Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0362861 Helianthus annuus HOM05D002318 ORTHO05D004713 2.7e-28 127.9 60 100.0
HanXRQChr08g0211511 Helianthus annuus HOM05D002318 ORTHO05D004713 6.8e-16 86.7 53 75.5
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 8.9e-16 86.3 49 81.6
Lj3A1032T69 Lonicera japonica HOM05D002318 ORTHO05D004713 1.7e-14 82.0 54 70.4
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 2.9e-14 81.3 55 67.3
Potri.008G093100 Populus trichocarpa HOM05D002318 ORTHO05D004713 4.9e-14 80.5 55 69.1
vmacro01329 Vaccinium macrocarpon HOM05D002318 ORTHO05D004713 4.9e-14 80.5 58 65.5
Psat7g154320 Pisum sativum HOM05D002318 ORTHO05D004713 6.4e-14 80.1 58 60.3
ECA233G0414 Erigeron canadensis HOM05D002318 ORTHO05D004713 1.1e-13 79.3 53 69.8
MD16G1064800 Malus domestica HOM05D002318 ORTHO05D004713 1.1e-13 79.3 54 70.4
Rhsim10G0189100 Rhododendron simsii HOM05D002318 ORTHO05D004713 1.1e-13 79.3 55 67.3
Ciclev10033452m.g Citrus clementina HOM05D002318 ORTHO05D004713 1.9e-13 78.6 54 68.5
Lsat_1_v5_gn_3_56320 Lactuca sativa HOM05D002318 ORTHO05D004713 1.9e-13 78.6 51 74.5
Sabra08G0069900 Salix brachista HOM05D002318 ORTHO05D004713 1.9e-13 78.6 54 70.4
Cpa.g.sc1.88 Carica papaya HOM05D002318 ORTHO05D004713 2.4e-13 78.2 54 68.5
AUR62007956 Chenopodium quinoa HOM05D002318 ORTHO05D004713 2.4e-13 78.2 52 67.3
Nitab4.5_0002806g0070 Nicotiana tabacum HOM05D002318 ORTHO05D004713 2.4e-13 78.2 54 64.8
Glyma.01G055300 Glycine max HOM05D002318 ORTHO05D004713 3.2e-13 77.8 53 67.9
Glyma.02G113700 Glycine max HOM05D002318 ORTHO05D004713 3.2e-13 77.8 53 67.9
Rhsim12G0076600 Rhododendron simsii HOM05D002318 ORTHO05D004713 3.2e-13 77.8 55 65.5
Dinv34115 Davidia involucrata HOM05D002318 ORTHO05D004713 4.1e-13 77.4 54 68.5
Lj2g0006739 Lotus japonicus HOM05D002318 ORTHO05D004713 4.1e-13 77.4 55 67.3
TAR374G1646 Trochodendron aralioides HOM05D002318 ORTHO05D004713 4.1e-13 77.4 55 63.6
CSS0006939 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D004713 5.4e-13 77.0 54 68.5
CANSAT64G1373 Cannabis sativa HOM05D002318 ORTHO05D004713 5.4e-13 77.0 54 66.7
MD13G1066000 Malus domestica HOM05D002318 ORTHO05D004713 5.4e-13 77.0 54 66.7
Medtr4g082640 Medicago truncatula HOM05D002318 ORTHO05D004713 5.4e-13 77.0 52 63.5
Prupe.1G282100 Prunus persica HOM05D002318 ORTHO05D004713 5.4e-13 77.0 54 66.7
MSTRG.7765 Avicennia marina HOM05D002318 ORTHO05D004713 7.1e-13 76.6 54 64.8
Oeu023724.3 Olea europaea HOM05D002318 ORTHO05D004713 7.1e-13 76.6 53 67.9
arahy.Tifrunner.gnm1.ann1.KSM55U Arachis hypogaea HOM05D002318 ORTHO05D004713 9.2e-13 76.3 55 65.5
arahy.Tifrunner.gnm1.ann1.MP45AK Arachis hypogaea HOM05D002318 ORTHO05D004713 9.2e-13 76.3 55 65.5
arahy.Tifrunner.gnm1.ann1.R2RWAX Arachis hypogaea HOM05D002318 ORTHO05D004713 9.2e-13 76.3 54 66.7
arahy.Tifrunner.gnm1.ann1.XTY9PQ Arachis hypogaea HOM05D002318 ORTHO05D004713 9.2e-13 76.3 54 66.7
AUR62003137 Chenopodium quinoa HOM05D002318 ORTHO05D004713 9.2e-13 76.3 51 66.7
Migut.L01222 Erythranthe guttata HOM05D002318 ORTHO05D004713 9.2e-13 76.3 54 63.0
CSS0040724 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D004713 1.2e-12 75.9 54 66.7
Migut.E00062 Erythranthe guttata HOM05D002318 ORTHO05D004713 1.2e-12 75.9 54 63.0
Lalb_Chr17g0340991 Lupinus albus HOM05D002318 ORTHO05D004713 1.2e-12 75.9 55 67.3
Atru.chr11.1689 Acer truncatum HOM05D002318 ORTHO05D004713 1.6e-12 75.5 54 63.0
Actinidia12317 Actinidia chinensis HOM05D002318 ORTHO05D004713 1.6e-12 75.5 54 64.8
Nitab4.5_0000334g0250 Nicotiana tabacum HOM05D002318 ORTHO05D004713 1.6e-12 75.5 47 70.2
Peaxi162Scf00314g00033 Petunia axillaris HOM05D002318 ORTHO05D004713 1.6e-12 75.5 47 70.2
Solyc05g012610.3 Solanum lycopersicum HOM05D002318 ORTHO05D004713 1.6e-12 75.5 47 70.2
Sopen05g007440 Solanum pennellii HOM05D002318 ORTHO05D004713 1.6e-12 75.5 47 70.2
Aqoxy3G03554 Aquilegia oxysepala HOM05D002318 ORTHO05D004713 2.1e-12 75.1 54 66.7
EL10Ac6g14956 Beta vulgaris HOM05D002318 ORTHO05D004713 2.1e-12 75.1 47 68.1
Cc11_g12370 Coffea canephora HOM05D002318 ORTHO05D004713 2.1e-12 75.1 54 64.8
Oeu050176.1 Olea europaea HOM05D002318 ORTHO05D004713 2.1e-12 75.1 51 70.6
Potri.010G161500 Populus trichocarpa HOM05D002318 ORTHO05D004713 2.1e-12 75.1 54 64.8
ClCG09G020740 Citrullus lanatus HOM05D002318 ORTHO05D004713 2.7e-12 74.7 54 63.0
MELO3C002919.2 Cucumis melo HOM05D002318 ORTHO05D004713 2.7e-12 74.7 54 63.0
CsaV3_5G025630 Cucumis sativus L. HOM05D002318 ORTHO05D004713 2.7e-12 74.7 54 63.0
Hma1.2p1_0357F.1_g134430 Hydrangea macrophylla HOM05D002318 ORTHO05D004713 2.7e-12 74.7 51 70.6
Nitab4.5_0000014g0270 Nicotiana tabacum HOM05D002318 ORTHO05D004713 2.7e-12 74.7 55 61.8
Psat2g128200 Pisum sativum HOM05D002318 ORTHO05D004713 2.7e-12 74.7 55 61.8
MBI17_g34378_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D004713 3.5e-12 74.3 60 56.7
PGSC0003DMG401028328 Solanum tuberosum HOM05D002318 ORTHO05D004713 3.5e-12 74.3 47 68.1
TPR.G24428 Trifolium pratense HOM05D002318 ORTHO05D004713 3.5e-12 74.3 54 64.8
Actinidia31947 Actinidia chinensis HOM05D002318 ORTHO05D004713 4.6e-12 73.9 46 73.9
CAN.G1340.12 Capsicum annuum HOM05D002318 ORTHO05D004713 4.6e-12 73.9 47 68.1
HanXRQChr17g0545451 Helianthus annuus HOM05D002318 ORTHO05D004713 4.6e-12 73.9 55 63.6
Oeu021098.4 Olea europaea HOM05D002318 ORTHO05D004713 4.6e-12 73.9 51 68.6
PSO017G1201 Papaver somniferum HOM05D002318 ORTHO05D004713 4.6e-12 73.9 52 65.4
Phvul.002G069100 Phaseolus vulgaris HOM05D002318 ORTHO05D004713 4.6e-12 73.9 55 63.6
Thecc.02G336400 Theobroma cacao HOM05D002318 ORTHO05D004713 4.6e-12 73.9 61 59.0
TPR.G34090 Trifolium pratense HOM05D002318 ORTHO05D004713 4.6e-12 73.9 52 59.6
TWI75G1795 Tripterygium wilfordii HOM05D002318 ORTHO05D004713 4.6e-12 73.9 54 64.8
COL.COLO4_27932 Corchorus olitorius HOM05D002318 ORTHO05D004713 6.0e-12 73.6 61 59.0
PSO478G2077 Papaver somniferum HOM05D002318 ORTHO05D004713 6.0e-12 73.6 52 63.5
Sed0026215 Sechium edule HOM05D002318 ORTHO05D004713 6.0e-12 73.6 54 63.0
Hund05861 Selenicereus undatus HOM05D002318 ORTHO05D004713 6.0e-12 73.6 46 69.6
PGSC0003DMG400002818 Solanum tuberosum HOM05D002318 ORTHO05D004713 6.0e-12 73.6 51 66.7
Ah.02g126610 Amaranthus hybridus HOM05D002318 ORTHO05D004713 7.8e-12 73.2 46 67.4
BcaB05g24443 Brassica carinata HOM05D002318 ORTHO05D004713 7.8e-12 73.2 47 66.0
Haze_11933 Corylus avellana HOM05D002318 ORTHO05D004713 7.8e-12 73.2 62 59.7
Thhalv10018352m.g Eutrema salsugineum HOM05D002318 ORTHO05D004713 7.8e-12 73.2 51 68.6
Sp5g24400 Schrenkiella parvula HOM05D002318 ORTHO05D004713 7.8e-12 73.2 51 68.6
THA.LOC104822900 Tarenaya hassleriana HOM05D002318 ORTHO05D004713 7.8e-12 73.2 53 66.0
GSVIVG01012178001 Vitis vinifera HOM05D002318 ORTHO05D004713 7.8e-12 73.2 54 61.1
Duzib251G0769 Durio zibethinus HOM05D002318 ORTHO05D004713 1.0e-11 72.8 61 57.4
Lj6A782G109 Lonicera japonica HOM05D002318 ORTHO05D004713 1.0e-11 72.8 54 61.1
Sed0000373 Sechium edule HOM05D002318 ORTHO05D004713 1.0e-11 72.8 54 63.0
Sopen04g001510 Solanum pennellii HOM05D002318 ORTHO05D004713 1.0e-11 72.8 51 66.7
Aa31LG4G11530 Aethionema arabicum HOM05D002318 ORTHO05D004713 1.3e-11 72.4 51 68.6
ATR0111G025 Amborella trichopoda HOM05D002318 ORTHO05D004713 1.3e-11 72.4 54 61.1
CDE04G3596 Ceratophyllum demersum HOM05D002318 ORTHO05D004713 1.3e-11 72.4 54 63.0
DCAR_007181 Daucus carota HOM05D002318 ORTHO05D004713 1.3e-11 72.4 56 64.3
Gohir.D13G079800 Gossypium hirsutum HOM05D002318 ORTHO05D004713 1.3e-11 72.4 55 63.6
Gorai.013G091300 Gossypium raimondii HOM05D002318 ORTHO05D004713 1.3e-11 72.4 55 63.6
Hma1.2p1_0354F.1_g133630 Hydrangea macrophylla HOM05D002318 ORTHO05D004713 1.3e-11 72.4 54 59.3
Manes.05G107600 Manihot esculenta HOM05D002318 ORTHO05D004713 1.3e-11 72.4 54 63.0
Nn4g23328 Nelumbo nucifera HOM05D002318 ORTHO05D004713 1.3e-11 72.4 47 66.0
Solyc04g005490.3 Solanum lycopersicum HOM05D002318 ORTHO05D004713 1.3e-11 72.4 51 66.7
AL2G28450 Arabidopsis lyrata HOM05D002318 ORTHO05D004713 1.7e-11 72.0 51 66.7
MSTRG.13441 Avicennia marina HOM05D002318 ORTHO05D004713 1.7e-11 72.0 47 66.0
Gohir.A13G080000 Gossypium hirsutum HOM05D002318 ORTHO05D004713 1.7e-11 72.0 55 63.6
Gohir.D05G306000 Gossypium hirsutum HOM05D002318 ORTHO05D004713 1.7e-11 72.0 53 64.2
Gorai.009G326000 Gossypium raimondii HOM05D002318 ORTHO05D004713 1.7e-11 72.0 53 64.2
CARHR062230 Cardamine hirsuta HOM05D002318 ORTHO05D004713 2.3e-11 71.6 51 64.7
CiPaw.05G127900 Carya illinoinensis HOM05D002318 ORTHO05D004713 2.3e-11 71.6 61 60.7
Gohir.A05G306000 Gossypium hirsutum HOM05D002318 ORTHO05D004713 2.3e-11 71.6 53 62.3
QL03p070842 Quercus lobata HOM05D002318 ORTHO05D004713 2.3e-11 71.6 51 66.7
A02p15840 Brassica napus HOM05D002318 ORTHO05D004713 3.0e-11 71.2 49 67.3
A07p35630 Brassica napus HOM05D002318 ORTHO05D004713 3.0e-11 71.2 48 66.7
C06p40580 Brassica napus HOM05D002318 ORTHO05D004713 3.0e-11 71.2 48 66.7
BolC6t39374H Brassica oleracea HOM05D002318 ORTHO05D004713 3.0e-11 71.2 48 66.7
BraA07t31151Z Brassica rapa HOM05D002318 ORTHO05D004713 3.0e-11 71.2 48 66.7
Duzib268G0995 Durio zibethinus HOM05D002318 ORTHO05D004713 3.0e-11 71.2 61 60.7
THA.LOC104808588 Tarenaya hassleriana HOM05D002318 ORTHO05D004713 3.9e-11 70.9 51 66.7
TWI79G0696 Tripterygium wilfordii HOM05D002318 ORTHO05D004713 3.9e-11 70.9 54 61.1
Actinidia33242 Actinidia chinensis HOM05D002318 ORTHO05D004713 5.1e-11 70.5 54 59.3
Ca_04909_v3 Cicer arietinum L. HOM05D002318 ORTHO05D004713 5.1e-11 70.5 53 66.0
Eucgr.B03179 Eucalyptus grandis HOM05D002318 ORTHO05D004713 5.1e-11 70.5 52 59.6
PGR102G0166 Punica granatum HOM05D002318 ORTHO05D004713 5.1e-11 70.5 54 63.0
VMungo1215G3203 Vigna mungo HOM05D002318 ORTHO05D004713 5.1e-11 70.5 55 61.8
AT1G69340 Arabidopsis thaliana HOM05D002318 ORTHO05D004713 6.6e-11 70.1 48 64.6
Carub.0002s1594 Capsella rubella HOM05D002318 ORTHO05D004713 6.6e-11 70.1 48 64.6
Duzib248G0382 Durio zibethinus HOM05D002318 ORTHO05D004713 6.6e-11 70.1 61 60.7
ECA246G1706 Erigeron canadensis HOM05D002318 ORTHO05D004713 6.6e-11 70.1 56 62.5
Manes.01G030200 Manihot esculenta HOM05D002318 ORTHO05D004713 6.6e-11 70.1 51 64.7
RcHm_v2.0_Chr4g0438861 Rosa chinensis HOM05D002318 ORTHO05D004713 6.6e-11 70.1 54 59.3
HPP92_022583 Vanilla planifolia HOM05D002318 ORTHO05D004713 6.6e-11 70.1 55 54.5
FAN17G0182 Fragaria x ananassa HOM05D002318 ORTHO05D004713 8.6e-11 69.7 54 59.3
FAN22G1596 Fragaria x ananassa HOM05D002318 ORTHO05D004713 8.6e-11 69.7 54 59.3
Glyma.07G226333 Glycine max HOM05D002318 ORTHO05D004713 8.6e-11 69.7 52 65.4
Glyma.20G027400 Glycine max HOM05D002318 ORTHO05D004713 8.6e-11 69.7 52 65.4
Lalb_Chr16g0385621 Lupinus albus HOM05D002318 ORTHO05D004713 8.6e-11 69.7 52 63.5
Medtr5g043560 Medicago truncatula HOM05D002318 ORTHO05D004713 8.6e-11 69.7 54 57.4
SalBow8G0328 Salvia bowleyana HOM05D002318 ORTHO05D004713 8.6e-11 69.7 51 60.8
Ca_25952_v3 Cicer arietinum L. HOM05D002318 ORTHO05D004713 1.1e-10 69.3 52 61.5
MBI17_g16776_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D004713 1.1e-10 69.3 54 57.4
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 1.1e-10 69.3 51 66.7
Aa31LG7G8480 Aethionema arabicum HOM05D002318 ORTHO05D004713 1.5e-10 68.9 51 60.8
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 1.5e-10 68.9 54 59.3
unitig_26.g10292 Utricularia gibba HOM05D002318 ORTHO05D004713 1.5e-10 68.9 52 63.5
Phvul.002G167900 Phaseolus vulgaris HOM05D002318 ORTHO05D004713 2.5e-10 68.2 41 70.7
CiPaw.06G090500 Carya illinoinensis HOM05D002318 ORTHO05D004713 3.3e-10 67.8 47 63.8
FvH4_4g30490 Fragaria vesca HOM05D002318 ORTHO05D004713 3.3e-10 67.8 54 57.4
FAN12G1805 Fragaria x ananassa HOM05D002318 ORTHO05D004713 3.3e-10 67.8 54 57.4
VMungo0251G1052 Vigna mungo HOM05D002318 ORTHO05D004713 3.3e-10 67.8 41 70.7
Os10g0444400 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D004713 4.3e-10 67.4 41 68.3
SGA_v2.0_scaffold63G21634 Striga asiatica HOM05D002318 ORTHO05D004713 9.5e-10 66.2 54 57.4
TPR.G21770 Trifolium pratense HOM05D002318 ORTHO05D004713 9.5e-10 66.2 51 58.8
Eucgr.G02463 Eucalyptus grandis HOM05D002318 ORTHO05D004713 1.2e-09 65.9 54 55.6
SMO118G0381 Selaginella moellendorffii HOM05D002318 ORTHO05D004713 1.2e-09 65.9 46 58.7
Zm00001eb047110 Zea mays HOM05D002318 ORTHO05D004713 2.1e-09 65.1 41 65.9
Zm00001eb004120 Zea mays HOM05D002318 ORTHO05D004713 3.6e-09 64.3 49 59.2
AagrBONN_evm.TU.Sc2ySwM_117.1854 Anthoceros agrestis HOM05D002318 ORTHO05D004713 4.7e-09 63.9 47 59.6
BcaC03g15074 Brassica carinata HOM05D002318 ORTHO05D004713 4.7e-09 63.9 49 63.3
BolC2t08701H Brassica oleracea HOM05D002318 ORTHO05D004713 4.7e-09 63.9 49 63.3
Os03g0151100 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D004713 6.2e-09 63.5 51 58.8
SEGI_36557 Sequoiadendron giganteum HOM05D002318 ORTHO05D004713 6.2e-09 63.5 47 59.6
Pp3c13_22190 Physcomitrium patens HOM05D002318 ORTHO05D004713 8.1e-09 63.2 47 55.3
Pp3c3_20410 Physcomitrium patens HOM05D002318 ORTHO05D004713 1.1e-08 62.8 54 51.9
CBR_g6630 Chara braunii HOM05D002318 ORTHO05D004713 1.4e-08 62.4 59 52.5
PSO409G0025 Papaver somniferum HOM05D002318 ORTHO05D004713 1.4e-08 62.4 55 54.5
HanXRQChr10g0307891 Helianthus annuus HOM05D002318 ORTHO05D016670 1.8e-08 62.0 35 74.3
HanXRQChr16g0507981 Helianthus annuus HOM05D002318 ORTHO05D016670 1.8e-08 62.0 35 74.3
C02p26300 Brassica napus HOM05D002318 ORTHO05D004713 2.3e-08 61.6 49 59.2
SHI26376 Sapria himalayana HOM05D002318 ORTHO05D000014 1.2e-07 59.3 48 56.2
Mapoly0008s0106 Marchantia polymorpha HOM05D002318 ORTHO05D004713 3.4e-07 57.8 53 50.9


User provided reference genes

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