 22.3
SMO367G0340 Selaginella moellendorffii HOM05D018912 ORTHO05D004121 7.1e-06 56.2 197 29.9
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 9.3e-06 55.8 346 23.4
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 9.3e-06 55.8 192 27.1


User provided reference genes

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