Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.1e-153 546.6 286 100.0
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 2.2e-136 489.2 286 87.8
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 2.8e-136 488.8 286 88.5
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 1.8e-122 443.0 283 78.8
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 3.5e-118 428.7 285 76.5
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 5.9e-118 427.9 285 76.1
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 3.2e-111 405.6 282 72.3
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 7.0e-111 404.4 284 73.9
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.2e-110 403.7 283 74.6
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.6e-110 403.3 283 74.2
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 2.7e-110 402.5 282 74.5
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 3.5e-110 402.1 284 74.3
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 4.6e-110 401.7 283 74.6
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 7.8e-110 401.0 282 71.6
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.0e-109 400.6 283 70.3
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 1.0e-109 400.6 283 74.2
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 8.6e-109 397.5 283 71.4
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 1.1e-108 397.1 283 73.5
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 3.3e-108 395.6 283 70.3
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 5.6e-108 394.8 286 70.6
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 9.5e-108 394.0 282 70.9
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 1.6e-107 393.3 283 71.0
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 3.6e-107 392.1 280 72.1
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 4.7e-107 391.7 283 71.0
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 1.8e-106 389.8 276 71.0
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 5.2e-106 388.3 282 70.2
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 8.9e-106 387.5 285 70.5
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 1.2e-105 387.1 282 67.4
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 1.5e-105 386.7 282 68.4
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 3.4e-105 385.6 279 71.0
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 7.5e-105 384.4 276 70.7
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 7.5e-105 384.4 286 70.3
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 9.8e-105 384.0 282 67.4
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 9.8e-105 384.0 279 70.3
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 9.8e-105 384.0 283 68.9
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 2.2e-104 382.9 282 67.7
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 3.7e-104 382.1 284 68.0
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 3.7e-104 382.1 282 67.7
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 3.7e-104 382.1 282 69.1
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 3.7e-104 382.1 277 71.1
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 6.4e-104 381.3 282 69.1
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.1e-103 380.6 275 71.6
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.1e-103 380.6 277 69.7
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 1.9e-103 379.8 281 68.7
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 2.4e-103 379.4 283 69.6
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 3.2e-103 379.0 283 70.7
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 3.2e-103 379.0 277 71.1
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 3.2e-103 379.0 282 67.4
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 5.4e-103 378.3 293 67.6
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 5.4e-103 378.3 277 71.1
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 7.1e-103 377.9 275 71.3
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 2.7e-102 375.9 280 68.9
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 4.6e-102 375.2 274 70.8
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.0e-101 374.0 277 70.4
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 1.7e-101 373.2 283 69.6
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 1.7e-101 373.2 274 70.1
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 8.6e-101 370.9 281 66.5
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 8.6e-101 370.9 287 67.2
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 1.9e-100 369.8 259 71.8
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.5e-100 369.4 287 67.6
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.8e-99 365.9 291 66.0
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 1.1e-98 364.0 279 68.1
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 2.3e-98 362.8 283 64.7
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 3.1e-98 362.5 284 64.8
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.0e-98 362.1 283 66.4
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 1.2e-97 360.5 309 62.8
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 1.5e-97 360.1 284 65.1
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 3.4e-97 359.0 283 67.8
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 9.9e-97 357.5 244 73.8
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 6.4e-96 354.8 230 75.7
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 1.9e-95 353.2 285 65.6
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 4.1e-95 352.1 282 67.4
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 4.1e-95 352.1 229 76.0
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 5.4e-95 351.7 279 68.1
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 1.2e-94 350.5 285 66.3
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 2.1e-94 349.7 282 62.1
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 2.7e-94 349.4 285 65.6
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 2.7e-94 349.4 285 66.0
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 2.7e-94 349.4 285 66.0
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 2.7e-94 349.4 285 66.0
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 2.7e-94 349.4 229 75.5
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 3.5e-94 349.0 285 66.7
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 3.5e-94 349.0 285 66.7
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 3.5e-94 349.0 285 66.7
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.6e-94 348.6 291 63.6
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 7.8e-94 347.8 280 65.0
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.0e-93 347.4 275 68.0
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.0e-93 347.4 283 65.0
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.0e-93 347.4 284 65.5
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 2.3e-93 346.3 285 66.3
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 2.3e-93 346.3 285 65.6
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 2.3e-93 346.3 285 65.3
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 3.0e-93 345.9 282 66.7
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 3.9e-93 345.5 285 66.0
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 6.6e-93 344.7 285 66.0
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 8.6e-93 344.4 285 64.6
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.9e-92 343.2 285 65.3
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.9e-92 343.2 277 66.1
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 3.3e-92 342.4 265 65.3
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 7.3e-92 341.3 230 75.7
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 2.8e-91 339.3 282 63.5
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 1.4e-90 337.0 279 64.5
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.8e-90 336.7 245 69.0
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 3.1e-90 335.9 289 61.6
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.4e-89 332.0 282 62.8
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 2.2e-88 329.7 216 74.5
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 3.2e-87 325.9 282 61.0
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 7.1e-87 324.7 277 61.7
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 8.7e-85 317.8 254 64.2
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 2.5e-84 316.2 229 71.2
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.6e-83 313.5 283 59.7
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.6e-83 313.5 238 66.0
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 3.6e-83 312.4 231 68.8
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 4.8e-83 312.0 252 64.7
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 3.1e-82 309.3 231 68.4
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 1.3e-80 303.9 230 64.8
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 8.4e-80 301.2 212 73.6
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 2.7e-78 296.2 239 64.4
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 7.6e-73 278.1 293 48.5
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 3.2e-71 272.7 231 60.2
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 2.3e-69 266.5 289 49.8
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 9.0e-66 254.6 285 49.1
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.3e-59 234.2 213 62.4
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 6.3e-59 231.9 265 52.1
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.1e-58 229.2 197 53.8
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.9e-58 228.4 197 53.8
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.0e-58 228.0 197 53.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.0e-57 226.9 197 53.3
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.5e-57 225.7 156 70.5
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.1e-54 215.3 139 76.3
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.1e-50 204.5 214 56.5
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.9e-49 198.7 227 52.9
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 7.7e-49 198.4 251 48.6
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.2e-47 191.8 197 47.7
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 9.4e-47 191.4 138 70.3
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.5e-40 168.3 162 59.3
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-36 156.8 185 49.2
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.5e-32 141.7 189 40.2
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.4e-29 134.4 205 38.0
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.6e-28 130.2 119 61.3
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 4.4e-28 129.4 76 84.2
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 5.7e-28 129.0 83 79.5
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.5e-25 119.4 206 42.2
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 1.7e-24 117.5 222 36.0
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 1.7e-24 117.5 218 32.1
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.0e-24 115.9 194 43.3
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 3.2e-23 113.2 99 62.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 3.2e-23 113.2 99 62.6
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.0e-17 94.0 59 76.3
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.0e-16 91.7 58 74.1
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.9e-16 90.1 57 73.7
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 8.5e-16 88.6 58 72.4
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 4.7e-14 82.8 91 44.0
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.0e-13 81.6 64 65.6
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.5e-12 75.5 46 76.1
HanXRQChr13g0418021 Helianthus annuus HOM05D055070 ORTHO05D005871 1.8e-10 70.9 82 53.7
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 7.0e-10 68.9 51 68.6
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 3.8e-08 63.2 92 43.5
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 5.6e-07 59.3 60 55.0
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 5.6e-07 59.3 60 55.0
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 3.6e-06 56.6 61 50.8


User provided reference genes

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