Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0361861 Helianthus annuus HOM05D003448 ORTHO05D004028 6.0e-86 320.9 168 100.0
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 9.7e-52 207.2 164 70.7
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 6.1e-38 161.4 168 54.8
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 2.0e-36 156.4 165 53.9
HanXRQChr12g0361791 Helianthus annuus HOM05D003448 ORTHO05D004028 7.5e-36 154.5 168 56.5
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 6.3e-35 151.4 169 52.1
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 2.7e-30 136.0 162 53.7
HanXRQChr12g0362021 Helianthus annuus HOM05D003448 ORTHO05D004028 3.6e-30 135.6 76 96.1
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 6.1e-30 134.8 169 50.9
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 1.5e-28 130.2 172 47.7
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 9.8e-28 127.5 172 50.0
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 9.8e-28 127.5 158 48.1
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 1.3e-27 127.1 151 51.7
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 1.3e-27 127.1 151 51.7
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 4.8e-27 125.2 177 46.9
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 1.1e-26 124.0 150 48.7
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 1.1e-26 124.0 176 46.6
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 2.4e-26 122.9 151 47.0
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 4.1e-26 122.1 154 46.1
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 4.1e-26 122.1 171 48.0
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 5.4e-26 121.7 151 47.0
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 1.6e-25 120.2 171 44.4
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 2.7e-25 119.4 175 46.3
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 5.9e-25 118.2 152 46.1
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 1.3e-24 117.1 157 44.6
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 1.3e-24 117.1 171 45.0
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 3.8e-24 115.5 151 44.4
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 5.0e-24 115.2 175 41.7
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 6.5e-24 114.8 169 42.0
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 8.5e-24 114.4 156 47.4
ECA246G1613 Erigeron canadensis HOM05D003448 ORTHO05D004028 8.5e-24 114.4 123 52.8
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 1.5e-23 113.6 150 46.7
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 1.5e-23 113.6 158 43.0
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 1.9e-23 113.2 157 45.2
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 2.1e-22 109.8 157 42.7
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 2.1e-22 109.8 157 41.4
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 3.6e-22 109.0 157 43.9
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 4.7e-22 108.6 156 42.3
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 1.0e-21 107.5 177 41.8
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 1.4e-21 107.1 159 44.0
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 1.8e-21 106.7 158 43.0
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 2.3e-21 106.3 177 41.2
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 4.0e-21 105.5 169 40.2
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 4.0e-21 105.5 172 44.8
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 5.2e-21 105.1 174 41.4
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 6.8e-21 104.8 154 44.2
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 8.8e-21 104.4 146 42.5
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 8.8e-21 104.4 157 42.7
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 1.5e-20 103.6 155 43.9
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 2.6e-20 102.8 161 42.2
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 2.6e-20 102.8 167 38.9
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 5.7e-20 101.7 154 41.6
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 5.7e-20 101.7 155 40.0
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 9.8e-20 100.9 154 42.2
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 9.8e-20 100.9 153 44.4
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.7e-19 100.1 155 40.0
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.7e-19 100.1 155 40.0
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 1.7e-19 100.1 169 43.2
AT2G03330 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 2.2e-19 99.8 159 41.5
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 2.2e-19 99.8 144 43.8
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 2.2e-19 99.8 144 43.8
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 2.2e-19 99.8 154 41.6
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 2.2e-19 99.8 159 40.3
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 2.8e-19 99.4 143 45.5
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 3.7e-19 99.0 139 46.0
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 3.7e-19 99.0 154 42.9
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 4.9e-19 98.6 176 42.6
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 4.9e-19 98.6 152 40.1
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 8.3e-19 97.8 181 37.6
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 8.3e-19 97.8 140 43.6
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.8e-18 96.7 154 43.5
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 2.4e-18 96.3 150 41.3
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 2.4e-18 96.3 162 39.5
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 3.1e-18 95.9 138 44.9
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 5.4e-18 95.1 183 36.6
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 7.0e-18 94.7 140 44.3
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 9.2e-18 94.4 147 42.9
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 2.7e-17 92.8 170 37.6
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 5.9e-17 91.7 173 39.9
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 7.7e-17 91.3 174 36.8
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 2.3e-16 89.7 142 43.0
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 3.8e-16 89.0 175 38.3
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 8.6e-16 87.8 167 35.3
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 1.1e-15 87.4 144 43.1
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 2.5e-15 86.3 144 40.3
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 2.5e-15 86.3 144 40.3
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 3.3e-15 85.9 125 43.2
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 3.3e-15 85.9 157 40.8
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 7.3e-15 84.7 142 40.1
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 7.3e-15 84.7 146 38.4
C02p51340 Brassica napus HOM05D003448 ORTHO05D004028 9.5e-15 84.3 129 42.6
C02p51370 Brassica napus HOM05D003448 ORTHO05D004028 9.5e-15 84.3 129 42.6
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 4.7e-14 82.0 134 39.6
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 8.0e-14 81.3 145 40.7
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 8.0e-14 81.3 145 40.7
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.3e-13 79.7 152 40.8
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 3.0e-13 79.3 154 37.0
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 4.0e-13 79.0 179 34.1
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 8.9e-13 77.8 152 39.5
Nitab4.5_0014231g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 8.9e-13 77.8 168 33.3
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 1.2e-12 77.4 176 39.2
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 1.2e-12 77.4 157 40.1
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.2e-12 77.4 160 34.4
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.5e-12 77.0 151 38.4
FAN22G1572 Fragaria x ananassa HOM05D003448 ORTHO05D004028 4.4e-12 75.5 97 47.4
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 5.7e-12 75.1 160 36.2
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 7.5e-12 74.7 154 38.3
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 7.5e-12 74.7 183 33.9
FAN07G2405 Fragaria x ananassa HOM05D003448 ORTHO05D004028 1.3e-11 73.9 97 47.4
FAN12G3596 Fragaria x ananassa HOM05D003448 ORTHO05D004028 1.3e-11 73.9 97 46.4
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.3e-11 73.9 151 37.7
FAN17G1640 Fragaria x ananassa HOM05D003448 ORTHO05D004028 1.7e-11 73.6 97 46.4
SalBow2G2694 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.7e-11 73.6 184 33.7
PGSC0003DMG400046292 Solanum tuberosum HOM05D003448 ORTHO05D004028 1.7e-11 73.6 162 35.2
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 2.2e-11 73.2 126 39.7
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.2e-11 73.2 148 34.5
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 2.2e-11 73.2 116 42.2
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.9e-11 72.8 168 36.9
CSS0034838 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 4.9e-11 72.0 133 38.3
Nitab4.5_0000391g0100 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.9e-11 72.0 128 35.9
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 6.4e-11 71.6 173 37.0
SalBow1G1885 Salvia bowleyana HOM05D003448 ORTHO05D004028 8.3e-11 71.2 107 43.9
Nitab4.5_0004471g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.1e-10 70.9 139 36.7
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 1.1e-10 70.9 160 34.4
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 2.4e-10 69.7 162 36.4
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 2.4e-10 69.7 131 35.9
MD12G1099700 Malus domestica HOM05D003448 ORTHO05D004028 4.1e-10 68.9 115 41.7
Nitab4.5_0000391g0110 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.1e-10 68.9 139 34.5
ECA233G3599 Erigeron canadensis HOM05D003448 ORTHO05D004028 7.0e-10 68.2 54 59.3
Lalb_Chr05g0220181 Lupinus albus HOM05D003448 ORTHO05D004028 9.2e-10 67.8 157 36.9
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 9.2e-10 67.8 160 34.4
unitig_699.g19913 Utricularia gibba HOM05D003448 ORTHO05D004028 9.2e-10 67.8 133 35.3
Peaxi162Scf00222g00125 Petunia axillaris HOM05D003448 ORTHO05D004028 1.6e-09 67.0 151 36.4
Phvul.002G168700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 1.6e-09 67.0 172 34.9
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 1.6e-09 67.0 159 34.6
Glyma.20G030600 Glycine max HOM05D003448 ORTHO05D004028 2.7e-09 66.2 144 34.7
Sopen05g007650 Solanum pennellii HOM05D003448 ORTHO05D004028 2.7e-09 66.2 151 34.4
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 7.8e-09 64.7 165 33.9
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 7.8e-09 64.7 160 31.2
Hma1.2p1_0261F.1_g104800 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 1.0e-08 64.3 50 62.0
Nitab4.5_0005448g0040 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.0e-08 64.3 117 36.8
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 1.7e-08 63.5 75 50.7
PGSC0003DMG400028404 Solanum tuberosum HOM05D003448 ORTHO05D004028 2.3e-08 63.2 140 36.4
SalBow8G2290 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.9e-08 62.4 72 48.6
Os12g0257500 Oryza sativa ssp. japonica HOM05D003448 ORTHO05D004028 5.0e-08 62.0 127 38.6
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 5.0e-08 62.0 142 36.6
Sopen05g007690 Solanum pennellii HOM05D003448 ORTHO05D004028 8.6e-08 61.2 137 35.0
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 1.1e-07 60.8 171 32.2
Gohir.A03G102650 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.5e-07 60.5 92 39.1
Zm00001eb408540 Zea mays HOM05D003448 ORTHO05D004028 1.5e-07 60.5 145 36.6
Psat7g135520 Pisum sativum HOM05D003448 ORTHO05D004028 1.9e-07 60.1 146 36.3
TPR.G34075 Trifolium pratense HOM05D003448 ORTHO05D004028 4.3e-07 58.9 117 42.7
TPR.G38090 Trifolium pratense HOM05D003448 ORTHO05D004028 5.6e-07 58.5 133 37.6
Medtr4g082355 Medicago truncatula HOM05D003448 ORTHO05D004028 9.5e-07 57.8 120 38.3
TAR629G0321 Trochodendron aralioides HOM05D003448 ORTHO05D004028 1.6e-06 57.0 97 38.1
Solyc05g012810.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 3.6e-06 55.8 90 37.8
TPR.G36791 Trifolium pratense HOM05D003448 ORTHO05D004028 8.0e-06 54.7 145 33.1


User provided reference genes

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